Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
20:33:26 (259532): wrapper (7.7.26015): starting
20:33:26 (259532): wrapper: running run_atlas (--nthreads 3)
[2025-11-18 20:33:26] Arguments: --nthreads 3
[2025-11-18 20:33:26] Threads: 3
[2025-11-18 20:33:26] Checking for CVMFS
[2025-11-18 20:33:26] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-18 20:33:26] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-18 20:33:26] Running cvmfs_config stat atlas.cern.ch
[2025-11-18 20:33:27] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-18 20:33:27] 2.9.2.0 4099368 74 58508 153012 1 88 34148716 36864000 0 130560 0 1064822 99.871 134821 7487 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-18 20:33:27] CVMFS is ok
[2025-11-18 20:33:27] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-18 20:33:27] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-18 20:33:27] Further information can be found at the LHC@home message board.
[2025-11-18 20:33:27] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-18 20:33:27] Checking for apptainer binary...
[2025-11-18 20:33:27] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-18 20:33:27] Running /usr/bin/apptainer --version
[2025-11-18 20:33:27] apptainer version 1.4.1-1.1
[2025-11-18 20:33:27] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-18 20:33:27] thA335
[2025-11-18 20:33:27] apptainer works
[2025-11-18 20:33:27] Set ATHENA_PROC_NUMBER=3
[2025-11-18 20:33:27] Set ATHENA_CORE_NUMBER=3
[2025-11-18 20:33:27] Starting ATLAS job with PandaID=6891572800
[2025-11-18 20:33:27] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-18 20:37:45]  *** The last 200 lines of the pilot log: ***
[2025-11-18 20:37:45] ID="centos"
[2025-11-18 20:37:45] ID_LIKE="rhel fedora"
[2025-11-18 20:37:45] VERSION_ID="7"
[2025-11-18 20:37:45] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-18 20:37:45] ANSI_COLOR="0;31"
[2025-11-18 20:37:45] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-18 20:37:45] HOME_URL="https://www.centos.org/"
[2025-11-18 20:37:45] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-18 20:37:45] 
[2025-11-18 20:37:45] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-18 20:37:45] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-18 20:37:45] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-18 20:37:45] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-18 20:37:45] 
[2025-11-18 20:37:45] 2025-11-18 19:36:53,982 | INFO     | ***************************************
[2025-11-18 20:37:45] 2025-11-18 19:36:54,486 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-11-18 20:37:45] 2025-11-18 19:36:54,500 | INFO     | sufficient remaining disk space (827907375104 B)
[2025-11-18 20:37:45] 2025-11-18 19:36:54,500 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-18 20:37:45] 2025-11-18 19:36:54,500 | INFO     | current server update state: UPDATING_FINAL
[2025-11-18 20:37:45] 2025-11-18 19:36:54,500 | INFO     | update_server=False
[2025-11-18 20:37:45] 2025-11-18 19:36:54,500 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-18 20:37:45] 2025-11-18 19:36:54,500 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-18 20:37:45] 2025-11-18 19:36:54,500 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-18 20:37:45] 2025-11-18 19:36:54,813 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-18 20:37:45] 2025-11-18 19:36:54,813 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-18 20:37:45] 2025-11-18 19:36:54,813 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-18 20:37:45] 2025-11-18 19:36:54,814 | INFO     | will abort loop
[2025-11-18 20:37:45] 2025-11-18 19:36:54,895 | INFO     | all data control threads have been joined
[2025-11-18 20:37:45] 2025-11-18 19:36:55,206 | INFO     | all payload control threads have been joined
[2025-11-18 20:37:45] 2025-11-18 19:36:55,506 | INFO     | [job] queue monitor thread has finished
[2025-11-18 20:37:45] 2025-11-18 19:36:55,506 | INFO     | [job] retrieve thread has finished
[2025-11-18 20:37:45] 2025-11-18 19:36:55,702 | INFO     | [payload] failed_post thread has finished
[2025-11-18 20:37:45] 2025-11-18 19:36:55,728 | INFO     | [data] copytool_in thread has finished
[2025-11-18 20:37:45] 2025-11-18 19:36:55,800 | INFO     | all job control threads have been joined
[2025-11-18 20:37:45] 2025-11-18 19:36:55,815 | INFO     | [job] job monitor thread has finished
[2025-11-18 20:37:45] 2025-11-18 19:36:55,847 | INFO     | [payload] validate_post thread has finished
[2025-11-18 20:37:45] 2025-11-18 19:36:55,901 | INFO     | [data] control thread has finished
[2025-11-18 20:37:45] 2025-11-18 19:36:56,212 | INFO     | [job] validate thread has finished
[2025-11-18 20:37:45] 2025-11-18 19:36:56,212 | INFO     | [payload] control thread has finished
[2025-11-18 20:37:45] 2025-11-18 19:36:56,283 | INFO     | [job] create_data_payload thread has finished
[2025-11-18 20:37:45] 2025-11-18 19:36:56,346 | INFO     | [payload] validate_pre thread has finished
[2025-11-18 20:37:45] 2025-11-18 19:36:56,506 | INFO     | [data] copytool_out thread has finished
[2025-11-18 20:37:45] 2025-11-18 19:36:56,535 | INFO     | [payload] execute_payloads thread has finished
[2025-11-18 20:37:45] 2025-11-18 19:36:56,550 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-18 20:37:45] 2025-11-18 19:36:56,806 | INFO     | [job] control thread has finished
[2025-11-18 20:37:45] 2025-11-18 19:36:56,902 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-18 20:37:45] 2025-11-18 19:37:00,909 | INFO     | [data] queue_monitor thread has finished
[2025-11-18 20:37:45] 2025-11-18 19:37:24,297 | INFO     | PID=263258 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-18 20:37:45] 2025-11-18 19:37:24,297 | INFO     | found 0 job(s) in 20 queues
[2025-11-18 20:37:45] 2025-11-18 19:37:24,297 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-18 20:37:45] 2025-11-18 19:37:24,297 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-18 20:37:45] 2025-11-18 19:37:39,362 | INFO     | [monitor] cgroup control has ended
[2025-11-18 20:37:45] 2025-11-18 19:37:40,777 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140626666469184)>', '<ExcThread(monitor, started 140625953421056)>']
[2025-11-18 20:37:45] 2025-11-18 19:37:41,387 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-18 20:37:45] 2025-11-18 19:37:41,388 | INFO     | [monitor] control thread has ended
[2025-11-18 20:37:45] 2025-11-18 19:37:45,803 | INFO     | all workflow threads have been joined
[2025-11-18 20:37:45] 2025-11-18 19:37:45,805 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-18 20:37:45] 2025-11-18 19:37:45,805 | INFO     | traces error code: 0
[2025-11-18 20:37:45] 2025-11-18 19:37:45,806 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-18 20:37:45] 2025-11-18 19:37:45,853 [wrapper] ==== pilot stdout END ====
[2025-11-18 20:37:45] 2025-11-18 19:37:45,856 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-18 20:37:45] 2025-11-18 19:37:45,859 [wrapper] pilotpid: 263258
[2025-11-18 20:37:45] 2025-11-18 19:37:45,861 [wrapper] Pilot exit status: 0
[2025-11-18 20:37:45] 2025-11-18 19:37:45,868 [wrapper] pandaids: 6891572800
[2025-11-18 20:37:45] 2025-11-18 19:37:45,884 [wrapper] cleanup supervisor_pilot  263264 263259
[2025-11-18 20:37:45] 2025-11-18 19:37:45,886 [wrapper] Test setup, not cleaning
[2025-11-18 20:37:45] 2025-11-18 19:37:45,889 [wrapper] apfmon messages muted
[2025-11-18 20:37:45] 2025-11-18 19:37:45,891 [wrapper] ==== wrapper stdout END ====
[2025-11-18 20:37:45] 2025-11-18 19:37:45,894 [wrapper] ==== wrapper stderr END ====
[2025-11-18 20:37:45]  *** Error codes and diagnostics ***
[2025-11-18 20:37:45]     "exeErrorCode": 65,
[2025-11-18 20:37:45]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-18 20:37:45]     "pilotErrorCode": 1305,
[2025-11-18 20:37:45]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-18 20:37:45]  *** Listing of results directory ***
[2025-11-18 20:37:45] total 405108
[2025-11-18 20:37:45] -rw-r--r-- 1 boinc boinc    576529 Nov 18 17:24 pilot3.tar.gz
[2025-11-18 20:37:45] -rwx------ 1 boinc boinc     36292 Nov 18 17:30 runpilot2-wrapper.sh
[2025-11-18 20:37:45] -rw-r--r-- 1 boinc boinc      5112 Nov 18 17:30 queuedata.json
[2025-11-18 20:37:45] -rw-r--r-- 1 boinc boinc       100 Nov 18 20:33 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-18 20:37:45] -rwxr-xr-x 1 boinc boinc      7986 Nov 18 20:33 run_atlas
[2025-11-18 20:37:45] -rw-r--r-- 1 boinc boinc       105 Nov 18 20:33 job.xml
[2025-11-18 20:37:45] -rw-r--r-- 2 boinc boinc 410629858 Nov 18 20:33 EVNT.47493065._000355.pool.root.1
[2025-11-18 20:37:45] -rw-r--r-- 2 boinc boinc    590097 Nov 18 20:33 input.tar.gz
[2025-11-18 20:37:45] -rw-r--r-- 2 boinc boinc     15120 Nov 18 20:33 start_atlas.sh
[2025-11-18 20:37:45] drwxrwx--x 2 boinc boinc      4096 Nov 18 20:33 shared
[2025-11-18 20:37:45] -rw-r--r-- 1 boinc boinc         0 Nov 18 20:33 boinc_setup_complete
[2025-11-18 20:37:45] -rw-r--r-- 1 boinc boinc      6193 Nov 18 20:33 init_data.xml
[2025-11-18 20:37:45] -rw-r--r-- 1 boinc boinc         0 Nov 18 20:33 boinc_lockfile
[2025-11-18 20:37:45] -rw-r--r-- 1 boinc boinc      2773 Nov 18 20:33 pandaJob.out
[2025-11-18 20:37:45] -rw------- 1 boinc boinc    992790 Nov 18 20:33 agis_schedconf.cvmfs.json
[2025-11-18 20:37:45] -rw------- 1 boinc boinc   1525063 Nov 18 20:33 agis_ddmendpoints.agis.ALL.json
[2025-11-18 20:37:45] drwx------ 5 boinc boinc      4096 Nov 18 20:33 pilot3
[2025-11-18 20:37:45] -rw-r--r-- 1 boinc boinc       523 Nov 18 20:34 boinc_task_state.xml
[2025-11-18 20:37:45] -rw------- 1 boinc boinc       966 Nov 18 20:34 memory_monitor_summary.json
[2025-11-18 20:37:45] -rw------- 1 boinc boinc     56225 Nov 18 20:34 log.47493068._003545.job.log.tgz.1
[2025-11-18 20:37:45] -rw------- 1 boinc boinc        95 Nov 18 20:36 pilot_heartbeat.json
[2025-11-18 20:37:45] -rw------- 1 boinc boinc      8377 Nov 18 20:36 heartbeat.json
[2025-11-18 20:37:45] -rw-r--r-- 1 boinc boinc        23 Nov 18 20:37 wrapper_checkpoint.txt
[2025-11-18 20:37:45] -rw-r--r-- 1 boinc boinc      8192 Nov 18 20:37 boinc_mmap_file
[2025-11-18 20:37:45] -rw------- 1 boinc boinc      4937 Nov 18 20:37 pilotlog.txt
[2025-11-18 20:37:45] -rw------- 1 boinc boinc     92170 Nov 18 20:37 log.47493068._003545.job.log.1
[2025-11-18 20:37:45] -rw------- 1 boinc boinc       186 Nov 18 20:37 output.list
[2025-11-18 20:37:45] -rw-r--r-- 1 boinc boinc       620 Nov 18 20:37 runtime_log
[2025-11-18 20:37:45] -rw------- 1 boinc boinc    163840 Nov 18 20:37 result.tar.gz
[2025-11-18 20:37:45] -rw-r--r-- 1 boinc boinc      8624 Nov 18 20:37 runtime_log.err
[2025-11-18 20:37:45] -rw------- 1 boinc boinc       649 Nov 18 20:37 GOeLDmimdf8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm6oFKDmbB3tUm.diag
[2025-11-18 20:37:45] -rw-r--r-- 1 boinc boinc      9224 Nov 18 20:37 stderr.txt
[2025-11-18 20:37:45] No HITS result produced
[2025-11-18 20:37:45]  *** Contents of shared directory: ***
[2025-11-18 20:37:45] total 401768
[2025-11-18 20:37:45] -rw-r--r-- 2 boinc boinc 410629858 Nov 18 20:33 ATLAS.root_0
[2025-11-18 20:37:45] -rw-r--r-- 2 boinc boinc    590097 Nov 18 20:33 input.tar.gz
[2025-11-18 20:37:45] -rw-r--r-- 2 boinc boinc     15120 Nov 18 20:33 start_atlas.sh
[2025-11-18 20:37:45] -rw------- 1 boinc boinc    163840 Nov 18 20:37 result.tar.gz
20:37:47 (259532): run_atlas exited; CPU time 30.929038
20:37:47 (259532): called boinc_finish(0)

</stderr_txt>
]]>

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