Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
21:46:09 (22958): wrapper (7.7.26015): starting
21:46:09 (22958): wrapper: running run_atlas (--nthreads 8)
[2025-11-19 21:46:09] Arguments: --nthreads 8
[2025-11-19 21:46:09] Threads: 8
[2025-11-19 21:46:09] Checking for CVMFS
[2025-11-19 21:46:10] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-19 21:46:11] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-19 21:46:11] Running cvmfs_config stat atlas.cern.ch
[2025-11-19 21:46:12] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-19 21:46:12] 2.11.2.0 1205 275614 145620 153056 2 302 13516226 25165824 4143 130560 3 126349333 99.871 72050221 2991 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-19 21:46:12] CVMFS is ok
[2025-11-19 21:46:12] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-19 21:46:12] Checking for apptainer binary...
[2025-11-19 21:46:12] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-19 21:46:12] Running /usr/bin/apptainer --version
[2025-11-19 21:46:12] apptainer version 1.3.2-1.el7
[2025-11-19 21:46:12] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-19 21:46:15] cg-vwn325.simple-grid.lan
[2025-11-19 21:46:15] apptainer works
[2025-11-19 21:46:16] Set ATHENA_PROC_NUMBER=8
[2025-11-19 21:46:16] Set ATHENA_CORE_NUMBER=8
[2025-11-19 21:46:16] Starting ATLAS job with PandaID=6891571644
[2025-11-19 21:46:16] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/19 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-20 23:14:25]  *** The last 200 lines of the pilot log: ***
[2025-11-20 23:14:25] 2025-11-20 22:14:08,004 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-20 23:14:25] 2025-11-20 22:14:08,098 | INFO     | time since job start (91471s) is within the limit (172800.0s)
[2025-11-20 23:14:25] 2025-11-20 22:14:09,299 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-20 23:14:25] 2025-11-20 22:14:09,300 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-11-20 23:14:25] 2025-11-20 22:14:09,302 | INFO     | using path: /var/lib/boinc/slots/19/PanDA_Pilot-6891571644/memory_monitor_summary.json (trf name=prmon)
[2025-11-20 23:14:25] 2025-11-20 22:14:09,303 | INFO     | extracted standard info from prmon json
[2025-11-20 23:14:25] 2025-11-20 22:14:09,303 | INFO     | extracted standard memory fields from prmon json
[2025-11-20 23:14:25] 2025-11-20 22:14:09,303 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-20 23:14:25] 2025-11-20 22:14:09,334 | INFO     | fitting pss+swap vs Time
[2025-11-20 23:14:25] 2025-11-20 22:14:09,336 | INFO     | sum of square deviations: 1029877622121.8632
[2025-11-20 23:14:25] 2025-11-20 22:14:09,415 | INFO     | sum of deviations: 4333363466103.3496
[2025-11-20 23:14:25] 2025-11-20 22:14:09,415 | INFO     | mean x: 1763631346.8203754
[2025-11-20 23:14:25] 2025-11-20 22:14:09,415 | INFO     | mean y: 2849581.5609919573
[2025-11-20 23:14:25] 2025-11-20 22:14:09,415 | INFO     | intersect: -7417891952.991688
[2025-11-20 23:14:25] 2025-11-20 22:14:09,417 | INFO     | chi2: 18.299813146193085
[2025-11-20 23:14:25] 2025-11-20 22:14:09,420 | INFO     | sum of square deviations: 1019558903898.1143
[2025-11-20 23:14:25] 2025-11-20 22:14:09,486 | INFO     | sum of deviations: 4820459187603.363
[2025-11-20 23:14:25] 2025-11-20 22:14:09,487 | INFO     | mean x: 1763631194.324815
[2025-11-20 23:14:25] 2025-11-20 22:14:09,487 | INFO     | mean y: 2856779.133826496
[2025-11-20 23:14:25] 2025-11-20 22:14:09,487 | INFO     | intersect: -8335565024.376326
[2025-11-20 23:14:25] 2025-11-20 22:14:09,489 | INFO     | chi2: 15.238528604109764
[2025-11-20 23:14:25] 2025-11-20 22:14:09,489 | INFO     | current chi2=15.238528604109764 (change=16.72850163893701 %)
[2025-11-20 23:14:25] 2025-11-20 22:14:09,489 | INFO     | right removable region: 1486
[2025-11-20 23:14:25] 2025-11-20 22:14:09,492 | INFO     | sum of square deviations: 1019557702198.1149
[2025-11-20 23:14:25] 2025-11-20 22:14:09,564 | INFO     | sum of deviations: 3690791124808.8247
[2025-11-20 23:14:25] 2025-11-20 22:14:09,565 | INFO     | mean x: 1763631499.324815
[2025-11-20 23:14:25] 2025-11-20 22:14:09,565 | INFO     | mean y: 2859077.1432414255
[2025-11-20 23:14:25] 2025-11-20 22:14:09,565 | INFO     | intersect: -6381473532.092912
[2025-11-20 23:14:25] 2025-11-20 22:14:09,567 | INFO     | chi2: 13.346756602934063
[2025-11-20 23:14:25] 2025-11-20 22:14:09,567 | INFO     | current chi2=13.346756602934063 (change=27.06615911151753 %)
[2025-11-20 23:14:25] 2025-11-20 22:14:09,570 | INFO     | sum of square deviations: 1009306946361.7948
[2025-11-20 23:14:25] 2025-11-20 22:14:09,634 | INFO     | sum of deviations: 3137676803257.261
[2025-11-20 23:14:25] 2025-11-20 22:14:09,635 | INFO     | mean x: 1763631651.8292847
[2025-11-20 23:14:25] 2025-11-20 22:14:09,635 | INFO     | mean y: 2867305.293522267
[2025-11-20 23:14:25] 2025-11-20 22:14:09,635 | INFO     | intersect: -5479811817.625571
[2025-11-20 23:14:25] 2025-11-20 22:14:09,637 | INFO     | chi2: 9.809646439932305
[2025-11-20 23:14:25] 2025-11-20 22:14:09,637 | INFO     | current chi2=9.809646439932305 (change=26.501645817263075 %)
[2025-11-20 23:14:25] 2025-11-20 22:14:09,640 | INFO     | sum of square deviations: 999125392649.4404
[2025-11-20 23:14:25] 2025-11-20 22:14:09,714 | INFO     | sum of deviations: 2892112571915.9707
[2025-11-20 23:14:25] 2025-11-20 22:14:09,716 | INFO     | mean x: 1763631804.3317535
[2025-11-20 23:14:25] 2025-11-20 22:14:09,716 | INFO     | mean y: 2870979.9878131347
[2025-11-20 23:14:25] 2025-11-20 22:14:09,716 | INFO     | intersect: -5102215679.868853
[2025-11-20 23:14:25] 2025-11-20 22:14:09,718 | INFO     | chi2: 9.041937988421783
[2025-11-20 23:14:25] 2025-11-20 22:14:09,718 | INFO     | current chi2=9.041937988421783 (change=7.826056282573014 %)
[2025-11-20 23:14:25] 2025-11-20 22:14:09,718 | INFO     | left removable region: 30
[2025-11-20 23:14:25] 2025-11-20 22:14:09,720 | INFO     | sum of square deviations: 957112902525.778
[2025-11-20 23:14:25] 2025-11-20 22:14:09,789 | INFO     | sum of deviations: 3197061878514.52
[2025-11-20 23:14:25] 2025-11-20 22:14:09,789 | INFO     | mean x: 1763632078.8337913
[2025-11-20 23:14:25] 2025-11-20 22:14:09,789 | INFO     | mean y: 2884559.729395604
[2025-11-20 23:14:25] 2025-11-20 22:14:09,790 | INFO     | intersect: -5888208196.501595
[2025-11-20 23:14:25] 2025-11-20 22:14:09,791 | INFO     | chi2: 4.9667370736296155
[2025-11-20 23:14:25] 2025-11-20 22:14:09,792 | INFO     | current memory leak: 3.34 B/s (using 1456 data points, chi2=4.97)
[2025-11-20 23:14:25] 2025-11-20 22:14:09,794 | INFO     | could have reported an average CPU frequency of 1999 MHz (50 samples)
[2025-11-20 23:14:25] 2025-11-20 22:14:09,795 | INFO     | ..............................
[2025-11-20 23:14:25] 2025-11-20 22:14:09,795 | INFO     | . Timing measurements:
[2025-11-20 23:14:25] 2025-11-20 22:14:09,795 | INFO     | . get job = 0 s
[2025-11-20 23:14:25] 2025-11-20 22:14:09,795 | INFO     | . initial setup = 5 s
[2025-11-20 23:14:25] 2025-11-20 22:14:09,795 | INFO     | . payload setup = 138 s
[2025-11-20 23:14:25] 2025-11-20 22:14:09,795 | INFO     | . stage-in = 0 s
[2025-11-20 23:14:25] 2025-11-20 22:14:09,795 | INFO     | . payload execution = 91109 s
[2025-11-20 23:14:25] 2025-11-20 22:14:09,796 | INFO     | . stage-out = 4 s
[2025-11-20 23:14:25] 2025-11-20 22:14:09,796 | INFO     | . log creation = 1 s
[2025-11-20 23:14:25] 2025-11-20 22:14:09,796 | INFO     | ..............................
[2025-11-20 23:14:25] 2025-11-20 22:14:10,106 | INFO     | time since job start (91473s) is within the limit (172800.0s)
[2025-11-20 23:14:25] 2025-11-20 22:14:10,250 | INFO     | 
[2025-11-20 23:14:25] 2025-11-20 22:14:10,250 | INFO     | job summary report
[2025-11-20 23:14:25] 2025-11-20 22:14:10,251 | INFO     | --------------------------------------------------
[2025-11-20 23:14:25] 2025-11-20 22:14:10,251 | INFO     | PanDA job id: 6891571644
[2025-11-20 23:14:25] 2025-11-20 22:14:10,251 | INFO     | task id: 47493068
[2025-11-20 23:14:25] 2025-11-20 22:14:10,251 | INFO     | errors: (none)
[2025-11-20 23:14:25] 2025-11-20 22:14:10,251 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-20 23:14:25] 2025-11-20 22:14:10,251 | INFO     | pilot state: finished 
[2025-11-20 23:14:25] 2025-11-20 22:14:10,251 | INFO     | transexitcode: 0
[2025-11-20 23:14:25] 2025-11-20 22:14:10,251 | INFO     | exeerrorcode: 0
[2025-11-20 23:14:25] 2025-11-20 22:14:10,251 | INFO     | exeerrordiag: 
[2025-11-20 23:14:25] 2025-11-20 22:14:10,251 | INFO     | exitcode: 0
[2025-11-20 23:14:25] 2025-11-20 22:14:10,251 | INFO     | exitmsg: OK
[2025-11-20 23:14:25] 2025-11-20 22:14:10,252 | INFO     | cpuconsumptiontime: 338474 s
[2025-11-20 23:14:25] 2025-11-20 22:14:10,252 | INFO     | nevents: 1000
[2025-11-20 23:14:25] 2025-11-20 22:14:10,252 | INFO     | neventsw: 0
[2025-11-20 23:14:25] 2025-11-20 22:14:10,252 | INFO     | pid: 888
[2025-11-20 23:14:25] 2025-11-20 22:14:10,252 | INFO     | pgrp: 888
[2025-11-20 23:14:25] 2025-11-20 22:14:10,252 | INFO     | corecount: 8
[2025-11-20 23:14:25] 2025-11-20 22:14:10,252 | INFO     | event service: False
[2025-11-20 23:14:25] 2025-11-20 22:14:10,252 | INFO     | sizes: {0: 2297030, 1: 2297229, 12: 2297229, 23: 2297257, 34: 2297285, 45: 2297313, 55: 2297469, 66: 2297497, 77: 2297525, 88: 2297581, 98: 2297609, 102: 2298179, 
[2025-11-20 23:14:25] 2025-11-20 22:14:10,252 | INFO     | --------------------------------------------------
[2025-11-20 23:14:25] 2025-11-20 22:14:10,252 | INFO     | 
[2025-11-20 23:14:25] 2025-11-20 22:14:10,253 | INFO     | executing command: ls -lF /var/lib/boinc/slots/19
[2025-11-20 23:14:25] 2025-11-20 22:14:10,289 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-20 23:14:25] 2025-11-20 22:14:10,290 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-20 23:14:25] 2025-11-20 22:14:10,290 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-20 23:14:25] 2025-11-20 22:14:10,290 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-20 23:14:25] 2025-11-20 22:14:10,290 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-20 23:14:25] 2025-11-20 22:14:10,290 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-20 23:14:25] 2025-11-20 22:14:10,290 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-20 23:14:25] 2025-11-20 22:14:10,290 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-20 23:14:25] 2025-11-20 22:14:10,291 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-20 23:14:25] 2025-11-20 22:14:10,291 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-20 23:14:25] 2025-11-20 22:14:10,291 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-20 23:14:25] 2025-11-20 22:14:10,291 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-20 23:14:25] 2025-11-20 22:14:10,291 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-20 23:14:25] 2025-11-20 22:14:10,291 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-20 23:14:25] 2025-11-20 22:14:10,291 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-20 23:14:25] 2025-11-20 22:14:10,291 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-20 23:14:25] 2025-11-20 22:14:10,291 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-20 23:14:25] 2025-11-20 22:14:10,291 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-20 23:14:25] 2025-11-20 22:14:10,292 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-20 23:14:25] 2025-11-20 22:14:10,292 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-20 23:14:25] 2025-11-20 22:14:10,292 | INFO     | job 6891571644 has completed (purged errors)
[2025-11-20 23:14:25] 2025-11-20 22:14:10,292 | INFO     | overall cleanup function is called
[2025-11-20 23:14:25] 2025-11-20 22:14:11,311 | INFO     | --- collectZombieJob: --- 10, [888]
[2025-11-20 23:14:25] 2025-11-20 22:14:11,312 | INFO     | zombie collector waiting for pid 888
[2025-11-20 23:14:25] 2025-11-20 22:14:11,312 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-20 23:14:25] 2025-11-20 22:14:11,312 | INFO     | collected zombie processes
[2025-11-20 23:14:25] 2025-11-20 22:14:11,312 | INFO     | will attempt to kill all subprocesses of pid=888
[2025-11-20 23:14:25] 2025-11-20 22:14:11,417 | INFO     | process IDs to be killed: [888] (in reverse order)
[2025-11-20 23:14:25] 2025-11-20 22:14:11,490 | WARNING  | found no corresponding commands to process id(s)
[2025-11-20 23:14:25] 2025-11-20 22:14:11,490 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-20 23:14:25] 2025-11-20 22:14:11,494 | INFO     | did not find any defunct processes belonging to 888
[2025-11-20 23:14:25] 2025-11-20 22:14:11,499 | INFO     | did not find any defunct processes belonging to 888
[2025-11-20 23:14:25] 2025-11-20 22:14:11,500 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-20 23:14:25] 2025-11-20 22:14:11,501 | INFO     | ready for new job
[2025-11-20 23:14:25] 2025-11-20 22:14:11,501 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-20 23:14:25] 2025-11-20 22:14:11,508 | INFO     | ***************************************
[2025-11-20 23:14:25] 2025-11-20 22:14:11,509 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-20 23:14:25] 2025-11-20 22:14:11,509 | INFO     | ***************************************
[2025-11-20 23:14:25] 2025-11-20 22:14:11,509 | INFO     | 
[2025-11-20 23:14:25] 2025-11-20 22:14:11,509 | INFO     | pilot is running in a VM
[2025-11-20 23:14:25] 2025-11-20 22:14:11,509 | INFO     | architecture information:
[2025-11-20 23:14:25] 2025-11-20 22:14:11,510 | INFO     | executing command: cat /etc/os-release
[2025-11-20 23:14:25] 2025-11-20 22:14:11,530 | INFO     | cat /etc/os-release:
[2025-11-20 23:14:25] NAME="CentOS Linux"
[2025-11-20 23:14:25] VERSION="7 (Core)"
[2025-11-20 23:14:25] ID="centos"
[2025-11-20 23:14:25] ID_LIKE="rhel fedora"
[2025-11-20 23:14:25] VERSION_ID="7"
[2025-11-20 23:14:25] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-20 23:14:25] ANSI_COLOR="0;31"
[2025-11-20 23:14:25] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-20 23:14:25] HOME_URL="https://www.centos.org/"
[2025-11-20 23:14:25] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-20 23:14:25] 
[2025-11-20 23:14:25] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-20 23:14:25] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-20 23:14:25] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-20 23:14:25] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-20 23:14:25] 
[2025-11-20 23:14:25] 2025-11-20 22:14:11,531 | INFO     | ***************************************
[2025-11-20 23:14:25] 2025-11-20 22:14:12,033 | INFO     | executing command: df -mP /var/lib/boinc/slots/19
[2025-11-20 23:14:25] 2025-11-20 22:14:12,059 | INFO     | sufficient remaining disk space (494847131648 B)
[2025-11-20 23:14:25] 2025-11-20 22:14:12,060 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-20 23:14:25] 2025-11-20 22:14:12,060 | INFO     | current server update state: UPDATING_FINAL
[2025-11-20 23:14:25] 2025-11-20 22:14:12,060 | INFO     | update_server=False
[2025-11-20 23:14:25] 2025-11-20 22:14:12,061 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-20 23:14:25] 2025-11-20 22:14:12,061 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-20 23:14:25] 2025-11-20 22:14:12,061 | INFO     | aborting loop
[2025-11-20 23:14:25] 2025-11-20 22:14:12,064 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-20 23:14:25] 2025-11-20 22:14:12,065 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-11-20 23:14:25] 2025-11-20 22:14:12,065 | INFO     | found 0 job(s) in 20 queues
[2025-11-20 23:14:25] 2025-11-20 22:14:12,065 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-20 23:14:25] 2025-11-20 22:14:12,065 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-20 23:14:25] 2025-11-20 22:14:13,032 | INFO     | all data control threads have been joined
[2025-11-20 23:14:25] 2025-11-20 22:14:13,066 | INFO     | [job] retrieve thread has finished
[2025-11-20 23:14:25] 2025-11-20 22:14:13,067 | INFO     | [job] job monitor thread has finished
[2025-11-20 23:14:25] 2025-11-20 22:14:13,201 | INFO     | all payload control threads have been joined
[2025-11-20 23:14:25] 2025-11-20 22:14:13,370 | INFO     | [payload] validate_post thread has finished
[2025-11-20 23:14:25] 2025-11-20 22:14:13,400 | INFO     | all job control threads have been joined
[2025-11-20 23:14:25] 2025-11-20 22:14:13,503 | INFO     | [job] create_data_payload thread has finished
[2025-11-20 23:14:25] 2025-11-20 22:14:13,522 | INFO     | [payload] execute_payloads thread has finished
[2025-11-20 23:14:25] 2025-11-20 22:14:13,724 | INFO     | [payload] validate_pre thread has finished
[2025-11-20 23:14:25] 2025-11-20 22:14:13,877 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-20 23:14:25] 2025-11-20 22:14:14,004 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-20 23:14:25] 2025-11-20 22:14:14,038 | INFO     | [data] control thread has finished
[2025-11-20 23:14:25] 2025-11-20 22:14:14,073 | INFO     | [data] copytool_out thread has finished
[2025-11-20 23:14:25] 2025-11-20 22:14:14,207 | INFO     | [payload] control thread has finished
[2025-11-20 23:14:25] 2025-11-20 22:14:14,405 | INFO     | [job] control thread has finished
[2025-11-20 23:14:25] 2025-11-20 22:14:14,472 | INFO     | [payload] failed_post thread has finished
[2025-11-20 23:14:25] 2025-11-20 22:14:14,496 | INFO     | [data] copytool_in thread has finished
[2025-11-20 23:14:25] 2025-11-20 22:14:14,537 | INFO     | [job] validate thread has finished
[2025-11-20 23:14:25] 2025-11-20 22:14:14,937 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-20 23:14:25] 2025-11-20 22:14:15,943 | INFO     | [job] queue monitor thread has finished
[2025-11-20 23:14:25] 2025-11-20 22:14:16,543 | INFO     | [monitor] cgroup control has ended
[2025-11-20 23:14:25] 2025-11-20 22:14:17,884 | INFO     | [data] queue_monitor thread has finished
[2025-11-20 23:14:25] 2025-11-20 22:14:19,880 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139763783132992)>', '<ExcThread(monitor, started 139763134756608)>']
[2025-11-20 23:14:25] 2025-11-20 22:14:20,114 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-20 23:14:25] 2025-11-20 22:14:20,115 | INFO     | [monitor] control thread has ended
[2025-11-20 23:14:25] 2025-11-20 22:14:24,906 | INFO     | all workflow threads have been joined
[2025-11-20 23:14:25] 2025-11-20 22:14:24,906 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-20 23:14:25] 2025-11-20 22:14:24,907 | INFO     | traces error code: 0
[2025-11-20 23:14:25] 2025-11-20 22:14:24,907 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-20 23:14:25] 2025-11-20 22:14:25,156 [wrapper] ==== pilot stdout END ====
[2025-11-20 23:14:25] 2025-11-20 22:14:25,170 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-20 23:14:25] 2025-11-20 22:14:25,198 [wrapper] pilotpid: 26719
[2025-11-20 23:14:25] 2025-11-20 22:14:25,208 [wrapper] Pilot exit status: 0
[2025-11-20 23:14:25] 2025-11-20 22:14:25,306 [wrapper] pandaids: 6891571644
[2025-11-20 23:14:25] 2025-11-20 22:14:25,362 [wrapper] cleanup supervisor_pilot 24041 26720
[2025-11-20 23:14:25] 2025-11-20 22:14:25,378 [wrapper] Test setup, not cleaning
[2025-11-20 23:14:25] 2025-11-20 22:14:25,384 [wrapper] apfmon messages muted
[2025-11-20 23:14:25] 2025-11-20 22:14:25,396 [wrapper] ==== wrapper stdout END ====
[2025-11-20 23:14:25] 2025-11-20 22:14:25,409 [wrapper] ==== wrapper stderr END ====
[2025-11-20 23:14:25]  *** Error codes and diagnostics ***
[2025-11-20 23:14:25]     "exeErrorCode": 0,
[2025-11-20 23:14:25]     "exeErrorDiag": "",
[2025-11-20 23:14:25]     "pilotErrorCode": 0,
[2025-11-20 23:14:25]     "pilotErrorDiag": "",
[2025-11-20 23:14:25]  *** Listing of results directory ***
[2025-11-20 23:14:25] total 1330036
[2025-11-20 23:14:25] -rw-r--r--. 1 boinc boinc    576529 Nov 18 16:47 pilot3.tar.gz
[2025-11-20 23:14:25] -rw-r--r--. 1 boinc boinc      5112 Nov 18 16:54 queuedata.json
[2025-11-20 23:14:25] -rwx------. 1 boinc boinc     36292 Nov 18 16:56 runpilot2-wrapper.sh
[2025-11-20 23:14:25] -rw-r--r--. 1 boinc boinc       100 Nov 19 21:46 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-20 23:14:25] -rwxr-xr-x. 1 boinc boinc      7986 Nov 19 21:46 run_atlas
[2025-11-20 23:14:25] -rw-r--r--. 1 boinc boinc       105 Nov 19 21:46 job.xml
[2025-11-20 23:14:25] -rw-r--r--. 2 boinc boinc 411129242 Nov 19 21:46 EVNT.47493065._000293.pool.root.1
[2025-11-20 23:14:25] -rw-r--r--. 1 boinc boinc      6391 Nov 19 21:46 init_data.xml
[2025-11-20 23:14:25] -rw-r--r--. 2 boinc boinc     15120 Nov 19 21:46 start_atlas.sh
[2025-11-20 23:14:25] drwxrwx--x. 2 boinc boinc        68 Nov 19 21:46 shared
[2025-11-20 23:14:25] -rw-r--r--. 2 boinc boinc    590099 Nov 19 21:46 input.tar.gz
[2025-11-20 23:14:25] -rw-r--r--. 1 boinc boinc         0 Nov 19 21:46 boinc_lockfile
[2025-11-20 23:14:25] -rw-r--r--. 1 boinc boinc      2773 Nov 19 21:46 pandaJob.out
[2025-11-20 23:14:25] -rw-------. 1 boinc boinc    989443 Nov 19 21:49 agis_schedconf.cvmfs.json
[2025-11-20 23:14:25] drwx------. 5 boinc boinc      4096 Nov 19 21:49 pilot3
[2025-11-20 23:14:25] -rw-r--r--. 1 boinc boinc       533 Nov 20 22:55 boinc_task_state.xml
[2025-11-20 23:14:25] -rw-------. 1 boinc boinc 917425346 Nov 20 23:13 HITS.47493068._002927.pool.root.1
[2025-11-20 23:14:25] -rw-------. 1 boinc boinc      1034 Nov 20 23:13 memory_monitor_summary.json
[2025-11-20 23:14:25] -rw-------. 1 boinc boinc   1526164 Nov 20 23:13 agis_ddmendpoints.agis.ALL.json
[2025-11-20 23:14:25] -rw-------. 1 boinc boinc   2572330 Nov 20 23:13 log.47493068._002927.job.log.tgz.1
[2025-11-20 23:14:25] -rw-r--r--. 1 boinc boinc      8192 Nov 20 23:14 boinc_mmap_file
[2025-11-20 23:14:25] -rw-r--r--. 1 boinc boinc        29 Nov 20 23:14 wrapper_checkpoint.txt
[2025-11-20 23:14:25] -rw-------. 1 boinc boinc        95 Nov 20 23:14 pilot_heartbeat.json
[2025-11-20 23:14:25] -rw-------. 1 boinc boinc      8627 Nov 20 23:14 heartbeat.json
[2025-11-20 23:14:25] -rw-------. 1 boinc boinc      4616 Nov 20 23:14 pilotlog.txt
[2025-11-20 23:14:25] -rw-------. 1 boinc boinc  12169910 Nov 20 23:14 log.47493068._002927.job.log.1
[2025-11-20 23:14:25] -rw-------. 1 boinc boinc       353 Nov 20 23:14 output.list
[2025-11-20 23:14:25] -rw-r--r--. 1 boinc boinc       620 Nov 20 23:14 runtime_log
[2025-11-20 23:14:25] -rw-------. 1 boinc boinc  14766080 Nov 20 23:14 result.tar.gz
[2025-11-20 23:14:25] -rw-------. 1 boinc boinc       662 Nov 20 23:14 twOMDmXFdf8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmJQFKDmp4h3am.diag
[2025-11-20 23:14:25] -rw-r--r--. 1 boinc boinc      8717 Nov 20 23:14 runtime_log.err
[2025-11-20 23:14:25] -rw-r--r--. 1 boinc boinc     20945 Nov 20 23:14 stderr.txt
[2025-11-20 23:14:25] HITS file was successfully produced:
[2025-11-20 23:14:25] -rw-------. 1 boinc boinc 917425346 Nov 20 23:13 shared/HITS.pool.root.1
[2025-11-20 23:14:25]  *** Contents of shared directory: ***
[2025-11-20 23:14:25] total 1312436
[2025-11-20 23:14:25] -rw-r--r--. 2 boinc boinc 411129242 Nov 19 21:46 ATLAS.root_0
[2025-11-20 23:14:25] -rw-r--r--. 2 boinc boinc     15120 Nov 19 21:46 start_atlas.sh
[2025-11-20 23:14:25] -rw-r--r--. 2 boinc boinc    590099 Nov 19 21:46 input.tar.gz
[2025-11-20 23:14:25] -rw-------. 1 boinc boinc 917425346 Nov 20 23:13 HITS.pool.root.1
[2025-11-20 23:14:25] -rw-------. 1 boinc boinc  14766080 Nov 20 23:14 result.tar.gz
23:14:27 (22958): run_atlas exited; CPU time 339007.721627
23:14:27 (22958): called boinc_finish(0)

</stderr_txt>
]]>

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