Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
21:58:21 (26968): wrapper (7.7.26015): starting
21:58:21 (26968): wrapper: running run_atlas (--nthreads 8)
[2025-11-19 21:58:21] Arguments: --nthreads 8
[2025-11-19 21:58:21] Threads: 8
[2025-11-19 21:58:21] Checking for CVMFS
[2025-11-19 21:58:22] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-19 21:58:22] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-19 21:58:22] Running cvmfs_config stat atlas.cern.ch
[2025-11-19 21:58:23] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-19 21:58:23] 2.11.2.0 14280 275638 140472 153056 3 236 22631482 25165825 4571 130560 2 147744909 99.891 78085079 3096 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-19 21:58:23] CVMFS is ok
[2025-11-19 21:58:23] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-19 21:58:23] Checking for apptainer binary...
[2025-11-19 21:58:23] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-19 21:58:23] Running /usr/bin/apptainer --version
[2025-11-19 21:58:24] apptainer version 1.3.2-1.el7
[2025-11-19 21:58:24] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-19 21:58:29] cg-vwn302.simple-grid.lan
[2025-11-19 21:58:29] apptainer works
[2025-11-19 21:58:29] Set ATHENA_PROC_NUMBER=8
[2025-11-19 21:58:29] Set ATHENA_CORE_NUMBER=8
[2025-11-19 21:58:29] Starting ATLAS job with PandaID=6891589549
[2025-11-19 21:58:29] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/8 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-20 23:27:12]  *** The last 200 lines of the pilot log: ***
[2025-11-20 23:27:12] 2025-11-20 22:26:22,506 | INFO     | fitting pss+swap vs Time
[2025-11-20 23:27:12] 2025-11-20 22:26:22,509 | INFO     | sum of square deviations: 1044442100187.4279
[2025-11-20 23:27:12] 2025-11-20 22:26:22,575 | INFO     | sum of deviations: 3617516194104.899
[2025-11-20 23:27:12] 2025-11-20 22:26:22,576 | INFO     | mean x: 1763631842.227485
[2025-11-20 23:27:12] 2025-11-20 22:26:22,576 | INFO     | mean y: 2872684.5897264844
[2025-11-20 23:27:12] 2025-11-20 22:26:22,576 | INFO     | intersect: -6105619828.831631
[2025-11-20 23:27:12] 2025-11-20 22:26:22,578 | INFO     | chi2: 9.487135381062831
[2025-11-20 23:27:12] 2025-11-20 22:26:22,581 | INFO     | sum of square deviations: 1034026121887.3683
[2025-11-20 23:27:12] 2025-11-20 22:26:22,639 | INFO     | sum of deviations: 4147339271725.263
[2025-11-20 23:27:12] 2025-11-20 22:26:22,640 | INFO     | mean x: 1763631689.7315931
[2025-11-20 23:27:12] 2025-11-20 22:26:22,640 | INFO     | mean y: 2880441.5093708164
[2025-11-20 23:27:12] 2025-11-20 22:26:22,640 | INFO     | intersect: -7070808329.846197
[2025-11-20 23:27:12] 2025-11-20 22:26:22,642 | INFO     | chi2: 5.9937703771081665
[2025-11-20 23:27:12] 2025-11-20 22:26:22,642 | INFO     | current chi2=5.9937703771081665 (change=36.822126634007276 %)
[2025-11-20 23:27:12] 2025-11-20 22:26:22,644 | INFO     | sum of square deviations: 1023679633262.2594
[2025-11-20 23:27:12] 2025-11-20 22:26:22,714 | INFO     | sum of deviations: 4583276856711.388
[2025-11-20 23:27:12] 2025-11-20 22:26:22,714 | INFO     | mean x: 1763631537.2357287
[2025-11-20 23:27:12] 2025-11-20 22:26:22,714 | INFO     | mean y: 2886862.5829415717
[2025-11-20 23:27:12] 2025-11-20 22:26:22,714 | INFO     | intersect: -7893344874.117032
[2025-11-20 23:27:12] 2025-11-20 22:26:22,716 | INFO     | chi2: 3.27615337177036
[2025-11-20 23:27:12] 2025-11-20 22:26:22,716 | INFO     | current chi2=3.27615337177036 (change=45.34069265844955 %)
[2025-11-20 23:27:12] 2025-11-20 22:26:22,719 | INFO     | sum of square deviations: 1013402220460.5494
[2025-11-20 23:27:12] 2025-11-20 22:26:22,778 | INFO     | sum of deviations: 4682527611185.205
[2025-11-20 23:27:12] 2025-11-20 22:26:22,779 | INFO     | mean x: 1763631384.7385445
[2025-11-20 23:27:12] 2025-11-20 22:26:22,779 | INFO     | mean y: 2888334.2917789756
[2025-11-20 23:27:12] 2025-11-20 22:26:22,779 | INFO     | intersect: -8146149124.140074
[2025-11-20 23:27:12] 2025-11-20 22:26:22,781 | INFO     | chi2: 3.0446908890322275
[2025-11-20 23:27:12] 2025-11-20 22:26:22,781 | INFO     | current chi2=3.0446908890322275 (change=7.0650685872211 %)
[2025-11-20 23:27:12] 2025-11-20 22:26:22,781 | INFO     | right removable region: 1483
[2025-11-20 23:27:12] 2025-11-20 22:26:22,783 | INFO     | sum of square deviations: 1034024999487.3672
[2025-11-20 23:27:12] 2025-11-20 22:26:22,808 | INFO     | time since job start (91497s) is within the limit (172800.0s)
[2025-11-20 23:27:12] 2025-11-20 22:26:22,847 | INFO     | sum of deviations: 3155201400496.1113
[2025-11-20 23:27:12] 2025-11-20 22:26:22,847 | INFO     | mean x: 1763631994.7315931
[2025-11-20 23:27:12] 2025-11-20 22:26:22,847 | INFO     | mean y: 2879449.6311914325
[2025-11-20 23:27:12] 2025-11-20 22:26:22,847 | INFO     | intersect: -5378628872.213649
[2025-11-20 23:27:12] 2025-11-20 22:26:22,849 | INFO     | chi2: 6.983507766802832
[2025-11-20 23:27:12] 2025-11-20 22:26:22,849 | INFO     | current chi2=6.983507766802832 (change=26.38971105290079 %)
[2025-11-20 23:27:12] 2025-11-20 22:26:22,851 | INFO     | sum of square deviations: 1023678299806.9064
[2025-11-20 23:27:12] 2025-11-20 22:26:22,910 | INFO     | sum of deviations: 3047323780308.4595
[2025-11-20 23:27:12] 2025-11-20 22:26:22,911 | INFO     | mean x: 1763632147.2290127
[2025-11-20 23:27:12] 2025-11-20 22:26:22,911 | INFO     | mean y: 2881039.438549362
[2025-11-20 23:27:12] 2025-11-20 22:26:22,911 | INFO     | intersect: -5247164978.906463
[2025-11-20 23:27:12] 2025-11-20 22:26:22,913 | INFO     | chi2: 6.9179488500692
[2025-11-20 23:27:12] 2025-11-20 22:26:22,913 | INFO     | current chi2=6.9179488500692 (change=0.9387677213631327 %)
[2025-11-20 23:27:12] 2025-11-20 22:26:22,913 | INFO     | left removable region: 20
[2025-11-20 23:27:12] 2025-11-20 22:26:22,915 | INFO     | sum of square deviations: 970986206985.8254
[2025-11-20 23:27:12] 2025-11-20 22:26:22,972 | INFO     | sum of deviations: 3906274878987.762
[2025-11-20 23:27:12] 2025-11-20 22:26:22,972 | INFO     | mean x: 1763631964.241285
[2025-11-20 23:27:12] 2025-11-20 22:26:22,973 | INFO     | mean y: 2899755.2556390977
[2025-11-20 23:27:12] 2025-11-20 22:26:22,973 | INFO     | intersect: -7092186856.820351
[2025-11-20 23:27:12] 2025-11-20 22:26:22,974 | INFO     | chi2: 0.3575748241915078
[2025-11-20 23:27:12] 2025-11-20 22:26:22,975 | INFO     | current memory leak: 4.02 B/s (using 1463 data points, chi2=0.36)
[2025-11-20 23:27:12] 2025-11-20 22:26:22,977 | INFO     | could have reported an average CPU frequency of 1999 MHz (50 samples)
[2025-11-20 23:27:12] 2025-11-20 22:26:22,977 | INFO     | ..............................
[2025-11-20 23:27:12] 2025-11-20 22:26:22,977 | INFO     | . Timing measurements:
[2025-11-20 23:27:12] 2025-11-20 22:26:22,977 | INFO     | . get job = 0 s
[2025-11-20 23:27:12] 2025-11-20 22:26:22,977 | INFO     | . initial setup = 2 s
[2025-11-20 23:27:12] 2025-11-20 22:26:22,977 | INFO     | . payload setup = 12 s
[2025-11-20 23:27:12] 2025-11-20 22:26:22,977 | INFO     | . stage-in = 0 s
[2025-11-20 23:27:12] 2025-11-20 22:26:22,977 | INFO     | . payload execution = 91428 s
[2025-11-20 23:27:12] 2025-11-20 22:26:22,977 | INFO     | . stage-out = 4 s
[2025-11-20 23:27:12] 2025-11-20 22:26:22,978 | INFO     | . log creation = 1 s
[2025-11-20 23:27:12] 2025-11-20 22:26:22,978 | INFO     | ..............................
[2025-11-20 23:27:12] 2025-11-20 22:26:23,099 | INFO     | 
[2025-11-20 23:27:12] 2025-11-20 22:26:23,099 | INFO     | job summary report
[2025-11-20 23:27:12] 2025-11-20 22:26:23,099 | INFO     | --------------------------------------------------
[2025-11-20 23:27:12] 2025-11-20 22:26:23,100 | INFO     | PanDA job id: 6891589549
[2025-11-20 23:27:12] 2025-11-20 22:26:23,100 | INFO     | task id: 47493068
[2025-11-20 23:27:12] 2025-11-20 22:26:23,100 | INFO     | errors: (none)
[2025-11-20 23:27:12] 2025-11-20 22:26:23,100 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-20 23:27:12] 2025-11-20 22:26:23,100 | INFO     | pilot state: finished 
[2025-11-20 23:27:12] 2025-11-20 22:26:23,100 | INFO     | transexitcode: 0
[2025-11-20 23:27:12] 2025-11-20 22:26:23,100 | INFO     | exeerrorcode: 0
[2025-11-20 23:27:12] 2025-11-20 22:26:23,100 | INFO     | exeerrordiag: 
[2025-11-20 23:27:12] 2025-11-20 22:26:23,100 | INFO     | exitcode: 0
[2025-11-20 23:27:12] 2025-11-20 22:26:23,100 | INFO     | exitmsg: OK
[2025-11-20 23:27:12] 2025-11-20 22:26:23,100 | INFO     | cpuconsumptiontime: 341956 s
[2025-11-20 23:27:12] 2025-11-20 22:26:23,100 | INFO     | nevents: 1000
[2025-11-20 23:27:12] 2025-11-20 22:26:23,101 | INFO     | neventsw: 0
[2025-11-20 23:27:12] 2025-11-20 22:26:23,101 | INFO     | pid: 4918
[2025-11-20 23:27:12] 2025-11-20 22:26:23,101 | INFO     | pgrp: 4918
[2025-11-20 23:27:12] 2025-11-20 22:26:23,101 | INFO     | corecount: 8
[2025-11-20 23:27:12] 2025-11-20 22:26:23,101 | INFO     | event service: False
[2025-11-20 23:27:12] 2025-11-20 22:26:23,101 | INFO     | sizes: {0: 2296371, 1: 2297227, 2: 2297227, 12: 2297255, 13: 2297545, 23: 2297601, 91445: 2361829, 91450: 2372419, 91452: 2372475, 91466: 2372721}
[2025-11-20 23:27:12] 2025-11-20 22:26:23,101 | INFO     | --------------------------------------------------
[2025-11-20 23:27:12] 2025-11-20 22:26:23,101 | INFO     | 
[2025-11-20 23:27:12] 2025-11-20 22:26:23,101 | INFO     | executing command: ls -lF /var/lib/boinc/slots/8
[2025-11-20 23:27:12] 2025-11-20 22:26:23,127 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-20 23:27:12] 2025-11-20 22:26:23,127 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-20 23:27:12] 2025-11-20 22:26:23,127 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-20 23:27:12] 2025-11-20 22:26:23,127 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-20 23:27:12] 2025-11-20 22:26:23,127 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-20 23:27:12] 2025-11-20 22:26:23,128 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-20 23:27:12] 2025-11-20 22:26:23,128 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-20 23:27:12] 2025-11-20 22:26:23,128 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-20 23:27:12] 2025-11-20 22:26:23,128 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-20 23:27:12] 2025-11-20 22:26:23,128 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-20 23:27:12] 2025-11-20 22:26:23,128 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-20 23:27:12] 2025-11-20 22:26:23,128 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-20 23:27:12] 2025-11-20 22:26:23,128 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-20 23:27:12] 2025-11-20 22:26:23,128 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-20 23:27:12] 2025-11-20 22:26:23,128 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-20 23:27:12] 2025-11-20 22:26:23,129 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-20 23:27:12] 2025-11-20 22:26:23,129 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-20 23:27:12] 2025-11-20 22:26:23,129 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-20 23:27:12] 2025-11-20 22:26:23,129 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-20 23:27:12] 2025-11-20 22:26:23,129 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-20 23:27:12] 2025-11-20 22:26:23,129 | INFO     | job 6891589549 has completed (purged errors)
[2025-11-20 23:27:12] 2025-11-20 22:26:23,129 | INFO     | overall cleanup function is called
[2025-11-20 23:27:12] 2025-11-20 22:26:24,154 | INFO     | --- collectZombieJob: --- 10, [4918]
[2025-11-20 23:27:12] 2025-11-20 22:26:24,154 | INFO     | zombie collector waiting for pid 4918
[2025-11-20 23:27:12] 2025-11-20 22:26:24,154 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-20 23:27:12] 2025-11-20 22:26:24,154 | INFO     | collected zombie processes
[2025-11-20 23:27:12] 2025-11-20 22:26:24,154 | INFO     | will attempt to kill all subprocesses of pid=4918
[2025-11-20 23:27:12] 2025-11-20 22:26:24,270 | INFO     | process IDs to be killed: [4918] (in reverse order)
[2025-11-20 23:27:12] 2025-11-20 22:26:24,347 | WARNING  | found no corresponding commands to process id(s)
[2025-11-20 23:27:12] 2025-11-20 22:26:24,348 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-20 23:27:12] 2025-11-20 22:26:24,352 | INFO     | did not find any defunct processes belonging to 4918
[2025-11-20 23:27:12] 2025-11-20 22:26:24,356 | INFO     | did not find any defunct processes belonging to 4918
[2025-11-20 23:27:12] 2025-11-20 22:26:24,359 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-20 23:27:12] 2025-11-20 22:26:24,359 | INFO     | ready for new job
[2025-11-20 23:27:12] 2025-11-20 22:26:24,359 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-20 23:27:12] 2025-11-20 22:26:24,366 | INFO     | ***************************************
[2025-11-20 23:27:12] 2025-11-20 22:26:24,366 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-20 23:27:12] 2025-11-20 22:26:24,367 | INFO     | ***************************************
[2025-11-20 23:27:12] 2025-11-20 22:26:24,367 | INFO     | 
[2025-11-20 23:27:12] 2025-11-20 22:26:24,367 | INFO     | pilot is running in a VM
[2025-11-20 23:27:12] 2025-11-20 22:26:24,368 | INFO     | architecture information:
[2025-11-20 23:27:12] 2025-11-20 22:26:24,368 | INFO     | executing command: cat /etc/os-release
[2025-11-20 23:27:12] 2025-11-20 22:26:24,414 | INFO     | cat /etc/os-release:
[2025-11-20 23:27:12] NAME="CentOS Linux"
[2025-11-20 23:27:12] VERSION="7 (Core)"
[2025-11-20 23:27:12] ID="centos"
[2025-11-20 23:27:12] ID_LIKE="rhel fedora"
[2025-11-20 23:27:12] VERSION_ID="7"
[2025-11-20 23:27:12] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-20 23:27:12] ANSI_COLOR="0;31"
[2025-11-20 23:27:12] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-20 23:27:12] HOME_URL="https://www.centos.org/"
[2025-11-20 23:27:12] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-20 23:27:12] 
[2025-11-20 23:27:12] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-20 23:27:12] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-20 23:27:12] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-20 23:27:12] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-20 23:27:12] 
[2025-11-20 23:27:12] 2025-11-20 22:26:24,415 | INFO     | ***************************************
[2025-11-20 23:27:12] 2025-11-20 22:26:24,919 | INFO     | executing command: df -mP /var/lib/boinc/slots/8
[2025-11-20 23:27:12] 2025-11-20 22:26:24,969 | INFO     | sufficient remaining disk space (494246297600 B)
[2025-11-20 23:27:12] 2025-11-20 22:26:24,969 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-20 23:27:12] 2025-11-20 22:26:24,970 | INFO     | current server update state: UPDATING_FINAL
[2025-11-20 23:27:12] 2025-11-20 22:26:24,970 | INFO     | update_server=False
[2025-11-20 23:27:12] 2025-11-20 22:26:24,970 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-20 23:27:12] 2025-11-20 22:26:24,970 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-20 23:27:12] 2025-11-20 22:26:24,971 | INFO     | aborting loop
[2025-11-20 23:27:12] 2025-11-20 22:26:24,971 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-20 23:27:12] 2025-11-20 22:26:25,073 | INFO     | all data control threads have been joined
[2025-11-20 23:27:12] 2025-11-20 22:26:25,382 | INFO     | all job control threads have been joined
[2025-11-20 23:27:12] 2025-11-20 22:26:25,546 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-20 23:27:12] 2025-11-20 22:26:25,579 | INFO     | all payload control threads have been joined
[2025-11-20 23:27:12] 2025-11-20 22:26:25,975 | INFO     | [job] retrieve thread has finished
[2025-11-20 23:27:12] 2025-11-20 22:26:25,975 | INFO     | [job] job monitor thread has finished
[2025-11-20 23:27:12] 2025-11-20 22:26:25,976 | INFO     | [job] queue monitor thread has finished
[2025-11-20 23:27:12] 2025-11-20 22:26:26,080 | INFO     | [data] control thread has finished
[2025-11-20 23:27:12] 2025-11-20 22:26:26,262 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-20 23:27:12] 2025-11-20 22:26:26,376 | INFO     | [payload] failed_post thread has finished
[2025-11-20 23:27:12] 2025-11-20 22:26:26,386 | INFO     | [job] control thread has finished
[2025-11-20 23:27:12] 2025-11-20 22:26:26,527 | INFO     | [payload] validate_pre thread has finished
[2025-11-20 23:27:12] 2025-11-20 22:26:26,585 | INFO     | [payload] control thread has finished
[2025-11-20 23:27:12] 2025-11-20 22:26:26,937 | INFO     | [job] validate thread has finished
[2025-11-20 23:27:12] 2025-11-20 22:26:26,951 | INFO     | [data] copytool_in thread has finished
[2025-11-20 23:27:12] 2025-11-20 22:26:27,003 | INFO     | [payload] execute_payloads thread has finished
[2025-11-20 23:27:12] 2025-11-20 22:26:27,031 | INFO     | [payload] validate_post thread has finished
[2025-11-20 23:27:12] 2025-11-20 22:26:27,102 | INFO     | [job] create_data_payload thread has finished
[2025-11-20 23:27:12] 2025-11-20 22:26:27,551 | INFO     | [data] copytool_out thread has finished
[2025-11-20 23:27:12] 2025-11-20 22:26:28,281 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-20 23:27:12] 2025-11-20 22:26:32,287 | INFO     | [data] queue_monitor thread has finished
[2025-11-20 23:27:12] 2025-11-20 22:26:56,050 | INFO     | PID=30812 has CPU usage=2.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-20 23:27:12] 2025-11-20 22:26:56,050 | INFO     | .. there are 9 such processes running
[2025-11-20 23:27:12] 2025-11-20 22:26:56,050 | INFO     | found 0 job(s) in 20 queues
[2025-11-20 23:27:12] 2025-11-20 22:26:56,050 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-20 23:27:12] 2025-11-20 22:26:56,050 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-20 23:27:12] 2025-11-20 22:27:04,526 | INFO     | [monitor] cgroup control has ended
[2025-11-20 23:27:12] 2025-11-20 22:27:06,370 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139752721262400)>', '<ExcThread(monitor, started 139752422483712)>']
[2025-11-20 23:27:12] 2025-11-20 22:27:07,105 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-20 23:27:12] 2025-11-20 22:27:07,106 | INFO     | [monitor] control thread has ended
[2025-11-20 23:27:12] 2025-11-20 22:27:11,394 | INFO     | all workflow threads have been joined
[2025-11-20 23:27:12] 2025-11-20 22:27:11,395 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-20 23:27:12] 2025-11-20 22:27:11,395 | INFO     | traces error code: 0
[2025-11-20 23:27:12] 2025-11-20 22:27:11,395 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-20 23:27:12] 2025-11-20 22:27:11,663 [wrapper] ==== pilot stdout END ====
[2025-11-20 23:27:12] 2025-11-20 22:27:11,671 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-20 23:27:12] 2025-11-20 22:27:11,675 [wrapper] pilotpid: 30812
[2025-11-20 23:27:12] 2025-11-20 22:27:11,678 [wrapper] Pilot exit status: 0
[2025-11-20 23:27:12] 2025-11-20 22:27:11,699 [wrapper] pandaids: 6891589549
[2025-11-20 23:27:12] 2025-11-20 22:27:11,742 [wrapper] cleanup supervisor_pilot  8349 30813
[2025-11-20 23:27:12] 2025-11-20 22:27:11,763 [wrapper] Test setup, not cleaning
[2025-11-20 23:27:12] 2025-11-20 22:27:11,798 [wrapper] apfmon messages muted
[2025-11-20 23:27:12] 2025-11-20 22:27:11,805 [wrapper] ==== wrapper stdout END ====
[2025-11-20 23:27:12] 2025-11-20 22:27:11,816 [wrapper] ==== wrapper stderr END ====
[2025-11-20 23:27:12]  *** Error codes and diagnostics ***
[2025-11-20 23:27:12]     "exeErrorCode": 0,
[2025-11-20 23:27:12]     "exeErrorDiag": "",
[2025-11-20 23:27:12]     "pilotErrorCode": 0,
[2025-11-20 23:27:12]     "pilotErrorDiag": "",
[2025-11-20 23:27:12]  *** Listing of results directory ***
[2025-11-20 23:27:12] total 1317080
[2025-11-20 23:27:12] -rw-r--r--. 1 boinc boinc    576529 Nov 18 18:46 pilot3.tar.gz
[2025-11-20 23:27:12] -rw-r--r--. 1 boinc boinc      5112 Nov 18 18:50 queuedata.json
[2025-11-20 23:27:12] -rwx------. 1 boinc boinc     36292 Nov 18 18:51 runpilot2-wrapper.sh
[2025-11-20 23:27:12] -rw-r--r--. 1 boinc boinc       100 Nov 19 21:58 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-20 23:27:12] -rwxr-xr-x. 1 boinc boinc      7986 Nov 19 21:58 run_atlas
[2025-11-20 23:27:12] -rw-r--r--. 1 boinc boinc       105 Nov 19 21:58 job.xml
[2025-11-20 23:27:12] -rw-r--r--. 1 boinc boinc      6389 Nov 19 21:58 init_data.xml
[2025-11-20 23:27:12] -rw-r--r--. 2 boinc boinc 407223835 Nov 19 21:58 EVNT.47493065._000538.pool.root.1
[2025-11-20 23:27:12] -rw-r--r--. 2 boinc boinc     15120 Nov 19 21:58 start_atlas.sh
[2025-11-20 23:27:12] drwxrwx--x. 2 boinc boinc        68 Nov 19 21:58 shared
[2025-11-20 23:27:12] -rw-r--r--. 2 boinc boinc    590097 Nov 19 21:58 input.tar.gz
[2025-11-20 23:27:12] -rw-r--r--. 1 boinc boinc         0 Nov 19 21:58 boinc_lockfile
[2025-11-20 23:27:12] -rw-r--r--. 1 boinc boinc      2772 Nov 19 21:58 pandaJob.out
[2025-11-20 23:27:12] -rw-------. 1 boinc boinc    989443 Nov 19 22:01 agis_schedconf.cvmfs.json
[2025-11-20 23:27:12] drwx------. 5 boinc boinc      4096 Nov 19 22:01 pilot3
[2025-11-20 23:27:12] -rw-r--r--. 1 boinc boinc       533 Nov 20 23:10 boinc_task_state.xml
[2025-11-20 23:27:12] -rw-------. 1 boinc boinc 908208766 Nov 20 23:25 HITS.47493068._005380.pool.root.1
[2025-11-20 23:27:12] -rw-------. 1 boinc boinc        95 Nov 20 23:25 pilot_heartbeat.json
[2025-11-20 23:27:12] -rw-------. 1 boinc boinc      1033 Nov 20 23:25 memory_monitor_summary.json
[2025-11-20 23:27:12] -rw-------. 1 boinc boinc   1526164 Nov 20 23:26 agis_ddmendpoints.agis.ALL.json
[2025-11-20 23:27:12] -rw-------. 1 boinc boinc   2549916 Nov 20 23:26 log.47493068._005380.job.log.tgz.1
[2025-11-20 23:27:12] -rw-------. 1 boinc boinc      8623 Nov 20 23:26 heartbeat.json
[2025-11-20 23:27:12] -rw-r--r--. 1 boinc boinc      8192 Nov 20 23:27 boinc_mmap_file
[2025-11-20 23:27:12] -rw-r--r--. 1 boinc boinc        29 Nov 20 23:27 wrapper_checkpoint.txt
[2025-11-20 23:27:12] -rw-------. 1 boinc boinc      4884 Nov 20 23:27 pilotlog.txt
[2025-11-20 23:27:12] -rw-------. 1 boinc boinc  12128033 Nov 20 23:27 log.47493068._005380.job.log.1
[2025-11-20 23:27:12] -rw-------. 1 boinc boinc       353 Nov 20 23:27 output.list
[2025-11-20 23:27:12] -rw-r--r--. 1 boinc boinc       620 Nov 20 23:27 runtime_log
[2025-11-20 23:27:12] -rw-------. 1 boinc boinc  14694400 Nov 20 23:27 result.tar.gz
[2025-11-20 23:27:12] -rw-r--r--. 1 boinc boinc      8703 Nov 20 23:27 runtime_log.err
[2025-11-20 23:27:12] -rw-------. 1 boinc boinc       662 Nov 20 23:27 ofCLDmQ2ef8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmV8FKDmn8gjdm.diag
[2025-11-20 23:27:12] -rw-r--r--. 1 boinc boinc     20819 Nov 20 23:27 stderr.txt
[2025-11-20 23:27:12] HITS file was successfully produced:
[2025-11-20 23:27:12] -rw-------. 1 boinc boinc 908208766 Nov 20 23:25 shared/HITS.pool.root.1
[2025-11-20 23:27:12]  *** Contents of shared directory: ***
[2025-11-20 23:27:12] total 1299552
[2025-11-20 23:27:12] -rw-r--r--. 2 boinc boinc 407223835 Nov 19 21:58 ATLAS.root_0
[2025-11-20 23:27:12] -rw-r--r--. 2 boinc boinc     15120 Nov 19 21:58 start_atlas.sh
[2025-11-20 23:27:12] -rw-r--r--. 2 boinc boinc    590097 Nov 19 21:58 input.tar.gz
[2025-11-20 23:27:12] -rw-------. 1 boinc boinc 908208766 Nov 20 23:25 HITS.pool.root.1
[2025-11-20 23:27:12] -rw-------. 1 boinc boinc  14694400 Nov 20 23:27 result.tar.gz
23:27:13 (26968): run_atlas exited; CPU time 342529.735137
23:27:13 (26968): called boinc_finish(0)

</stderr_txt>
]]>

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