Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
22:13:22 (5795): wrapper (7.7.26015): starting
22:13:22 (5795): wrapper: running run_atlas (--nthreads 8)
[2025-11-19 22:13:22] Arguments: --nthreads 8
[2025-11-19 22:13:22] Threads: 8
[2025-11-19 22:13:22] Checking for CVMFS
[2025-11-19 22:13:23] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-19 22:13:23] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-19 22:13:23] Running cvmfs_config stat atlas.cern.ch
[2025-11-19 22:13:25] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-19 22:13:25] 2.11.2.0 32329 275765 145064 153056 2 230 13854281 25165824 4364 130560 3 136098013 99.885 79884001 3164 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-19 22:13:25] CVMFS is ok
[2025-11-19 22:13:25] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-19 22:13:25] Checking for apptainer binary...
[2025-11-19 22:13:25] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-19 22:13:25] Running /usr/bin/apptainer --version
[2025-11-19 22:13:25] apptainer version 1.3.2-1.el7
[2025-11-19 22:13:25] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-19 22:13:29] cg-vwn362.simple-grid.lan
[2025-11-19 22:13:29] apptainer works
[2025-11-19 22:13:29] Set ATHENA_PROC_NUMBER=8
[2025-11-19 22:13:29] Set ATHENA_CORE_NUMBER=8
[2025-11-19 22:13:29] Starting ATLAS job with PandaID=6891571285
[2025-11-19 22:13:29] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-20 22:58:21]  *** The last 200 lines of the pilot log: ***
[2025-11-20 22:58:21] 2025-11-20 21:57:26,397 | INFO     | fitting pss+swap vs Time
[2025-11-20 22:58:21] 2025-11-20 21:57:26,400 | INFO     | sum of square deviations: 941422201239.5901
[2025-11-20 22:58:21] 2025-11-20 21:57:26,462 | INFO     | sum of deviations: 3470109930076.071
[2025-11-20 22:58:21] 2025-11-20 21:57:26,463 | INFO     | mean x: 1763631657.8701658
[2025-11-20 22:58:21] 2025-11-20 21:57:26,463 | INFO     | mean y: 2864947.5642265193
[2025-11-20 22:58:21] 2025-11-20 21:57:26,463 | INFO     | intersect: -6497933228.762465
[2025-11-20 22:58:21] 2025-11-20 21:57:26,465 | INFO     | chi2: 9.794293185467776
[2025-11-20 22:58:21] 2025-11-20 21:57:26,467 | INFO     | sum of square deviations: 931704149710.1711
[2025-11-20 22:58:21] 2025-11-20 21:57:26,528 | INFO     | sum of deviations: 3972205696486.777
[2025-11-20 22:58:21] 2025-11-20 21:57:26,528 | INFO     | mean x: 1763631505.3749135
[2025-11-20 22:58:21] 2025-11-20 21:57:26,528 | INFO     | mean y: 2872826.176022176
[2025-11-20 22:58:21] 2025-11-20 21:57:26,529 | INFO     | intersect: -7516152515.004449
[2025-11-20 22:58:21] 2025-11-20 21:57:26,531 | INFO     | chi2: 6.446915384770292
[2025-11-20 22:58:21] 2025-11-20 21:57:26,531 | INFO     | current chi2=6.446915384770292 (change=34.1768184524447 %)
[2025-11-20 22:58:21] 2025-11-20 21:57:26,533 | INFO     | sum of square deviations: 922053215718.188
[2025-11-20 22:58:21] 2025-11-20 21:57:26,594 | INFO     | sum of deviations: 4304845122296.8164
[2025-11-20 22:58:21] 2025-11-20 21:57:26,595 | INFO     | mean x: 1763631352.879694
[2025-11-20 22:58:21] 2025-11-20 21:57:26,595 | INFO     | mean y: 2878077.5827538245
[2025-11-20 22:58:21] 2025-11-20 21:57:26,595 | INFO     | intersect: -8231093343.535654
[2025-11-20 22:58:21] 2025-11-20 21:57:26,597 | INFO     | chi2: 4.628365498801593
[2025-11-20 22:58:21] 2025-11-20 21:57:26,597 | INFO     | current chi2=4.628365498801593 (change=28.20806195571767 %)
[2025-11-20 22:58:21] 2025-11-20 21:57:26,599 | INFO     | sum of square deviations: 912468728605.9634
[2025-11-20 22:58:21] 2025-11-20 21:57:26,653 | INFO     | sum of deviations: 4344360612192.6147
[2025-11-20 22:58:21] 2025-11-20 21:57:26,653 | INFO     | mean x: 1763631200.3810189
[2025-11-20 22:58:21] 2025-11-20 21:57:26,654 | INFO     | mean y: 2878704.5666434052
[2025-11-20 22:58:21] 2025-11-20 21:57:26,654 | INFO     | intersect: -8393956914.200013
[2025-11-20 22:58:21] 2025-11-20 21:57:26,656 | INFO     | chi2: 4.5170311055195125
[2025-11-20 22:58:21] 2025-11-20 21:57:26,656 | INFO     | current chi2=4.5170311055195125 (change=2.405479716563188 %)
[2025-11-20 22:58:21] 2025-11-20 21:57:26,656 | INFO     | right removable region: 1432
[2025-11-20 22:58:21] 2025-11-20 21:57:26,658 | INFO     | sum of square deviations: 931702939470.1732
[2025-11-20 22:58:21] 2025-11-20 21:57:26,713 | INFO     | sum of deviations: 2922679077759.6133
[2025-11-20 22:58:21] 2025-11-20 21:57:26,714 | INFO     | mean x: 1763631810.3749135
[2025-11-20 22:58:21] 2025-11-20 21:57:26,714 | INFO     | mean y: 2873534.851004851
[2025-11-20 22:58:21] 2025-11-20 21:57:26,714 | INFO     | intersect: -5529501189.634967
[2025-11-20 22:58:21] 2025-11-20 21:57:26,716 | INFO     | chi2: 6.031830847423035
[2025-11-20 22:58:21] 2025-11-20 21:57:26,716 | INFO     | current chi2=6.031830847423035 (change=38.414842876332024 %)
[2025-11-20 22:58:21] 2025-11-20 21:57:26,718 | INFO     | sum of square deviations: 922051235115.9689
[2025-11-20 22:58:21] 2025-11-20 21:57:26,775 | INFO     | sum of deviations: 2742375192785.0664
[2025-11-20 22:58:21] 2025-11-20 21:57:26,776 | INFO     | time since job start (88846s) is within the limit (172800.0s)
[2025-11-20 22:58:21] 2025-11-20 21:57:26,777 | INFO     | mean x: 1763631962.876217
[2025-11-20 22:58:21] 2025-11-20 21:57:26,778 | INFO     | mean y: 2876380.9610570236
[2025-11-20 22:58:21] 2025-11-20 21:57:26,778 | INFO     | intersect: -5242537713.176852
[2025-11-20 22:58:21] 2025-11-20 21:57:26,780 | INFO     | chi2: 5.603587374975473
[2025-11-20 22:58:21] 2025-11-20 21:57:26,780 | INFO     | current chi2=5.603587374975473 (change=7.099726157448854 %)
[2025-11-20 22:58:21] 2025-11-20 21:57:26,780 | INFO     | left removable region: 20
[2025-11-20 22:58:21] 2025-11-20 21:57:26,782 | INFO     | sum of square deviations: 872937503213.8695
[2025-11-20 22:58:21] 2025-11-20 21:57:26,839 | INFO     | sum of deviations: 3458257577997.689
[2025-11-20 22:58:21] 2025-11-20 21:57:26,839 | INFO     | mean x: 1763631779.8866856
[2025-11-20 22:58:21] 2025-11-20 21:57:26,839 | INFO     | mean y: 2892774.079320113
[2025-11-20 22:58:21] 2025-11-20 21:57:26,840 | INFO     | intersect: -6983968192.640317
[2025-11-20 22:58:21] 2025-11-20 21:57:26,841 | INFO     | chi2: 0.23386103481012996
[2025-11-20 22:58:21] 2025-11-20 21:57:26,842 | INFO     | current memory leak: 3.96 B/s (using 1412 data points, chi2=0.23)
[2025-11-20 22:58:21] 2025-11-20 21:57:26,844 | INFO     | could have reported an average CPU frequency of 1999 MHz (49 samples)
[2025-11-20 22:58:21] 2025-11-20 21:57:26,844 | INFO     | ..............................
[2025-11-20 22:58:21] 2025-11-20 21:57:26,845 | INFO     | . Timing measurements:
[2025-11-20 22:58:21] 2025-11-20 21:57:26,845 | INFO     | . get job = 0 s
[2025-11-20 22:58:21] 2025-11-20 21:57:26,845 | INFO     | . initial setup = 8 s
[2025-11-20 22:58:21] 2025-11-20 21:57:26,845 | INFO     | . payload setup = 164 s
[2025-11-20 22:58:21] 2025-11-20 21:57:26,845 | INFO     | . stage-in = 0 s
[2025-11-20 22:58:21] 2025-11-20 21:57:26,845 | INFO     | . payload execution = 88462 s
[2025-11-20 22:58:21] 2025-11-20 21:57:26,845 | INFO     | . stage-out = 4 s
[2025-11-20 22:58:21] 2025-11-20 21:57:26,845 | INFO     | . log creation = 1 s
[2025-11-20 22:58:21] 2025-11-20 21:57:26,845 | INFO     | ..............................
[2025-11-20 22:58:21] 2025-11-20 21:57:27,265 | INFO     | 
[2025-11-20 22:58:21] 2025-11-20 21:57:27,265 | INFO     | job summary report
[2025-11-20 22:58:21] 2025-11-20 21:57:27,265 | INFO     | --------------------------------------------------
[2025-11-20 22:58:21] 2025-11-20 21:57:27,265 | INFO     | PanDA job id: 6891571285
[2025-11-20 22:58:21] 2025-11-20 21:57:27,266 | INFO     | task id: 47493068
[2025-11-20 22:58:21] 2025-11-20 21:57:27,266 | INFO     | errors: (none)
[2025-11-20 22:58:21] 2025-11-20 21:57:27,266 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-20 22:58:21] 2025-11-20 21:57:27,266 | INFO     | pilot state: finished 
[2025-11-20 22:58:21] 2025-11-20 21:57:27,266 | INFO     | transexitcode: 0
[2025-11-20 22:58:21] 2025-11-20 21:57:27,266 | INFO     | exeerrorcode: 0
[2025-11-20 22:58:21] 2025-11-20 21:57:27,266 | INFO     | exeerrordiag: 
[2025-11-20 22:58:21] 2025-11-20 21:57:27,266 | INFO     | exitcode: 0
[2025-11-20 22:58:21] 2025-11-20 21:57:27,266 | INFO     | exitmsg: OK
[2025-11-20 22:58:21] 2025-11-20 21:57:27,267 | INFO     | cpuconsumptiontime: 333331 s
[2025-11-20 22:58:21] 2025-11-20 21:57:27,267 | INFO     | nevents: 1000
[2025-11-20 22:58:21] 2025-11-20 21:57:27,267 | INFO     | neventsw: 0
[2025-11-20 22:58:21] 2025-11-20 21:57:27,267 | INFO     | pid: 16110
[2025-11-20 22:58:21] 2025-11-20 21:57:27,267 | INFO     | pgrp: 16110
[2025-11-20 22:58:21] 2025-11-20 21:57:27,267 | INFO     | corecount: 8
[2025-11-20 22:58:21] 2025-11-20 21:57:27,267 | INFO     | event service: False
[2025-11-20 22:58:21] 2025-11-20 21:57:27,267 | INFO     | sizes: {0: 2296372, 1: 2297057, 2: 2297256, 13: 2297256, 24: 2297312, 34: 2297340, 45: 2297496, 56: 2297524, 67: 2297552, 77: 2297580, 88: 2297636, 95: 2298206, 99
[2025-11-20 22:58:21] 2025-11-20 21:57:27,267 | INFO     | --------------------------------------------------
[2025-11-20 22:58:21] 2025-11-20 21:57:27,267 | INFO     | 
[2025-11-20 22:58:21] 2025-11-20 21:57:27,268 | INFO     | executing command: ls -lF /var/lib/boinc/slots/3
[2025-11-20 22:58:21] 2025-11-20 21:57:27,330 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-20 22:58:21] 2025-11-20 21:57:27,331 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-20 22:58:21] 2025-11-20 21:57:27,331 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-20 22:58:21] 2025-11-20 21:57:27,331 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-20 22:58:21] 2025-11-20 21:57:27,331 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-20 22:58:21] 2025-11-20 21:57:27,331 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-20 22:58:21] 2025-11-20 21:57:27,331 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-20 22:58:21] 2025-11-20 21:57:27,331 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-20 22:58:21] 2025-11-20 21:57:27,332 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-20 22:58:21] 2025-11-20 21:57:27,332 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-20 22:58:21] 2025-11-20 21:57:27,332 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-20 22:58:21] 2025-11-20 21:57:27,332 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-20 22:58:21] 2025-11-20 21:57:27,332 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-20 22:58:21] 2025-11-20 21:57:27,332 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-20 22:58:21] 2025-11-20 21:57:27,332 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-20 22:58:21] 2025-11-20 21:57:27,332 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-20 22:58:21] 2025-11-20 21:57:27,332 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-20 22:58:21] 2025-11-20 21:57:27,332 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-20 22:58:21] 2025-11-20 21:57:27,333 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-20 22:58:21] 2025-11-20 21:57:27,333 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-20 22:58:21] 2025-11-20 21:57:27,333 | INFO     | job 6891571285 has completed (purged errors)
[2025-11-20 22:58:21] 2025-11-20 21:57:27,333 | INFO     | overall cleanup function is called
[2025-11-20 22:58:21] 2025-11-20 21:57:28,348 | INFO     | --- collectZombieJob: --- 10, [16110]
[2025-11-20 22:58:21] 2025-11-20 21:57:28,348 | INFO     | zombie collector waiting for pid 16110
[2025-11-20 22:58:21] 2025-11-20 21:57:28,348 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-20 22:58:21] 2025-11-20 21:57:28,348 | INFO     | collected zombie processes
[2025-11-20 22:58:21] 2025-11-20 21:57:28,348 | INFO     | will attempt to kill all subprocesses of pid=16110
[2025-11-20 22:58:21] 2025-11-20 21:57:28,455 | INFO     | process IDs to be killed: [16110] (in reverse order)
[2025-11-20 22:58:21] 2025-11-20 21:57:28,522 | WARNING  | found no corresponding commands to process id(s)
[2025-11-20 22:58:21] 2025-11-20 21:57:28,522 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-20 22:58:21] 2025-11-20 21:57:28,526 | INFO     | did not find any defunct processes belonging to 16110
[2025-11-20 22:58:21] 2025-11-20 21:57:28,529 | INFO     | did not find any defunct processes belonging to 16110
[2025-11-20 22:58:21] 2025-11-20 21:57:28,532 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-20 22:58:21] 2025-11-20 21:57:28,532 | INFO     | ready for new job
[2025-11-20 22:58:21] 2025-11-20 21:57:28,532 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-20 22:58:21] 2025-11-20 21:57:28,539 | INFO     | ***************************************
[2025-11-20 22:58:21] 2025-11-20 21:57:28,539 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-20 22:58:21] 2025-11-20 21:57:28,539 | INFO     | ***************************************
[2025-11-20 22:58:21] 2025-11-20 21:57:28,539 | INFO     | 
[2025-11-20 22:58:21] 2025-11-20 21:57:28,540 | INFO     | pilot is running in a VM
[2025-11-20 22:58:21] 2025-11-20 21:57:28,540 | INFO     | architecture information:
[2025-11-20 22:58:21] 2025-11-20 21:57:28,541 | INFO     | executing command: cat /etc/os-release
[2025-11-20 22:58:21] 2025-11-20 21:57:28,561 | INFO     | cat /etc/os-release:
[2025-11-20 22:58:21] NAME="CentOS Linux"
[2025-11-20 22:58:21] VERSION="7 (Core)"
[2025-11-20 22:58:21] ID="centos"
[2025-11-20 22:58:21] ID_LIKE="rhel fedora"
[2025-11-20 22:58:21] VERSION_ID="7"
[2025-11-20 22:58:21] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-20 22:58:21] ANSI_COLOR="0;31"
[2025-11-20 22:58:21] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-20 22:58:21] HOME_URL="https://www.centos.org/"
[2025-11-20 22:58:21] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-20 22:58:21] 
[2025-11-20 22:58:21] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-20 22:58:21] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-20 22:58:21] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-20 22:58:21] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-20 22:58:21] 
[2025-11-20 22:58:21] 2025-11-20 21:57:28,562 | INFO     | ***************************************
[2025-11-20 22:58:21] 2025-11-20 21:57:29,065 | INFO     | executing command: df -mP /var/lib/boinc/slots/3
[2025-11-20 22:58:21] 2025-11-20 21:57:29,105 | INFO     | sufficient remaining disk space (492906217472 B)
[2025-11-20 22:58:21] 2025-11-20 21:57:29,106 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-20 22:58:21] 2025-11-20 21:57:29,106 | INFO     | current server update state: UPDATING_FINAL
[2025-11-20 22:58:21] 2025-11-20 21:57:29,106 | INFO     | update_server=False
[2025-11-20 22:58:21] 2025-11-20 21:57:29,106 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-20 22:58:21] 2025-11-20 21:57:29,107 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-20 22:58:21] 2025-11-20 21:57:29,198 | INFO     | all job control threads have been joined
[2025-11-20 22:58:21] 2025-11-20 21:57:29,481 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-20 22:58:21] 2025-11-20 21:57:29,481 | INFO     | aborting loop
[2025-11-20 22:58:21] 2025-11-20 21:57:29,903 | INFO     | all data control threads have been joined
[2025-11-20 22:58:21] 2025-11-20 21:57:30,108 | INFO     | [job] retrieve thread has finished
[2025-11-20 22:58:21] 2025-11-20 21:57:30,202 | INFO     | [job] control thread has finished
[2025-11-20 22:58:21] 2025-11-20 21:57:30,280 | INFO     | [data] copytool_in thread has finished
[2025-11-20 22:58:21] 2025-11-20 21:57:30,319 | INFO     | all payload control threads have been joined
[2025-11-20 22:58:21] 2025-11-20 21:57:30,448 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-20 22:58:21] 2025-11-20 21:57:30,487 | INFO     | [job] job monitor thread has finished
[2025-11-20 22:58:21] 2025-11-20 21:57:30,619 | INFO     | [payload] failed_post thread has finished
[2025-11-20 22:58:21] 2025-11-20 21:57:30,696 | INFO     | [job] create_data_payload thread has finished
[2025-11-20 22:58:21] 2025-11-20 21:57:30,788 | INFO     | [payload] validate_pre thread has finished
[2025-11-20 22:58:21] 2025-11-20 21:57:30,909 | INFO     | [data] control thread has finished
[2025-11-20 22:58:21] 2025-11-20 21:57:30,990 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-20 22:58:21] 2025-11-20 21:57:31,114 | INFO     | [data] copytool_out thread has finished
[2025-11-20 22:58:21] 2025-11-20 21:57:31,267 | INFO     | [payload] validate_post thread has finished
[2025-11-20 22:58:21] 2025-11-20 21:57:31,274 | INFO     | [job] validate thread has finished
[2025-11-20 22:58:21] 2025-11-20 21:57:31,324 | INFO     | [payload] control thread has finished
[2025-11-20 22:58:21] 2025-11-20 21:57:31,470 | INFO     | [payload] execute_payloads thread has finished
[2025-11-20 22:58:21] 2025-11-20 21:57:31,986 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-20 22:58:21] 2025-11-20 21:57:32,991 | INFO     | [job] queue monitor thread has finished
[2025-11-20 22:58:21] 2025-11-20 21:57:34,999 | INFO     | [data] queue_monitor thread has finished
[2025-11-20 22:58:21] 2025-11-20 21:57:59,989 | INFO     | PID=9547 has CPU usage=2.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-11-20 22:58:21] 2025-11-20 21:57:59,989 | INFO     | .. there are 8 such processes running
[2025-11-20 22:58:21] 2025-11-20 21:57:59,989 | INFO     | found 0 job(s) in 20 queues
[2025-11-20 22:58:21] 2025-11-20 21:57:59,989 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-20 22:58:21] 2025-11-20 21:57:59,989 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-20 22:58:21] 2025-11-20 21:58:14,305 | INFO     | [monitor] cgroup control has ended
[2025-11-20 22:58:21] 2025-11-20 21:58:15,373 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140011091113792)>', '<ExcThread(monitor, started 140010347026176)>']
[2025-11-20 22:58:21] 2025-11-20 21:58:16,053 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-20 22:58:21] 2025-11-20 21:58:16,053 | INFO     | [monitor] control thread has ended
[2025-11-20 22:58:21] 2025-11-20 21:58:20,400 | INFO     | all workflow threads have been joined
[2025-11-20 22:58:21] 2025-11-20 21:58:20,400 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-20 22:58:21] 2025-11-20 21:58:20,401 | INFO     | traces error code: 0
[2025-11-20 22:58:21] 2025-11-20 21:58:20,401 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-20 22:58:21] 2025-11-20 21:58:20,659 [wrapper] ==== pilot stdout END ====
[2025-11-20 22:58:21] 2025-11-20 21:58:20,665 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-20 22:58:21] 2025-11-20 21:58:20,668 [wrapper] pilotpid: 9547
[2025-11-20 22:58:21] 2025-11-20 21:58:20,683 [wrapper] Pilot exit status: 0
[2025-11-20 22:58:21] 2025-11-20 21:58:20,778 [wrapper] pandaids: 6891571285
[2025-11-20 22:58:21] 2025-11-20 21:58:20,834 [wrapper] cleanup supervisor_pilot  9089 9548
[2025-11-20 22:58:21] 2025-11-20 21:58:20,850 [wrapper] Test setup, not cleaning
[2025-11-20 22:58:21] 2025-11-20 21:58:20,854 [wrapper] apfmon messages muted
[2025-11-20 22:58:21] 2025-11-20 21:58:20,859 [wrapper] ==== wrapper stdout END ====
[2025-11-20 22:58:21] 2025-11-20 21:58:20,863 [wrapper] ==== wrapper stderr END ====
[2025-11-20 22:58:21]  *** Error codes and diagnostics ***
[2025-11-20 22:58:21]     "exeErrorCode": 0,
[2025-11-20 22:58:21]     "exeErrorDiag": "",
[2025-11-20 22:58:21]     "pilotErrorCode": 0,
[2025-11-20 22:58:21]     "pilotErrorDiag": "",
[2025-11-20 22:58:21]  *** Listing of results directory ***
[2025-11-20 22:58:21] total 1304156
[2025-11-20 22:58:21] -rw-r--r--. 1 boinc boinc      5112 Nov 18 16:45 queuedata.json
[2025-11-20 22:58:21] -rwx------. 1 boinc boinc     36292 Nov 18 16:47 runpilot2-wrapper.sh
[2025-11-20 22:58:21] -rw-r--r--. 1 boinc boinc    576529 Nov 18 16:47 pilot3.tar.gz
[2025-11-20 22:58:21] -rw-r--r--. 1 boinc boinc       100 Nov 19 22:13 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-20 22:58:21] -rwxr-xr-x. 1 boinc boinc      7986 Nov 19 22:13 run_atlas
[2025-11-20 22:58:21] -rw-r--r--. 1 boinc boinc       105 Nov 19 22:13 job.xml
[2025-11-20 22:58:21] -rw-r--r--. 1 boinc boinc      6390 Nov 19 22:13 init_data.xml
[2025-11-20 22:58:21] -rw-r--r--. 2 boinc boinc 405838409 Nov 19 22:13 EVNT.47493065._000277.pool.root.1
[2025-11-20 22:58:21] -rw-r--r--. 2 boinc boinc     15120 Nov 19 22:13 start_atlas.sh
[2025-11-20 22:58:21] drwxrwx--x. 2 boinc boinc        68 Nov 19 22:13 shared
[2025-11-20 22:58:21] -rw-r--r--. 2 boinc boinc    590087 Nov 19 22:13 input.tar.gz
[2025-11-20 22:58:21] -rw-r--r--. 1 boinc boinc         0 Nov 19 22:13 boinc_lockfile
[2025-11-20 22:58:21] -rw-r--r--. 1 boinc boinc      2773 Nov 19 22:13 pandaJob.out
[2025-11-20 22:58:21] -rw-------. 1 boinc boinc    989443 Nov 19 22:16 agis_schedconf.cvmfs.json
[2025-11-20 22:58:21] drwx------. 5 boinc boinc      4096 Nov 19 22:16 pilot3
[2025-11-20 22:58:21] -rw-r--r--. 1 boinc boinc       533 Nov 20 22:42 boinc_task_state.xml
[2025-11-20 22:58:21] -rw-------. 1 boinc boinc 897051495 Nov 20 22:56 HITS.47493068._002765.pool.root.1
[2025-11-20 22:58:21] -rw-------. 1 boinc boinc      1033 Nov 20 22:57 memory_monitor_summary.json
[2025-11-20 22:58:21] -rw-------. 1 boinc boinc   1526164 Nov 20 22:57 agis_ddmendpoints.agis.ALL.json
[2025-11-20 22:58:21] -rw-------. 1 boinc boinc   2529721 Nov 20 22:57 log.47493068._002765.job.log.tgz.1
[2025-11-20 22:58:21] -rw-------. 1 boinc boinc        95 Nov 20 22:57 pilot_heartbeat.json
[2025-11-20 22:58:21] -rw-------. 1 boinc boinc      8628 Nov 20 22:57 heartbeat.json
[2025-11-20 22:58:21] -rw-r--r--. 1 boinc boinc        29 Nov 20 22:58 wrapper_checkpoint.txt
[2025-11-20 22:58:21] -rw-r--r--. 1 boinc boinc      8192 Nov 20 22:58 boinc_mmap_file
[2025-11-20 22:58:21] -rw-------. 1 boinc boinc      4883 Nov 20 22:58 pilotlog.txt
[2025-11-20 22:58:21] -rw-------. 1 boinc boinc  11799366 Nov 20 22:58 log.47493068._002765.job.log.1
[2025-11-20 22:58:21] -rw-------. 1 boinc boinc       353 Nov 20 22:58 output.list
[2025-11-20 22:58:21] -rw-r--r--. 1 boinc boinc       620 Nov 20 22:58 runtime_log
[2025-11-20 22:58:21] -rw-------. 1 boinc boinc  14346240 Nov 20 22:58 result.tar.gz
[2025-11-20 22:58:21] -rw-r--r--. 1 boinc boinc      8703 Nov 20 22:58 runtime_log.err
[2025-11-20 22:58:21] -rw-------. 1 boinc boinc       662 Nov 20 22:58 RJqLDmV6cf8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmsfFKDmR5GtKn.diag
[2025-11-20 22:58:21] -rw-r--r--. 1 boinc boinc     20839 Nov 20 22:58 stderr.txt
[2025-11-20 22:58:21] HITS file was successfully produced:
[2025-11-20 22:58:21] -rw-------. 1 boinc boinc 897051495 Nov 20 22:56 shared/HITS.pool.root.1
[2025-11-20 22:58:21]  *** Contents of shared directory: ***
[2025-11-20 22:58:21] total 1286964
[2025-11-20 22:58:21] -rw-r--r--. 2 boinc boinc 405838409 Nov 19 22:13 ATLAS.root_0
[2025-11-20 22:58:21] -rw-r--r--. 2 boinc boinc     15120 Nov 19 22:13 start_atlas.sh
[2025-11-20 22:58:21] -rw-r--r--. 2 boinc boinc    590087 Nov 19 22:13 input.tar.gz
[2025-11-20 22:58:21] -rw-------. 1 boinc boinc 897051495 Nov 20 22:56 HITS.pool.root.1
[2025-11-20 22:58:21] -rw-------. 1 boinc boinc  14346240 Nov 20 22:58 result.tar.gz
22:58:22 (5795): run_atlas exited; CPU time 333828.421760
22:58:22 (5795): called boinc_finish(0)

</stderr_txt>
]]>

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