Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
21:04:41 (26194): wrapper (7.7.26015): starting
21:04:41 (26194): wrapper: running run_atlas (--nthreads 8)
[2025-11-21 21:04:41] Arguments: --nthreads 8
[2025-11-21 21:04:41] Threads: 8
[2025-11-21 21:04:41] Checking for CVMFS
[2025-11-21 21:04:41] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-21 21:04:42] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-21 21:04:42] Running cvmfs_config stat atlas.cern.ch
[2025-11-21 21:04:43] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-21 21:04:43] 2.11.2.0 17186 278630 142240 153141 2 284 16768568 25165825 4462 130560 6 138757060 99.886 74910081 3019 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-21 21:04:43] CVMFS is ok
[2025-11-21 21:04:43] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-21 21:04:43] Checking for apptainer binary...
[2025-11-21 21:04:43] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-21 21:04:43] Running /usr/bin/apptainer --version
[2025-11-21 21:04:43] apptainer version 1.3.2-1.el7
[2025-11-21 21:04:43] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-21 21:05:13] cg-vwn311.simple-grid.lan
[2025-11-21 21:05:13] apptainer works
[2025-11-21 21:05:13] Set ATHENA_PROC_NUMBER=8
[2025-11-21 21:05:13] Set ATHENA_CORE_NUMBER=8
[2025-11-21 21:05:13] Starting ATLAS job with PandaID=6891571017
[2025-11-21 21:05:13] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/12 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-22 22:58:50]  *** The last 200 lines of the pilot log: ***
[2025-11-22 22:58:50] 2025-11-22 21:57:52,672 | INFO     | time since job start (92933s) is within the limit (172800.0s)
[2025-11-22 22:58:50] 2025-11-22 21:57:54,006 | INFO     | monitor loop #6224: job 0:6891571017 is in state 'finished'
[2025-11-22 22:58:50] 2025-11-22 21:57:54,007 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-22 22:58:50] 2025-11-22 21:57:54,683 | INFO     | time since job start (92935s) is within the limit (172800.0s)
[2025-11-22 22:58:50] 2025-11-22 21:57:56,517 | INFO     | monitor loop #6225: job 0:6891571017 is in state 'finished'
[2025-11-22 22:58:50] 2025-11-22 21:57:56,517 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-22 22:58:50] 2025-11-22 21:57:56,690 | INFO     | time since job start (92937s) is within the limit (172800.0s)
[2025-11-22 22:58:50] 2025-11-22 21:57:58,697 | INFO     | time since job start (92939s) is within the limit (172800.0s)
[2025-11-22 22:58:50] 2025-11-22 21:57:59,022 | INFO     | monitor loop #6226: job 0:6891571017 is in state 'finished'
[2025-11-22 22:58:50] 2025-11-22 21:57:59,022 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-22 22:58:50] 2025-11-22 21:58:00,704 | INFO     | time since job start (92941s) is within the limit (172800.0s)
[2025-11-22 22:58:50] 2025-11-22 21:58:01,526 | INFO     | monitor loop #6227: job 0:6891571017 is in state 'finished'
[2025-11-22 22:58:50] 2025-11-22 21:58:01,527 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-22 22:58:50] 2025-11-22 21:58:02,518 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-22 22:58:50] 2025-11-22 21:58:02,520 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-11-22 22:58:50] 2025-11-22 21:58:02,522 | INFO     | using path: /var/lib/boinc/slots/12/PanDA_Pilot-6891571017/memory_monitor_summary.json (trf name=prmon)
[2025-11-22 22:58:50] 2025-11-22 21:58:02,523 | INFO     | extracted standard info from prmon json
[2025-11-22 22:58:50] 2025-11-22 21:58:02,523 | INFO     | extracted standard memory fields from prmon json
[2025-11-22 22:58:50] 2025-11-22 21:58:02,523 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-22 22:58:50] 2025-11-22 21:58:02,553 | INFO     | fitting pss+swap vs Time
[2025-11-22 22:58:50] 2025-11-22 21:58:02,556 | INFO     | sum of square deviations: 1080377940127.7421
[2025-11-22 22:58:50] 2025-11-22 21:58:02,633 | INFO     | sum of deviations: 3880973027115.649
[2025-11-22 22:58:50] 2025-11-22 21:58:02,633 | INFO     | mean x: 1763802450.7480211
[2025-11-22 22:58:50] 2025-11-22 21:58:02,633 | INFO     | mean y: 2847937.3812664906
[2025-11-22 22:58:50] 2025-11-22 21:58:02,633 | INFO     | intersect: -6333147534.4479475
[2025-11-22 22:58:50] 2025-11-22 21:58:02,635 | INFO     | chi2: 19.864320400159787
[2025-11-22 22:58:50] 2025-11-22 21:58:02,637 | INFO     | sum of square deviations: 1069723973224.9304
[2025-11-22 22:58:50] 2025-11-22 21:58:02,703 | INFO     | sum of deviations: 4395088366832.8105
[2025-11-22 22:58:50] 2025-11-22 21:58:02,704 | INFO     | mean x: 1763802298.252151
[2025-11-22 22:58:50] 2025-11-22 21:58:02,704 | INFO     | mean y: 2855295.289212442
[2025-11-22 22:58:50] 2025-11-22 21:58:02,704 | INFO     | intersect: -7243936546.788145
[2025-11-22 22:58:50] 2025-11-22 21:58:02,706 | INFO     | chi2: 16.535745741179557
[2025-11-22 22:58:50] 2025-11-22 21:58:02,706 | INFO     | current chi2=16.535745741179557 (change=16.756549390702816 %)
[2025-11-22 22:58:50] 2025-11-22 21:58:02,706 | INFO     | right removable region: 1510
[2025-11-22 22:58:50] 2025-11-22 21:58:02,709 | INFO     | sum of square deviations: 1069722819104.9304
[2025-11-22 22:58:50] 2025-11-22 21:58:02,729 | INFO     | time since job start (92943s) is within the limit (172800.0s)
[2025-11-22 22:58:50] 2025-11-22 21:58:02,791 | INFO     | sum of deviations: 3242009630458.108
[2025-11-22 22:58:50] 2025-11-22 21:58:02,791 | INFO     | mean x: 1763802603.252151
[2025-11-22 22:58:50] 2025-11-22 21:58:02,791 | INFO     | mean y: 2857082.199205824
[2025-11-22 22:58:50] 2025-11-22 21:58:02,791 | INFO     | intersect: -5342700592.970518
[2025-11-22 22:58:50] 2025-11-22 21:58:02,793 | INFO     | chi2: 15.143958684234953
[2025-11-22 22:58:50] 2025-11-22 21:58:02,793 | INFO     | current chi2=15.143958684234953 (change=23.763016407482354 %)
[2025-11-22 22:58:50] 2025-11-22 21:58:02,794 | INFO     | left removable region: 10
[2025-11-22 22:58:50] 2025-11-22 21:58:02,796 | INFO     | sum of square deviations: 1046529997314.5554
[2025-11-22 22:58:50] 2025-11-22 21:58:02,873 | INFO     | sum of deviations: 3323173003621.792
[2025-11-22 22:58:50] 2025-11-22 21:58:02,874 | INFO     | mean x: 1763802572.7613332
[2025-11-22 22:58:50] 2025-11-22 21:58:02,874 | INFO     | mean y: 2873957.6446666666
[2025-11-22 22:58:50] 2025-11-22 21:58:02,874 | INFO     | intersect: -5597941220.668237
[2025-11-22 22:58:50] 2025-11-22 21:58:02,876 | INFO     | chi2: 7.734457769047458
[2025-11-22 22:58:50] 2025-11-22 21:58:02,876 | INFO     | current memory leak: 3.18 B/s (using 1500 data points, chi2=7.73)
[2025-11-22 22:58:50] 2025-11-22 21:58:02,879 | INFO     | could have reported an average CPU frequency of 1999 MHz (51 samples)
[2025-11-22 22:58:50] 2025-11-22 21:58:02,880 | INFO     | ..............................
[2025-11-22 22:58:50] 2025-11-22 21:58:02,880 | INFO     | . Timing measurements:
[2025-11-22 22:58:50] 2025-11-22 21:58:02,880 | INFO     | . get job = 0 s
[2025-11-22 22:58:50] 2025-11-22 21:58:02,880 | INFO     | . initial setup = 8 s
[2025-11-22 22:58:50] 2025-11-22 21:58:02,880 | INFO     | . payload setup = 158 s
[2025-11-22 22:58:50] 2025-11-22 21:58:02,880 | INFO     | . stage-in = 0 s
[2025-11-22 22:58:50] 2025-11-22 21:58:02,880 | INFO     | . payload execution = 92571 s
[2025-11-22 22:58:50] 2025-11-22 21:58:02,880 | INFO     | . stage-out = 4 s
[2025-11-22 22:58:50] 2025-11-22 21:58:02,880 | INFO     | . log creation = 1 s
[2025-11-22 22:58:50] 2025-11-22 21:58:02,881 | INFO     | ..............................
[2025-11-22 22:58:50] 2025-11-22 21:58:03,185 | INFO     | 
[2025-11-22 22:58:50] 2025-11-22 21:58:03,185 | INFO     | job summary report
[2025-11-22 22:58:50] 2025-11-22 21:58:03,186 | INFO     | --------------------------------------------------
[2025-11-22 22:58:50] 2025-11-22 21:58:03,186 | INFO     | PanDA job id: 6891571017
[2025-11-22 22:58:50] 2025-11-22 21:58:03,186 | INFO     | task id: 47493068
[2025-11-22 22:58:50] 2025-11-22 21:58:03,186 | INFO     | errors: (none)
[2025-11-22 22:58:50] 2025-11-22 21:58:03,186 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-22 22:58:50] 2025-11-22 21:58:03,186 | INFO     | pilot state: finished 
[2025-11-22 22:58:50] 2025-11-22 21:58:03,186 | INFO     | transexitcode: 0
[2025-11-22 22:58:50] 2025-11-22 21:58:03,186 | INFO     | exeerrorcode: 0
[2025-11-22 22:58:50] 2025-11-22 21:58:03,186 | INFO     | exeerrordiag: 
[2025-11-22 22:58:50] 2025-11-22 21:58:03,187 | INFO     | exitcode: 0
[2025-11-22 22:58:50] 2025-11-22 21:58:03,187 | INFO     | exitmsg: OK
[2025-11-22 22:58:50] 2025-11-22 21:58:03,187 | INFO     | cpuconsumptiontime: 335332 s
[2025-11-22 22:58:50] 2025-11-22 21:58:03,187 | INFO     | nevents: 1000
[2025-11-22 22:58:50] 2025-11-22 21:58:03,187 | INFO     | neventsw: 0
[2025-11-22 22:58:50] 2025-11-22 21:58:03,187 | INFO     | pid: 4192
[2025-11-22 22:58:50] 2025-11-22 21:58:03,187 | INFO     | pgrp: 4192
[2025-11-22 22:58:50] 2025-11-22 21:58:03,187 | INFO     | corecount: 8
[2025-11-22 22:58:50] 2025-11-22 21:58:03,187 | INFO     | event service: False
[2025-11-22 22:58:50] 2025-11-22 21:58:03,188 | INFO     | sizes: {0: 2298626, 1: 2298825, 12: 2298825, 23: 2298853, 34: 2298881, 45: 2298909, 55: 2299065, 66: 2299093, 77: 2299121, 88: 2299177, 97: 2299467, 99: 2299775, 9
[2025-11-22 22:58:50] 2025-11-22 21:58:03,188 | INFO     | --------------------------------------------------
[2025-11-22 22:58:50] 2025-11-22 21:58:03,188 | INFO     | 
[2025-11-22 22:58:50] 2025-11-22 21:58:03,188 | INFO     | executing command: ls -lF /var/lib/boinc/slots/12
[2025-11-22 22:58:50] 2025-11-22 21:58:03,293 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-22 22:58:50] 2025-11-22 21:58:03,293 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-22 22:58:50] 2025-11-22 21:58:03,294 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-22 22:58:50] 2025-11-22 21:58:03,294 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-22 22:58:50] 2025-11-22 21:58:03,294 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-22 22:58:50] 2025-11-22 21:58:03,294 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-22 22:58:50] 2025-11-22 21:58:03,294 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-22 22:58:50] 2025-11-22 21:58:03,294 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-22 22:58:50] 2025-11-22 21:58:03,294 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-22 22:58:50] 2025-11-22 21:58:03,294 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-22 22:58:50] 2025-11-22 21:58:03,295 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-22 22:58:50] 2025-11-22 21:58:03,295 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-22 22:58:50] 2025-11-22 21:58:03,295 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-22 22:58:50] 2025-11-22 21:58:03,295 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-22 22:58:50] 2025-11-22 21:58:03,295 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-22 22:58:50] 2025-11-22 21:58:03,295 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-22 22:58:50] 2025-11-22 21:58:03,295 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-22 22:58:50] 2025-11-22 21:58:03,295 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-22 22:58:50] 2025-11-22 21:58:03,295 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-22 22:58:50] 2025-11-22 21:58:03,295 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-22 22:58:50] 2025-11-22 21:58:03,296 | INFO     | job 6891571017 has completed (purged errors)
[2025-11-22 22:58:50] 2025-11-22 21:58:03,296 | INFO     | overall cleanup function is called
[2025-11-22 22:58:50] 2025-11-22 21:58:03,908 | INFO     | PID=29999 has CPU usage=15.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-22 22:58:50] 2025-11-22 21:58:03,909 | INFO     | .. there are 9 such processes running
[2025-11-22 22:58:50] 2025-11-22 21:58:04,318 | INFO     | --- collectZombieJob: --- 10, [4192]
[2025-11-22 22:58:50] 2025-11-22 21:58:04,318 | INFO     | zombie collector waiting for pid 4192
[2025-11-22 22:58:50] 2025-11-22 21:58:04,319 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-22 22:58:50] 2025-11-22 21:58:04,319 | INFO     | collected zombie processes
[2025-11-22 22:58:50] 2025-11-22 21:58:04,319 | INFO     | will attempt to kill all subprocesses of pid=4192
[2025-11-22 22:58:50] 2025-11-22 21:58:04,419 | INFO     | process IDs to be killed: [4192] (in reverse order)
[2025-11-22 22:58:50] 2025-11-22 21:58:04,503 | WARNING  | found no corresponding commands to process id(s)
[2025-11-22 22:58:50] 2025-11-22 21:58:04,504 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-22 22:58:50] 2025-11-22 21:58:04,507 | INFO     | did not find any defunct processes belonging to 4192
[2025-11-22 22:58:50] 2025-11-22 21:58:04,511 | INFO     | did not find any defunct processes belonging to 4192
[2025-11-22 22:58:50] 2025-11-22 21:58:04,513 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-22 22:58:50] 2025-11-22 21:58:04,514 | INFO     | ready for new job
[2025-11-22 22:58:50] 2025-11-22 21:58:04,514 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-22 22:58:50] 2025-11-22 21:58:04,520 | INFO     | ***************************************
[2025-11-22 22:58:50] 2025-11-22 21:58:04,521 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-22 22:58:50] 2025-11-22 21:58:04,521 | INFO     | ***************************************
[2025-11-22 22:58:50] 2025-11-22 21:58:04,521 | INFO     | 
[2025-11-22 22:58:50] 2025-11-22 21:58:04,522 | INFO     | pilot is running in a VM
[2025-11-22 22:58:50] 2025-11-22 21:58:04,522 | INFO     | architecture information:
[2025-11-22 22:58:50] 2025-11-22 21:58:04,523 | INFO     | executing command: cat /etc/os-release
[2025-11-22 22:58:50] 2025-11-22 21:58:04,561 | INFO     | cat /etc/os-release:
[2025-11-22 22:58:50] NAME="CentOS Linux"
[2025-11-22 22:58:50] VERSION="7 (Core)"
[2025-11-22 22:58:50] ID="centos"
[2025-11-22 22:58:50] ID_LIKE="rhel fedora"
[2025-11-22 22:58:50] VERSION_ID="7"
[2025-11-22 22:58:50] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-22 22:58:50] ANSI_COLOR="0;31"
[2025-11-22 22:58:50] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-22 22:58:50] HOME_URL="https://www.centos.org/"
[2025-11-22 22:58:50] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-22 22:58:50] 
[2025-11-22 22:58:50] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-22 22:58:50] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-22 22:58:50] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-22 22:58:50] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-22 22:58:50] 
[2025-11-22 22:58:50] 2025-11-22 21:58:04,561 | INFO     | ***************************************
[2025-11-22 22:58:50] 2025-11-22 21:58:05,065 | INFO     | executing command: df -mP /var/lib/boinc/slots/12
[2025-11-22 22:58:50] 2025-11-22 21:58:05,101 | INFO     | sufficient remaining disk space (495247687680 B)
[2025-11-22 22:58:50] 2025-11-22 21:58:05,102 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-22 22:58:50] 2025-11-22 21:58:05,102 | INFO     | current server update state: UPDATING_FINAL
[2025-11-22 22:58:50] 2025-11-22 21:58:05,102 | INFO     | update_server=False
[2025-11-22 22:58:50] 2025-11-22 21:58:05,102 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-22 22:58:50] 2025-11-22 21:58:05,102 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-22 22:58:50] 2025-11-22 21:58:05,103 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-22 22:58:50] 2025-11-22 21:58:05,103 | INFO     | aborting loop
[2025-11-22 22:58:50] 2025-11-22 21:58:05,323 | INFO     | all data control threads have been joined
[2025-11-22 22:58:50] 2025-11-22 21:58:05,348 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-22 22:58:50] 2025-11-22 21:58:05,363 | INFO     | all payload control threads have been joined
[2025-11-22 22:58:50] 2025-11-22 21:58:06,108 | INFO     | [job] retrieve thread has finished
[2025-11-22 22:58:50] 2025-11-22 21:58:06,109 | INFO     | [job] job monitor thread has finished
[2025-11-22 22:58:50] 2025-11-22 21:58:06,191 | INFO     | [data] copytool_in thread has finished
[2025-11-22 22:58:50] 2025-11-22 21:58:06,203 | INFO     | [job] validate thread has finished
[2025-11-22 22:58:50] 2025-11-22 21:58:06,204 | INFO     | [payload] execute_payloads thread has finished
[2025-11-22 22:58:50] 2025-11-22 21:58:06,205 | INFO     | [payload] validate_pre thread has finished
[2025-11-22 22:58:50] 2025-11-22 21:58:06,281 | INFO     | [job] create_data_payload thread has finished
[2025-11-22 22:58:50] 2025-11-22 21:58:06,329 | INFO     | [data] control thread has finished
[2025-11-22 22:58:50] 2025-11-22 21:58:06,343 | INFO     | [payload] validate_post thread has finished
[2025-11-22 22:58:50] 2025-11-22 21:58:06,368 | INFO     | [payload] control thread has finished
[2025-11-22 22:58:50] 2025-11-22 21:58:06,401 | INFO     | all job control threads have been joined
[2025-11-22 22:58:50] 2025-11-22 21:58:06,449 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-22 22:58:50] 2025-11-22 21:58:07,355 | INFO     | [data] copytool_out thread has finished
[2025-11-22 22:58:50] 2025-11-22 21:58:07,406 | INFO     | [job] control thread has finished
[2025-11-22 22:58:50] 2025-11-22 21:58:07,503 | INFO     | [payload] failed_post thread has finished
[2025-11-22 22:58:50] 2025-11-22 21:58:08,038 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-22 22:58:50] 2025-11-22 21:58:09,044 | INFO     | [job] queue monitor thread has finished
[2025-11-22 22:58:50] 2025-11-22 21:58:09,111 | INFO     | [data] queue_monitor thread has finished
[2025-11-22 22:58:50] 2025-11-22 21:58:36,066 | INFO     | PID=29999 has CPU usage=1.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-22 22:58:50] 2025-11-22 21:58:36,066 | INFO     | .. there are 9 such processes running
[2025-11-22 22:58:50] 2025-11-22 21:58:36,068 | INFO     | found 0 job(s) in 20 queues
[2025-11-22 22:58:50] 2025-11-22 21:58:36,068 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-22 22:58:50] 2025-11-22 21:58:36,068 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-22 22:58:50] 2025-11-22 21:58:41,538 | INFO     | [monitor] cgroup control has ended
[2025-11-22 22:58:50] 2025-11-22 21:58:42,950 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140131224098624)>', '<ExcThread(monitor, started 140130413176576)>']
[2025-11-22 22:58:50] 2025-11-22 21:58:43,110 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-22 22:58:50] 2025-11-22 21:58:43,110 | INFO     | [monitor] control thread has ended
[2025-11-22 22:58:50] 2025-11-22 21:58:47,975 | INFO     | all workflow threads have been joined
[2025-11-22 22:58:50] 2025-11-22 21:58:47,975 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-22 22:58:50] 2025-11-22 21:58:47,976 | INFO     | traces error code: 0
[2025-11-22 22:58:50] 2025-11-22 21:58:47,976 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-22 22:58:50] 2025-11-22 21:58:48,376 [wrapper] ==== pilot stdout END ====
[2025-11-22 22:58:50] 2025-11-22 21:58:48,462 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-22 22:58:50] 2025-11-22 21:58:48,522 [wrapper] pilotpid: 29999
[2025-11-22 22:58:50] 2025-11-22 21:58:48,571 [wrapper] Pilot exit status: 0
[2025-11-22 22:58:50] 2025-11-22 21:58:48,798 [wrapper] pandaids: 6891571017
[2025-11-22 22:58:50] 2025-11-22 21:58:49,426 [wrapper] cleanup supervisor_pilot 12011 30000
[2025-11-22 22:58:50] 2025-11-22 21:58:49,491 [wrapper] Test setup, not cleaning
[2025-11-22 22:58:50] 2025-11-22 21:58:49,529 [wrapper] apfmon messages muted
[2025-11-22 22:58:50] 2025-11-22 21:58:49,589 [wrapper] ==== wrapper stdout END ====
[2025-11-22 22:58:50] 2025-11-22 21:58:49,651 [wrapper] ==== wrapper stderr END ====
[2025-11-22 22:58:50]  *** Error codes and diagnostics ***
[2025-11-22 22:58:50]     "exeErrorCode": 0,
[2025-11-22 22:58:50]     "exeErrorDiag": "",
[2025-11-22 22:58:50]     "pilotErrorCode": 0,
[2025-11-22 22:58:50]     "pilotErrorDiag": "",
[2025-11-22 22:58:50]  *** Listing of results directory ***
[2025-11-22 22:58:50] total 1320956
[2025-11-22 22:58:50] -rw-r--r--. 1 boinc boinc    576529 Nov 18 16:15 pilot3.tar.gz
[2025-11-22 22:58:50] -rw-r--r--. 1 boinc boinc      5112 Nov 18 16:42 queuedata.json
[2025-11-22 22:58:50] -rwx------. 1 boinc boinc     36292 Nov 18 16:43 runpilot2-wrapper.sh
[2025-11-22 22:58:50] -rw-r--r--. 1 boinc boinc       100 Nov 21 21:04 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-22 22:58:50] -rwxr-xr-x. 1 boinc boinc      7986 Nov 21 21:04 run_atlas
[2025-11-22 22:58:50] -rw-r--r--. 1 boinc boinc       105 Nov 21 21:04 job.xml
[2025-11-22 22:58:50] -rw-r--r--. 1 boinc boinc      6389 Nov 21 21:04 init_data.xml
[2025-11-22 22:58:50] -rw-r--r--. 2 boinc boinc 410743618 Nov 21 21:04 EVNT.47493065._000261.pool.root.1
[2025-11-22 22:58:50] -rw-r--r--. 2 boinc boinc     15120 Nov 21 21:04 start_atlas.sh
[2025-11-22 22:58:50] drwxrwx--x. 2 boinc boinc        68 Nov 21 21:04 shared
[2025-11-22 22:58:50] -rw-r--r--. 2 boinc boinc    590103 Nov 21 21:04 input.tar.gz
[2025-11-22 22:58:50] -rw-r--r--. 1 boinc boinc         0 Nov 21 21:04 boinc_lockfile
[2025-11-22 22:58:50] -rw-r--r--. 1 boinc boinc      2773 Nov 21 21:05 pandaJob.out
[2025-11-22 22:58:50] -rw-------. 1 boinc boinc    989798 Nov 21 21:08 agis_schedconf.cvmfs.json
[2025-11-22 22:58:50] drwx------. 5 boinc boinc      4096 Nov 21 21:08 pilot3
[2025-11-22 22:58:50] -rw-r--r--. 1 boinc boinc       533 Nov 22 22:36 boinc_task_state.xml
[2025-11-22 22:58:50] -rw-------. 1 boinc boinc 908082363 Nov 22 22:56 HITS.47493068._002605.pool.root.1
[2025-11-22 22:58:50] -rw-------. 1 boinc boinc      1031 Nov 22 22:57 memory_monitor_summary.json
[2025-11-22 22:58:50] -rw-------. 1 boinc boinc   1526164 Nov 22 22:57 agis_ddmendpoints.agis.ALL.json
[2025-11-22 22:58:50] -rw-------. 1 boinc boinc   2591351 Nov 22 22:57 log.47493068._002605.job.log.tgz.1
[2025-11-22 22:58:50] -rw-------. 1 boinc boinc      8622 Nov 22 22:58 heartbeat.json
[2025-11-22 22:58:50] -rw-r--r--. 1 boinc boinc        29 Nov 22 22:58 wrapper_checkpoint.txt
[2025-11-22 22:58:50] -rw-r--r--. 1 boinc boinc      8192 Nov 22 22:58 boinc_mmap_file
[2025-11-22 22:58:50] -rw-------. 1 boinc boinc        95 Nov 22 22:58 pilot_heartbeat.json
[2025-11-22 22:58:50] -rw-------. 1 boinc boinc      4885 Nov 22 22:58 pilotlog.txt
[2025-11-22 22:58:50] -rw-------. 1 boinc boinc  12371558 Nov 22 22:58 log.47493068._002605.job.log.1
[2025-11-22 22:58:50] -rw-------. 1 boinc boinc       353 Nov 22 22:58 output.list
[2025-11-22 22:58:50] -rw-r--r--. 1 boinc boinc       620 Nov 22 22:58 runtime_log
[2025-11-22 22:58:50] -rw-------. 1 boinc boinc  14981120 Nov 22 22:58 result.tar.gz
[2025-11-22 22:58:50] -rw-r--r--. 1 boinc boinc      8717 Nov 22 22:58 runtime_log.err
[2025-11-22 22:58:50] -rw-------. 1 boinc boinc       662 Nov 22 22:58 HwNNDmY2cf8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmXeFKDmGZvjfn.diag
[2025-11-22 22:58:50] -rw-r--r--. 1 boinc boinc     21504 Nov 22 22:58 stderr.txt
[2025-11-22 22:58:50] HITS file was successfully produced:
[2025-11-22 22:58:50] -rw-------. 1 boinc boinc 908082363 Nov 22 22:56 shared/HITS.pool.root.1
[2025-11-22 22:58:50]  *** Contents of shared directory: ***
[2025-11-22 22:58:50] total 1303148
[2025-11-22 22:58:50] -rw-r--r--. 2 boinc boinc 410743618 Nov 21 21:04 ATLAS.root_0
[2025-11-22 22:58:50] -rw-r--r--. 2 boinc boinc     15120 Nov 21 21:04 start_atlas.sh
[2025-11-22 22:58:50] -rw-r--r--. 2 boinc boinc    590103 Nov 21 21:04 input.tar.gz
[2025-11-22 22:58:50] -rw-------. 1 boinc boinc 908082363 Nov 22 22:56 HITS.pool.root.1
[2025-11-22 22:58:50] -rw-------. 1 boinc boinc  14981120 Nov 22 22:58 result.tar.gz
22:58:52 (26194): run_atlas exited; CPU time 335960.018631
22:58:52 (26194): called boinc_finish(0)

</stderr_txt>
]]>

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