Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
11:38:34 (1164): wrapper (7.7.26015): starting
11:38:34 (1164): wrapper: running run_atlas (--nthreads 8)
[2025-11-21 11:38:34] Arguments: --nthreads 8
[2025-11-21 11:38:34] Threads: 8
[2025-11-21 11:38:34] Checking for CVMFS
[2025-11-21 11:38:35] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-21 11:38:36] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-21 11:38:36] Running cvmfs_config stat atlas.cern.ch
[2025-11-21 11:38:37] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-21 11:38:37] 2.11.2.0 12124 203922 141776 153121 0 199 21297932 25165824 4251 130560 25 83380351 99.880 38383688 2800 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-21 11:38:37] CVMFS is ok
[2025-11-21 11:38:37] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-21 11:38:37] Checking for apptainer binary...
[2025-11-21 11:38:37] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-21 11:38:37] Running /usr/bin/apptainer --version
[2025-11-21 11:38:37] apptainer version 1.3.2-1.el7
[2025-11-21 11:38:37] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-21 11:39:25] cg-vwn300.simple-grid.lan
[2025-11-21 11:39:25] apptainer works
[2025-11-21 11:39:25] Set ATHENA_PROC_NUMBER=8
[2025-11-21 11:39:25] Set ATHENA_CORE_NUMBER=8
[2025-11-21 11:39:25] Starting ATLAS job with PandaID=6891571643
[2025-11-21 11:39:25] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/6 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-22 13:08:24]  *** The last 200 lines of the pilot log: ***
[2025-11-22 13:08:24] 2025-11-22 12:07:36,390 | INFO     | time since job start (91443s) is within the limit (172800.0s)
[2025-11-22 13:08:24] 2025-11-22 12:07:38,002 | INFO     | monitor loop #6163: job 0:6891571643 is in state 'finished'
[2025-11-22 13:08:24] 2025-11-22 12:07:38,003 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-22 13:08:24] 2025-11-22 12:07:38,408 | INFO     | time since job start (91445s) is within the limit (172800.0s)
[2025-11-22 13:08:24] 2025-11-22 12:07:40,415 | INFO     | time since job start (91447s) is within the limit (172800.0s)
[2025-11-22 13:08:24] 2025-11-22 12:07:40,510 | INFO     | monitor loop #6164: job 0:6891571643 is in state 'finished'
[2025-11-22 13:08:24] 2025-11-22 12:07:40,510 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-22 13:08:24] 2025-11-22 12:07:42,422 | INFO     | time since job start (91449s) is within the limit (172800.0s)
[2025-11-22 13:08:24] 2025-11-22 12:07:43,014 | INFO     | monitor loop #6165: job 0:6891571643 is in state 'finished'
[2025-11-22 13:08:24] 2025-11-22 12:07:43,015 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-22 13:08:24] 2025-11-22 12:07:44,430 | INFO     | time since job start (91451s) is within the limit (172800.0s)
[2025-11-22 13:08:24] 2025-11-22 12:07:45,526 | INFO     | monitor loop #6166: job 0:6891571643 is in state 'finished'
[2025-11-22 13:08:24] 2025-11-22 12:07:45,526 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-22 13:08:24] 2025-11-22 12:07:46,440 | INFO     | time since job start (91453s) is within the limit (172800.0s)
[2025-11-22 13:08:24] 2025-11-22 12:07:46,730 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-22 13:08:24] 2025-11-22 12:07:46,731 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.9959999999996
[2025-11-22 13:08:24] 2025-11-22 12:07:46,733 | INFO     | using path: /var/lib/boinc/slots/6/PanDA_Pilot-6891571643/memory_monitor_summary.json (trf name=prmon)
[2025-11-22 13:08:24] 2025-11-22 12:07:46,734 | INFO     | extracted standard info from prmon json
[2025-11-22 13:08:24] 2025-11-22 12:07:46,734 | INFO     | extracted standard memory fields from prmon json
[2025-11-22 13:08:24] 2025-11-22 12:07:46,734 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-22 13:08:24] 2025-11-22 12:07:46,762 | INFO     | fitting pss+swap vs Time
[2025-11-22 13:08:24] 2025-11-22 12:07:46,765 | INFO     | sum of square deviations: 1023677263422.2024
[2025-11-22 13:08:24] 2025-11-22 12:07:46,828 | INFO     | sum of deviations: 3858867654780.534
[2025-11-22 13:08:24] 2025-11-22 12:07:46,829 | INFO     | mean x: 1763767714.1316319
[2025-11-22 13:08:24] 2025-11-22 12:07:46,829 | INFO     | mean y: 2851410.8186702486
[2025-11-22 13:08:24] 2025-11-22 12:07:46,829 | INFO     | intersect: -6645871214.763028
[2025-11-22 13:08:24] 2025-11-22 12:07:46,831 | INFO     | chi2: 19.650606850054885
[2025-11-22 13:08:24] 2025-11-22 12:07:46,833 | INFO     | sum of square deviations: 1013399984635.7699
[2025-11-22 13:08:24] 2025-11-22 12:07:46,892 | INFO     | sum of deviations: 4334451761767.878
[2025-11-22 13:08:24] 2025-11-22 12:07:46,893 | INFO     | mean x: 1763767561.6354446
[2025-11-22 13:08:24] 2025-11-22 12:07:46,893 | INFO     | mean y: 2858467.911051213
[2025-11-22 13:08:24] 2025-11-22 12:07:46,893 | INFO     | intersect: -7541019103.418788
[2025-11-22 13:08:24] 2025-11-22 12:07:46,895 | INFO     | chi2: 16.73935592651954
[2025-11-22 13:08:24] 2025-11-22 12:07:46,895 | INFO     | current chi2=16.73935592651954 (change=14.815068795329411 %)
[2025-11-22 13:08:24] 2025-11-22 12:07:46,895 | INFO     | right removable region: 1483
[2025-11-22 13:08:24] 2025-11-22 12:07:46,898 | INFO     | sum of square deviations: 1013398956785.7697
[2025-11-22 13:08:24] 2025-11-22 12:07:46,960 | INFO     | sum of deviations: 3238589426776.906
[2025-11-22 13:08:24] 2025-11-22 12:07:46,960 | INFO     | mean x: 1763767866.6354446
[2025-11-22 13:08:24] 2025-11-22 12:07:46,960 | INFO     | mean y: 2860613.602425876
[2025-11-22 13:08:24] 2025-11-22 12:07:46,961 | INFO     | intersect: -5633734851.515998
[2025-11-22 13:08:24] 2025-11-22 12:07:46,962 | INFO     | chi2: 15.020114083983348
[2025-11-22 13:08:24] 2025-11-22 12:07:46,962 | INFO     | current chi2=15.020114083983348 (change=23.564120952623934 %)
[2025-11-22 13:08:24] 2025-11-22 12:07:46,963 | INFO     | left removable region: 10
[2025-11-22 13:08:24] 2025-11-22 12:07:46,965 | INFO     | sum of square deviations: 991030554573.4882
[2025-11-22 13:08:24] 2025-11-22 12:07:47,022 | INFO     | sum of deviations: 3297131522858.05
[2025-11-22 13:08:24] 2025-11-22 12:07:47,022 | INFO     | mean x: 1763767836.143924
[2025-11-22 13:08:24] 2025-11-22 12:07:47,022 | INFO     | mean y: 2877609.9714867617
[2025-11-22 13:08:24] 2025-11-22 12:07:47,023 | INFO     | intersect: -5865129692.846778
[2025-11-22 13:08:24] 2025-11-22 12:07:47,024 | INFO     | chi2: 7.787899775198127
[2025-11-22 13:08:24] 2025-11-22 12:07:47,025 | INFO     | current memory leak: 3.33 B/s (using 1473 data points, chi2=7.79)
[2025-11-22 13:08:24] 2025-11-22 12:07:47,027 | INFO     | could have reported an average CPU frequency of 1999 MHz (50 samples)
[2025-11-22 13:08:24] 2025-11-22 12:07:47,027 | INFO     | ..............................
[2025-11-22 13:08:24] 2025-11-22 12:07:47,028 | INFO     | . Timing measurements:
[2025-11-22 13:08:24] 2025-11-22 12:07:47,028 | INFO     | . get job = 0 s
[2025-11-22 13:08:24] 2025-11-22 12:07:47,028 | INFO     | . initial setup = 15 s
[2025-11-22 13:08:24] 2025-11-22 12:07:47,028 | INFO     | . payload setup = 162 s
[2025-11-22 13:08:24] 2025-11-22 12:07:47,028 | INFO     | . stage-in = 0 s
[2025-11-22 13:08:24] 2025-11-22 12:07:47,028 | INFO     | . payload execution = 90994 s
[2025-11-22 13:08:24] 2025-11-22 12:07:47,028 | INFO     | . stage-out = 5 s
[2025-11-22 13:08:24] 2025-11-22 12:07:47,028 | INFO     | . log creation = 2 s
[2025-11-22 13:08:24] 2025-11-22 12:07:47,028 | INFO     | ..............................
[2025-11-22 13:08:24] 2025-11-22 12:07:47,161 | INFO     | 
[2025-11-22 13:08:24] 2025-11-22 12:07:47,162 | INFO     | job summary report
[2025-11-22 13:08:24] 2025-11-22 12:07:47,162 | INFO     | --------------------------------------------------
[2025-11-22 13:08:24] 2025-11-22 12:07:47,162 | INFO     | PanDA job id: 6891571643
[2025-11-22 13:08:24] 2025-11-22 12:07:47,162 | INFO     | task id: 47493068
[2025-11-22 13:08:24] 2025-11-22 12:07:47,162 | INFO     | errors: (none)
[2025-11-22 13:08:24] 2025-11-22 12:07:47,162 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-22 13:08:24] 2025-11-22 12:07:47,162 | INFO     | pilot state: finished 
[2025-11-22 13:08:24] 2025-11-22 12:07:47,163 | INFO     | transexitcode: 0
[2025-11-22 13:08:24] 2025-11-22 12:07:47,163 | INFO     | exeerrorcode: 0
[2025-11-22 13:08:24] 2025-11-22 12:07:47,163 | INFO     | exeerrordiag: 
[2025-11-22 13:08:24] 2025-11-22 12:07:47,163 | INFO     | exitcode: 0
[2025-11-22 13:08:24] 2025-11-22 12:07:47,163 | INFO     | exitmsg: OK
[2025-11-22 13:08:24] 2025-11-22 12:07:47,163 | INFO     | cpuconsumptiontime: 333447 s
[2025-11-22 13:08:24] 2025-11-22 12:07:47,163 | INFO     | nevents: 1000
[2025-11-22 13:08:24] 2025-11-22 12:07:47,163 | INFO     | neventsw: 0
[2025-11-22 13:08:24] 2025-11-22 12:07:47,163 | INFO     | pid: 11569
[2025-11-22 13:08:24] 2025-11-22 12:07:47,163 | INFO     | pgrp: 11569
[2025-11-22 13:08:24] 2025-11-22 12:07:47,163 | INFO     | corecount: 8
[2025-11-22 13:08:24] 2025-11-22 12:07:47,163 | INFO     | event service: False
[2025-11-22 13:08:24] 2025-11-22 12:07:47,164 | INFO     | sizes: {0: 2298625, 1: 2298824, 12: 2298824, 22: 2298852, 33: 2298880, 44: 2298936, 55: 2299092, 66: 2299120, 76: 2299148, 87: 2299204, 97: 2299494, 98: 2299802, 9
[2025-11-22 13:08:24] 2025-11-22 12:07:47,164 | INFO     | --------------------------------------------------
[2025-11-22 13:08:24] 2025-11-22 12:07:47,164 | INFO     | 
[2025-11-22 13:08:24] 2025-11-22 12:07:47,164 | INFO     | executing command: ls -lF /var/lib/boinc/slots/6
[2025-11-22 13:08:24] 2025-11-22 12:07:47,191 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-22 13:08:24] 2025-11-22 12:07:47,191 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-22 13:08:24] 2025-11-22 12:07:47,191 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-22 13:08:24] 2025-11-22 12:07:47,192 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-22 13:08:24] 2025-11-22 12:07:47,192 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-22 13:08:24] 2025-11-22 12:07:47,192 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-22 13:08:24] 2025-11-22 12:07:47,192 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-22 13:08:24] 2025-11-22 12:07:47,192 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-22 13:08:24] 2025-11-22 12:07:47,192 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-22 13:08:24] 2025-11-22 12:07:47,192 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-22 13:08:24] 2025-11-22 12:07:47,192 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-22 13:08:24] 2025-11-22 12:07:47,192 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-22 13:08:24] 2025-11-22 12:07:47,192 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-22 13:08:24] 2025-11-22 12:07:47,192 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-22 13:08:24] 2025-11-22 12:07:47,193 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-22 13:08:24] 2025-11-22 12:07:47,193 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-22 13:08:24] 2025-11-22 12:07:47,193 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-22 13:08:24] 2025-11-22 12:07:47,193 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-22 13:08:24] 2025-11-22 12:07:47,193 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-22 13:08:24] 2025-11-22 12:07:47,193 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-22 13:08:24] 2025-11-22 12:07:47,193 | INFO     | job 6891571643 has completed (purged errors)
[2025-11-22 13:08:24] 2025-11-22 12:07:47,193 | INFO     | overall cleanup function is called
[2025-11-22 13:08:24] 2025-11-22 12:07:48,211 | INFO     | --- collectZombieJob: --- 10, [11569]
[2025-11-22 13:08:24] 2025-11-22 12:07:48,212 | INFO     | zombie collector waiting for pid 11569
[2025-11-22 13:08:24] 2025-11-22 12:07:48,212 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-22 13:08:24] 2025-11-22 12:07:48,212 | INFO     | collected zombie processes
[2025-11-22 13:08:24] 2025-11-22 12:07:48,212 | INFO     | will attempt to kill all subprocesses of pid=11569
[2025-11-22 13:08:24] 2025-11-22 12:07:48,334 | INFO     | process IDs to be killed: [11569] (in reverse order)
[2025-11-22 13:08:24] 2025-11-22 12:07:49,218 | WARNING  | found no corresponding commands to process id(s)
[2025-11-22 13:08:24] 2025-11-22 12:07:49,219 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-22 13:08:24] 2025-11-22 12:07:49,223 | INFO     | did not find any defunct processes belonging to 11569
[2025-11-22 13:08:24] 2025-11-22 12:07:49,227 | INFO     | did not find any defunct processes belonging to 11569
[2025-11-22 13:08:24] 2025-11-22 12:07:49,266 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-22 13:08:24] 2025-11-22 12:07:49,266 | INFO     | ready for new job
[2025-11-22 13:08:24] 2025-11-22 12:07:49,266 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-22 13:08:24] 2025-11-22 12:07:49,273 | INFO     | ***************************************
[2025-11-22 13:08:24] 2025-11-22 12:07:49,274 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-22 13:08:24] 2025-11-22 12:07:49,274 | INFO     | ***************************************
[2025-11-22 13:08:24] 2025-11-22 12:07:49,274 | INFO     | 
[2025-11-22 13:08:24] 2025-11-22 12:07:49,277 | INFO     | pilot is running in a VM
[2025-11-22 13:08:24] 2025-11-22 12:07:49,277 | INFO     | architecture information:
[2025-11-22 13:08:24] 2025-11-22 12:07:49,296 | INFO     | executing command: cat /etc/os-release
[2025-11-22 13:08:24] 2025-11-22 12:07:49,417 | INFO     | cat /etc/os-release:
[2025-11-22 13:08:24] NAME="CentOS Linux"
[2025-11-22 13:08:24] VERSION="7 (Core)"
[2025-11-22 13:08:24] ID="centos"
[2025-11-22 13:08:24] ID_LIKE="rhel fedora"
[2025-11-22 13:08:24] VERSION_ID="7"
[2025-11-22 13:08:24] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-22 13:08:24] ANSI_COLOR="0;31"
[2025-11-22 13:08:24] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-22 13:08:24] HOME_URL="https://www.centos.org/"
[2025-11-22 13:08:24] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-22 13:08:24] 
[2025-11-22 13:08:24] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-22 13:08:24] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-22 13:08:24] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-22 13:08:24] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-22 13:08:24] 
[2025-11-22 13:08:24] 2025-11-22 12:07:49,417 | INFO     | ***************************************
[2025-11-22 13:08:24] 2025-11-22 12:07:49,921 | INFO     | executing command: df -mP /var/lib/boinc/slots/6
[2025-11-22 13:08:24] 2025-11-22 12:07:50,040 | INFO     | sufficient remaining disk space (493465108480 B)
[2025-11-22 13:08:24] 2025-11-22 12:07:50,041 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-22 13:08:24] 2025-11-22 12:07:50,041 | INFO     | current server update state: UPDATING_FINAL
[2025-11-22 13:08:24] 2025-11-22 12:07:50,041 | INFO     | update_server=False
[2025-11-22 13:08:24] 2025-11-22 12:07:50,041 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-22 13:08:24] 2025-11-22 12:07:50,541 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-22 13:08:24] 2025-11-22 12:07:50,542 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-22 13:08:24] 2025-11-22 12:07:50,542 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-22 13:08:24] 2025-11-22 12:07:50,542 | INFO     | will abort loop
[2025-11-22 13:08:24] 2025-11-22 12:07:50,799 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-22 13:08:24] 2025-11-22 12:07:50,857 | INFO     | all payload control threads have been joined
[2025-11-22 13:08:24] 2025-11-22 12:07:50,970 | INFO     | all job control threads have been joined
[2025-11-22 13:08:24] 2025-11-22 12:07:51,047 | INFO     | [job] retrieve thread has finished
[2025-11-22 13:08:24] 2025-11-22 12:07:51,056 | INFO     | all data control threads have been joined
[2025-11-22 13:08:24] 2025-11-22 12:07:51,405 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-22 13:08:24] 2025-11-22 12:07:51,443 | INFO     | [data] copytool_in thread has finished
[2025-11-22 13:08:24] 2025-11-22 12:07:51,549 | INFO     | [job] job monitor thread has finished
[2025-11-22 13:08:24] 2025-11-22 12:07:51,618 | INFO     | [job] create_data_payload thread has finished
[2025-11-22 13:08:24] 2025-11-22 12:07:51,654 | INFO     | [job] validate thread has finished
[2025-11-22 13:08:24] 2025-11-22 12:07:51,864 | INFO     | [payload] control thread has finished
[2025-11-22 13:08:24] 2025-11-22 12:07:51,977 | INFO     | [job] control thread has finished
[2025-11-22 13:08:24] 2025-11-22 12:07:51,992 | INFO     | [payload] validate_post thread has finished
[2025-11-22 13:08:24] 2025-11-22 12:07:52,063 | INFO     | [data] control thread has finished
[2025-11-22 13:08:24] 2025-11-22 12:07:52,102 | INFO     | [payload] validate_pre thread has finished
[2025-11-22 13:08:24] 2025-11-22 12:07:52,178 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-22 13:08:24] 2025-11-22 12:07:52,340 | INFO     | [payload] failed_post thread has finished
[2025-11-22 13:08:24] 2025-11-22 12:07:52,362 | INFO     | [payload] execute_payloads thread has finished
[2025-11-22 13:08:24] 2025-11-22 12:07:52,807 | INFO     | [data] copytool_out thread has finished
[2025-11-22 13:08:24] 2025-11-22 12:07:52,892 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-22 13:08:24] 2025-11-22 12:07:53,184 | INFO     | [job] queue monitor thread has finished
[2025-11-22 13:08:24] 2025-11-22 12:07:56,902 | INFO     | [data] queue_monitor thread has finished
[2025-11-22 13:08:24] 2025-11-22 12:08:12,775 | INFO     | [monitor] cgroup control has ended
[2025-11-22 13:08:24] 2025-11-22 12:08:13,289 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139804998141760)>', '<ExcThread(monitor, started 139804247312128)>']
[2025-11-22 13:08:24] 2025-11-22 12:08:18,313 | INFO     | all workflow threads have been joined
[2025-11-22 13:08:24] 2025-11-22 12:08:18,314 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-22 13:08:24] 2025-11-22 12:08:18,314 | INFO     | traces error code: 0
[2025-11-22 13:08:24] 2025-11-22 12:08:18,314 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-22 13:08:24] 2025-11-22 12:08:19,669 | INFO     | PID=4965 has CPU usage=1.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-11-22 13:08:24] 2025-11-22 12:08:19,669 | INFO     | .. there are 9 such processes running
[2025-11-22 13:08:24] 2025-11-22 12:08:19,670 | INFO     | found 0 job(s) in 20 queues
[2025-11-22 13:08:24] 2025-11-22 12:08:19,670 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-22 13:08:24] 2025-11-22 12:08:19,670 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-22 13:08:24] 2025-11-22 12:08:19,670 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-22 13:08:24] 2025-11-22 12:08:19,670 | INFO     | [monitor] control thread has ended
[2025-11-22 13:08:24] 2025-11-22 12:08:20,084 [wrapper] ==== pilot stdout END ====
[2025-11-22 13:08:24] 2025-11-22 12:08:20,158 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-22 13:08:24] 2025-11-22 12:08:20,245 [wrapper] pilotpid: 4965
[2025-11-22 13:08:24] 2025-11-22 12:08:20,297 [wrapper] Pilot exit status: 0
[2025-11-22 13:08:24] 2025-11-22 12:08:20,574 [wrapper] pandaids: 6891571643
[2025-11-22 13:08:24] 2025-11-22 12:08:21,596 [wrapper] cleanup supervisor_pilot 27087 4966
[2025-11-22 13:08:24] 2025-11-22 12:08:21,680 [wrapper] Test setup, not cleaning
[2025-11-22 13:08:24] 2025-11-22 12:08:21,778 [wrapper] apfmon messages muted
[2025-11-22 13:08:24] 2025-11-22 12:08:21,880 [wrapper] ==== wrapper stdout END ====
[2025-11-22 13:08:24] 2025-11-22 12:08:21,994 [wrapper] ==== wrapper stderr END ====
[2025-11-22 13:08:24]  *** Error codes and diagnostics ***
[2025-11-22 13:08:24]     "exeErrorCode": 0,
[2025-11-22 13:08:24]     "exeErrorDiag": "",
[2025-11-22 13:08:24]     "pilotErrorCode": 0,
[2025-11-22 13:08:24]     "pilotErrorDiag": "",
[2025-11-22 13:08:24]  *** Listing of results directory ***
[2025-11-22 13:08:24] total 1324320
[2025-11-22 13:08:24] -rw-r--r--. 1 boinc boinc    576529 Nov 18 16:47 pilot3.tar.gz
[2025-11-22 13:08:24] -rw-r--r--. 1 boinc boinc      5112 Nov 18 16:54 queuedata.json
[2025-11-22 13:08:24] -rwx------. 1 boinc boinc     36292 Nov 18 16:56 runpilot2-wrapper.sh
[2025-11-22 13:08:24] -rw-r--r--. 1 boinc boinc       100 Nov 21 11:38 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-22 13:08:24] -rwxr-xr-x. 1 boinc boinc      7986 Nov 21 11:38 run_atlas
[2025-11-22 13:08:24] -rw-r--r--. 1 boinc boinc       105 Nov 21 11:38 job.xml
[2025-11-22 13:08:24] -rw-r--r--. 2 boinc boinc 411129242 Nov 21 11:38 EVNT.47493065._000293.pool.root.1
[2025-11-22 13:08:24] -rw-r--r--. 1 boinc boinc      6390 Nov 21 11:38 init_data.xml
[2025-11-22 13:08:24] -rw-r--r--. 2 boinc boinc     15120 Nov 21 11:38 start_atlas.sh
[2025-11-22 13:08:24] drwxrwx--x. 2 boinc boinc        68 Nov 21 11:38 shared
[2025-11-22 13:08:24] -rw-r--r--. 2 boinc boinc    590099 Nov 21 11:38 input.tar.gz
[2025-11-22 13:08:24] -rw-r--r--. 1 boinc boinc         0 Nov 21 11:38 boinc_lockfile
[2025-11-22 13:08:24] -rw-r--r--. 1 boinc boinc      2773 Nov 21 11:39 pandaJob.out
[2025-11-22 13:08:24] -rw-------. 1 boinc boinc    989817 Nov 21 11:43 agis_schedconf.cvmfs.json
[2025-11-22 13:08:24] drwx------. 5 boinc boinc      4096 Nov 21 11:43 pilot3
[2025-11-22 13:08:24] -rw-r--r--. 1 boinc boinc       533 Nov 22 12:43 boinc_task_state.xml
[2025-11-22 13:08:24] -rw-------. 1 boinc boinc 911598327 Nov 22 13:04 HITS.47493068._002926.pool.root.1
[2025-11-22 13:08:24] -rw-------. 1 boinc boinc      1031 Nov 22 13:05 memory_monitor_summary.json
[2025-11-22 13:08:24] -rw-------. 1 boinc boinc   1526164 Nov 22 13:06 agis_ddmendpoints.agis.ALL.json
[2025-11-22 13:08:24] -rw-------. 1 boinc boinc   2557906 Nov 22 13:06 log.47493068._002926.job.log.tgz.1
[2025-11-22 13:08:24] -rw-------. 1 boinc boinc        95 Nov 22 13:07 pilot_heartbeat.json
[2025-11-22 13:08:24] -rw-------. 1 boinc boinc      7947 Nov 22 13:07 heartbeat.json
[2025-11-22 13:08:24] -rw-r--r--. 1 boinc boinc      8192 Nov 22 13:08 boinc_mmap_file
[2025-11-22 13:08:24] -rw-r--r--. 1 boinc boinc        29 Nov 22 13:08 wrapper_checkpoint.txt
[2025-11-22 13:08:24] -rw-------. 1 boinc boinc       819 Nov 22 13:08 pilotlog.txt
[2025-11-22 13:08:24] -rw-------. 1 boinc boinc  12175793 Nov 22 13:08 log.47493068._002926.job.log.1
[2025-11-22 13:08:24] -rw-------. 1 boinc boinc       353 Nov 22 13:08 output.list
[2025-11-22 13:08:24] -rw-r--r--. 1 boinc boinc       620 Nov 22 13:08 runtime_log
[2025-11-22 13:08:24] -rw-------. 1 boinc boinc  14755840 Nov 22 13:08 result.tar.gz
[2025-11-22 13:08:24] -rw-------. 1 boinc boinc       662 Nov 22 13:08 7ONMDmXFdf8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmIQFKDmWYG99n.diag
[2025-11-22 13:08:24] -rw-r--r--. 1 boinc boinc      8703 Nov 22 13:08 runtime_log.err
[2025-11-22 13:08:24] -rw-r--r--. 1 boinc boinc     21420 Nov 22 13:08 stderr.txt
[2025-11-22 13:08:24] HITS file was successfully produced:
[2025-11-22 13:08:24] -rw-------. 1 boinc boinc 911598327 Nov 22 13:04 shared/HITS.pool.root.1
[2025-11-22 13:08:24]  *** Contents of shared directory: ***
[2025-11-22 13:08:24] total 1306740
[2025-11-22 13:08:24] -rw-r--r--. 2 boinc boinc 411129242 Nov 21 11:38 ATLAS.root_0
[2025-11-22 13:08:24] -rw-r--r--. 2 boinc boinc     15120 Nov 21 11:38 start_atlas.sh
[2025-11-22 13:08:24] -rw-r--r--. 2 boinc boinc    590099 Nov 21 11:38 input.tar.gz
[2025-11-22 13:08:24] -rw-------. 1 boinc boinc 911598327 Nov 22 13:04 HITS.pool.root.1
[2025-11-22 13:08:24] -rw-------. 1 boinc boinc  14755840 Nov 22 13:08 result.tar.gz
13:08:26 (1164): run_atlas exited; CPU time 334133.438044
13:08:26 (1164): called boinc_finish(0)

</stderr_txt>
]]>

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