Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
13:08:50 (24107): wrapper (7.7.26015): starting
13:08:50 (24107): wrapper: running run_atlas (--nthreads 8)
[2025-11-21 13:08:50] Arguments: --nthreads 8
[2025-11-21 13:08:50] Threads: 8
[2025-11-21 13:08:50] Checking for CVMFS
[2025-11-21 13:08:51] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-21 13:08:52] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-21 13:08:52] Running cvmfs_config stat atlas.cern.ch
[2025-11-21 13:08:53] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-21 13:08:53] 2.11.2.0 6805 277985 144148 153124 1 85 22437766 25165824 4632 130560 30 118949245 99.859 77212599 3130 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-21 13:08:53] CVMFS is ok
[2025-11-21 13:08:53] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-21 13:08:53] Checking for apptainer binary...
[2025-11-21 13:08:53] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-21 13:08:53] Running /usr/bin/apptainer --version
[2025-11-21 13:08:53] apptainer version 1.3.2-1.el7
[2025-11-21 13:08:53] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-21 13:09:10] cg-vwn251.simple-grid.lan
[2025-11-21 13:09:10] apptainer works
[2025-11-21 13:09:10] Set ATHENA_PROC_NUMBER=8
[2025-11-21 13:09:10] Set ATHENA_CORE_NUMBER=8
[2025-11-21 13:09:10] Starting ATLAS job with PandaID=6891570973
[2025-11-21 13:09:10] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/6 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-22 14:36:45]  *** The last 200 lines of the pilot log: ***
[2025-11-22 14:36:45] 2025-11-22 13:35:31,726 | INFO     | time since job start (91355s) is within the limit (172800.0s)
[2025-11-22 14:36:45] 2025-11-22 13:35:33,444 | INFO     | monitor loop #6132: job 0:6891570973 is in state 'finished'
[2025-11-22 14:36:45] 2025-11-22 13:35:33,445 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-22 14:36:45] 2025-11-22 13:35:33,733 | INFO     | time since job start (91357s) is within the limit (172800.0s)
[2025-11-22 14:36:45] 2025-11-22 13:35:35,742 | INFO     | time since job start (91359s) is within the limit (172800.0s)
[2025-11-22 14:36:45] 2025-11-22 13:35:35,949 | INFO     | monitor loop #6133: job 0:6891570973 is in state 'finished'
[2025-11-22 14:36:45] 2025-11-22 13:35:35,950 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-22 14:36:45] 2025-11-22 13:35:37,751 | INFO     | time since job start (91361s) is within the limit (172800.0s)
[2025-11-22 14:36:45] 2025-11-22 13:35:38,454 | INFO     | monitor loop #6134: job 0:6891570973 is in state 'finished'
[2025-11-22 14:36:45] 2025-11-22 13:35:38,455 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-22 14:36:45] 2025-11-22 13:35:39,758 | INFO     | time since job start (91363s) is within the limit (172800.0s)
[2025-11-22 14:36:45] 2025-11-22 13:35:40,939 | INFO     | PID=27883 has CPU usage=1.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-22 14:36:45] 2025-11-22 13:35:40,939 | INFO     | .. there are 9 such processes running
[2025-11-22 14:36:45] 2025-11-22 13:35:40,971 | INFO     | monitor loop #6135: job 0:6891570973 is in state 'finished'
[2025-11-22 14:36:45] 2025-11-22 13:35:40,972 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-22 14:36:45] 2025-11-22 13:35:41,939 | INFO     | time since job start (91365s) is within the limit (172800.0s)
[2025-11-22 14:36:45] 2025-11-22 13:35:42,186 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-22 14:36:45] 2025-11-22 13:35:42,187 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-11-22 14:36:45] 2025-11-22 13:35:42,189 | INFO     | using path: /var/lib/boinc/slots/6/PanDA_Pilot-6891570973/memory_monitor_summary.json (trf name=prmon)
[2025-11-22 14:36:45] 2025-11-22 13:35:42,189 | INFO     | extracted standard info from prmon json
[2025-11-22 14:36:45] 2025-11-22 13:35:42,190 | INFO     | extracted standard memory fields from prmon json
[2025-11-22 14:36:45] 2025-11-22 13:35:42,190 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-22 14:36:45] 2025-11-22 13:35:42,232 | INFO     | fitting pss+swap vs Time
[2025-11-22 14:36:45] 2025-11-22 13:35:42,235 | INFO     | sum of square deviations: 1021614005116.5581
[2025-11-22 14:36:45] 2025-11-22 13:35:42,301 | INFO     | sum of deviations: 3816977164078.109
[2025-11-22 14:36:45] 2025-11-22 13:35:42,301 | INFO     | mean x: 1763773027.810484
[2025-11-22 14:36:45] 2025-11-22 13:35:42,302 | INFO     | mean y: 2844642.3904569894
[2025-11-22 14:36:45] 2025-11-22 13:35:42,302 | INFO     | intersect: -6587003711.344102
[2025-11-22 14:36:45] 2025-11-22 13:35:42,303 | INFO     | chi2: 23.346912102161234
[2025-11-22 14:36:45] 2025-11-22 13:35:42,306 | INFO     | sum of square deviations: 1011350630667.9406
[2025-11-22 14:36:45] 2025-11-22 13:35:42,368 | INFO     | sum of deviations: 4301754186077.2617
[2025-11-22 14:36:45] 2025-11-22 13:35:42,369 | INFO     | mean x: 1763772875.3149023
[2025-11-22 14:36:45] 2025-11-22 13:35:42,369 | INFO     | mean y: 2851844.3142279163
[2025-11-22 14:36:45] 2025-11-22 13:35:42,369 | INFO     | intersect: -7499311223.171487
[2025-11-22 14:36:45] 2025-11-22 13:35:42,371 | INFO     | chi2: 20.254865356381618
[2025-11-22 14:36:45] 2025-11-22 13:35:42,371 | INFO     | current chi2=20.254865356381618 (change=13.243921646894725 %)
[2025-11-22 14:36:45] 2025-11-22 13:35:42,371 | INFO     | right removable region: 1482
[2025-11-22 14:36:45] 2025-11-22 13:35:42,373 | INFO     | sum of square deviations: 1011349441167.942
[2025-11-22 14:36:45] 2025-11-22 13:35:42,446 | INFO     | sum of deviations: 3190475582572.9775
[2025-11-22 14:36:45] 2025-11-22 13:35:42,446 | INFO     | mean x: 1763773180.3149023
[2025-11-22 14:36:45] 2025-11-22 13:35:42,446 | INFO     | mean y: 2853950.0236008093
[2025-11-22 14:36:45] 2025-11-22 13:35:42,446 | INFO     | intersect: -5561271599.394023
[2025-11-22 14:36:45] 2025-11-22 13:35:42,448 | INFO     | chi2: 18.58627969717835
[2025-11-22 14:36:45] 2025-11-22 13:35:42,448 | INFO     | current chi2=18.58627969717835 (change=20.390843911825872 %)
[2025-11-22 14:36:45] 2025-11-22 13:35:42,449 | INFO     | left removable region: 10
[2025-11-22 14:36:45] 2025-11-22 13:35:42,451 | INFO     | sum of square deviations: 989011303124.7803
[2025-11-22 14:36:45] 2025-11-22 13:35:42,528 | INFO     | sum of deviations: 3251989570021.0327
[2025-11-22 14:36:45] 2025-11-22 13:35:42,528 | INFO     | mean x: 1763773149.8247283
[2025-11-22 14:36:45] 2025-11-22 13:35:42,528 | INFO     | mean y: 2871254.9497282607
[2025-11-22 14:36:45] 2025-11-22 13:35:42,528 | INFO     | intersect: -5796629588.96479
[2025-11-22 14:36:45] 2025-11-22 13:35:42,530 | INFO     | chi2: 11.023210240091528
[2025-11-22 14:36:45] 2025-11-22 13:35:42,530 | INFO     | current memory leak: 3.29 B/s (using 1472 data points, chi2=11.02)
[2025-11-22 14:36:45] 2025-11-22 13:35:42,533 | INFO     | could have reported an average CPU frequency of 1999 MHz (50 samples)
[2025-11-22 14:36:45] 2025-11-22 13:35:42,533 | INFO     | ..............................
[2025-11-22 14:36:45] 2025-11-22 13:35:42,533 | INFO     | . Timing measurements:
[2025-11-22 14:36:45] 2025-11-22 13:35:42,534 | INFO     | . get job = 0 s
[2025-11-22 14:36:45] 2025-11-22 13:35:42,534 | INFO     | . initial setup = 6 s
[2025-11-22 14:36:45] 2025-11-22 13:35:42,534 | INFO     | . payload setup = 151 s
[2025-11-22 14:36:45] 2025-11-22 13:35:42,534 | INFO     | . stage-in = 0 s
[2025-11-22 14:36:45] 2025-11-22 13:35:42,534 | INFO     | . payload execution = 90917 s
[2025-11-22 14:36:45] 2025-11-22 13:35:42,534 | INFO     | . stage-out = 5 s
[2025-11-22 14:36:45] 2025-11-22 13:35:42,534 | INFO     | . log creation = 2 s
[2025-11-22 14:36:45] 2025-11-22 13:35:42,534 | INFO     | ..............................
[2025-11-22 14:36:45] 2025-11-22 13:35:42,679 | INFO     | 
[2025-11-22 14:36:45] 2025-11-22 13:35:42,680 | INFO     | job summary report
[2025-11-22 14:36:45] 2025-11-22 13:35:42,680 | INFO     | --------------------------------------------------
[2025-11-22 14:36:45] 2025-11-22 13:35:42,680 | INFO     | PanDA job id: 6891570973
[2025-11-22 14:36:45] 2025-11-22 13:35:42,680 | INFO     | task id: 47493068
[2025-11-22 14:36:45] 2025-11-22 13:35:42,680 | INFO     | errors: (none)
[2025-11-22 14:36:45] 2025-11-22 13:35:42,680 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-22 14:36:45] 2025-11-22 13:35:42,680 | INFO     | pilot state: finished 
[2025-11-22 14:36:45] 2025-11-22 13:35:42,680 | INFO     | transexitcode: 0
[2025-11-22 14:36:45] 2025-11-22 13:35:42,680 | INFO     | exeerrorcode: 0
[2025-11-22 14:36:45] 2025-11-22 13:35:42,681 | INFO     | exeerrordiag: 
[2025-11-22 14:36:45] 2025-11-22 13:35:42,681 | INFO     | exitcode: 0
[2025-11-22 14:36:45] 2025-11-22 13:35:42,681 | INFO     | exitmsg: OK
[2025-11-22 14:36:45] 2025-11-22 13:35:42,681 | INFO     | cpuconsumptiontime: 336883 s
[2025-11-22 14:36:45] 2025-11-22 13:35:42,681 | INFO     | nevents: 1000
[2025-11-22 14:36:45] 2025-11-22 13:35:42,681 | INFO     | neventsw: 0
[2025-11-22 14:36:45] 2025-11-22 13:35:42,681 | INFO     | pid: 2027
[2025-11-22 14:36:45] 2025-11-22 13:35:42,681 | INFO     | pgrp: 2027
[2025-11-22 14:36:45] 2025-11-22 13:35:42,681 | INFO     | corecount: 8
[2025-11-22 14:36:45] 2025-11-22 13:35:42,681 | INFO     | event service: False
[2025-11-22 14:36:45] 2025-11-22 13:35:42,681 | INFO     | sizes: {0: 2298569, 1: 2298824, 2: 2298824, 12: 2298852, 23: 2298880, 34: 2298908, 44: 2299064, 55: 2299092, 66: 2299120, 77: 2299148, 87: 2299204, 93: 2299774, 98
[2025-11-22 14:36:45] 2025-11-22 13:35:42,681 | INFO     | --------------------------------------------------
[2025-11-22 14:36:45] 2025-11-22 13:35:42,682 | INFO     | 
[2025-11-22 14:36:45] 2025-11-22 13:35:42,682 | INFO     | executing command: ls -lF /var/lib/boinc/slots/6
[2025-11-22 14:36:45] 2025-11-22 13:35:43,067 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-22 14:36:45] 2025-11-22 13:35:43,067 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-22 14:36:45] 2025-11-22 13:35:43,067 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-22 14:36:45] 2025-11-22 13:35:43,068 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-22 14:36:45] 2025-11-22 13:35:43,068 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-22 14:36:45] 2025-11-22 13:35:43,068 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-22 14:36:45] 2025-11-22 13:35:43,068 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-22 14:36:45] 2025-11-22 13:35:43,068 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-22 14:36:45] 2025-11-22 13:35:43,068 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-22 14:36:45] 2025-11-22 13:35:43,068 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-22 14:36:45] 2025-11-22 13:35:43,068 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-22 14:36:45] 2025-11-22 13:35:43,068 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-22 14:36:45] 2025-11-22 13:35:43,068 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-22 14:36:45] 2025-11-22 13:35:43,069 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-22 14:36:45] 2025-11-22 13:35:43,069 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-22 14:36:45] 2025-11-22 13:35:43,069 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-22 14:36:45] 2025-11-22 13:35:43,069 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-22 14:36:45] 2025-11-22 13:35:43,069 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-22 14:36:45] 2025-11-22 13:35:43,069 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-22 14:36:45] 2025-11-22 13:35:43,069 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-22 14:36:45] 2025-11-22 13:35:43,069 | INFO     | job 6891570973 has completed (purged errors)
[2025-11-22 14:36:45] 2025-11-22 13:35:43,069 | INFO     | overall cleanup function is called
[2025-11-22 14:36:45] 2025-11-22 13:35:44,087 | INFO     | --- collectZombieJob: --- 10, [2027]
[2025-11-22 14:36:45] 2025-11-22 13:35:44,088 | INFO     | zombie collector waiting for pid 2027
[2025-11-22 14:36:45] 2025-11-22 13:35:44,088 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-22 14:36:45] 2025-11-22 13:35:44,088 | INFO     | collected zombie processes
[2025-11-22 14:36:45] 2025-11-22 13:35:44,088 | INFO     | will attempt to kill all subprocesses of pid=2027
[2025-11-22 14:36:45] 2025-11-22 13:35:44,198 | INFO     | process IDs to be killed: [2027] (in reverse order)
[2025-11-22 14:36:45] 2025-11-22 13:35:44,347 | WARNING  | found no corresponding commands to process id(s)
[2025-11-22 14:36:45] 2025-11-22 13:35:44,348 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-22 14:36:45] 2025-11-22 13:35:44,351 | INFO     | did not find any defunct processes belonging to 2027
[2025-11-22 14:36:45] 2025-11-22 13:35:44,354 | INFO     | did not find any defunct processes belonging to 2027
[2025-11-22 14:36:45] 2025-11-22 13:35:44,356 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-22 14:36:45] 2025-11-22 13:35:44,356 | INFO     | ready for new job
[2025-11-22 14:36:45] 2025-11-22 13:35:44,357 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-22 14:36:45] 2025-11-22 13:35:44,363 | INFO     | ***************************************
[2025-11-22 14:36:45] 2025-11-22 13:35:44,363 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-22 14:36:45] 2025-11-22 13:35:44,364 | INFO     | ***************************************
[2025-11-22 14:36:45] 2025-11-22 13:35:44,364 | INFO     | 
[2025-11-22 14:36:45] 2025-11-22 13:35:44,364 | INFO     | pilot is running in a VM
[2025-11-22 14:36:45] 2025-11-22 13:35:44,364 | INFO     | architecture information:
[2025-11-22 14:36:45] 2025-11-22 13:35:44,365 | INFO     | executing command: cat /etc/os-release
[2025-11-22 14:36:45] 2025-11-22 13:35:44,387 | INFO     | cat /etc/os-release:
[2025-11-22 14:36:45] NAME="CentOS Linux"
[2025-11-22 14:36:45] VERSION="7 (Core)"
[2025-11-22 14:36:45] ID="centos"
[2025-11-22 14:36:45] ID_LIKE="rhel fedora"
[2025-11-22 14:36:45] VERSION_ID="7"
[2025-11-22 14:36:45] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-22 14:36:45] ANSI_COLOR="0;31"
[2025-11-22 14:36:45] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-22 14:36:45] HOME_URL="https://www.centos.org/"
[2025-11-22 14:36:45] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-22 14:36:45] 
[2025-11-22 14:36:45] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-22 14:36:45] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-22 14:36:45] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-22 14:36:45] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-22 14:36:45] 
[2025-11-22 14:36:45] 2025-11-22 13:35:44,388 | INFO     | ***************************************
[2025-11-22 14:36:45] 2025-11-22 13:35:44,892 | INFO     | executing command: df -mP /var/lib/boinc/slots/6
[2025-11-22 14:36:45] 2025-11-22 13:35:45,043 | INFO     | sufficient remaining disk space (494979252224 B)
[2025-11-22 14:36:45] 2025-11-22 13:35:45,044 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-22 14:36:45] 2025-11-22 13:35:45,044 | INFO     | current server update state: UPDATING_FINAL
[2025-11-22 14:36:45] 2025-11-22 13:35:45,044 | INFO     | update_server=False
[2025-11-22 14:36:45] 2025-11-22 13:35:45,044 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-22 14:36:45] 2025-11-22 13:35:45,044 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-22 14:36:45] 2025-11-22 13:35:45,045 | INFO     | aborting loop
[2025-11-22 14:36:45] 2025-11-22 13:35:45,608 | INFO     | all data control threads have been joined
[2025-11-22 14:36:45] 2025-11-22 13:35:46,006 | INFO     | all payload control threads have been joined
[2025-11-22 14:36:45] 2025-11-22 13:35:46,015 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-22 14:36:45] 2025-11-22 13:35:46,050 | INFO     | [job] retrieve thread has finished
[2025-11-22 14:36:45] 2025-11-22 13:35:46,052 | INFO     | [job] job monitor thread has finished
[2025-11-22 14:36:45] 2025-11-22 13:35:46,379 | INFO     | [job] create_data_payload thread has finished
[2025-11-22 14:36:45] 2025-11-22 13:35:46,580 | INFO     | [payload] validate_post thread has finished
[2025-11-22 14:36:45] 2025-11-22 13:35:46,615 | INFO     | [data] control thread has finished
[2025-11-22 14:36:45] 2025-11-22 13:35:46,661 | INFO     | [payload] execute_payloads thread has finished
[2025-11-22 14:36:45] 2025-11-22 13:35:46,748 | INFO     | all job control threads have been joined
[2025-11-22 14:36:45] 2025-11-22 13:35:47,014 | INFO     | [payload] control thread has finished
[2025-11-22 14:36:45] 2025-11-22 13:35:47,314 | INFO     | [payload] failed_post thread has finished
[2025-11-22 14:36:45] 2025-11-22 13:35:47,362 | INFO     | [job] validate thread has finished
[2025-11-22 14:36:45] 2025-11-22 13:35:47,409 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-22 14:36:45] 2025-11-22 13:35:47,506 | INFO     | [data] copytool_in thread has finished
[2025-11-22 14:36:45] 2025-11-22 13:35:47,539 | INFO     | [payload] validate_pre thread has finished
[2025-11-22 14:36:45] 2025-11-22 13:35:47,693 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-22 14:36:45] 2025-11-22 13:35:47,754 | INFO     | [job] control thread has finished
[2025-11-22 14:36:45] 2025-11-22 13:35:48,022 | INFO     | [data] copytool_out thread has finished
[2025-11-22 14:36:45] 2025-11-22 13:35:48,057 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-22 14:36:45] 2025-11-22 13:35:48,699 | INFO     | [job] queue monitor thread has finished
[2025-11-22 14:36:45] 2025-11-22 13:35:52,068 | INFO     | [data] queue_monitor thread has finished
[2025-11-22 14:36:45] 2025-11-22 13:36:15,123 | INFO     | PID=27883 has CPU usage=2.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-22 14:36:45] 2025-11-22 13:36:15,124 | INFO     | .. there are 9 such processes running
[2025-11-22 14:36:45] 2025-11-22 13:36:15,125 | INFO     | found 0 job(s) in 20 queues
[2025-11-22 14:36:45] 2025-11-22 13:36:15,126 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-22 14:36:45] 2025-11-22 13:36:15,126 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-22 14:36:45] 2025-11-22 13:36:34,896 | INFO     | [monitor] cgroup control has ended
[2025-11-22 14:36:45] 2025-11-22 13:36:35,443 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140612532803392)>', '<ExcThread(monitor, started 140612087031552)>']
[2025-11-22 14:36:45] 2025-11-22 13:36:36,251 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-22 14:36:45] 2025-11-22 13:36:36,252 | INFO     | [monitor] control thread has ended
[2025-11-22 14:36:45] 2025-11-22 13:36:40,468 | INFO     | all workflow threads have been joined
[2025-11-22 14:36:45] 2025-11-22 13:36:40,469 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-22 14:36:45] 2025-11-22 13:36:40,469 | INFO     | traces error code: 0
[2025-11-22 14:36:45] 2025-11-22 13:36:40,469 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-22 14:36:45] 2025-11-22 13:36:40,920 [wrapper] ==== pilot stdout END ====
[2025-11-22 14:36:45] 2025-11-22 13:36:41,019 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-22 14:36:45] 2025-11-22 13:36:41,119 [wrapper] pilotpid: 27883
[2025-11-22 14:36:45] 2025-11-22 13:36:41,220 [wrapper] Pilot exit status: 0
[2025-11-22 14:36:45] 2025-11-22 13:36:41,707 [wrapper] pandaids: 6891570973
[2025-11-22 14:36:45] 2025-11-22 13:36:42,291 [wrapper] cleanup supervisor_pilot 17503 27884
[2025-11-22 14:36:45] 2025-11-22 13:36:42,407 [wrapper] Test setup, not cleaning
[2025-11-22 14:36:45] 2025-11-22 13:36:42,516 [wrapper] apfmon messages muted
[2025-11-22 14:36:45] 2025-11-22 13:36:42,639 [wrapper] ==== wrapper stdout END ====
[2025-11-22 14:36:45] 2025-11-22 13:36:42,704 [wrapper] ==== wrapper stderr END ====
[2025-11-22 14:36:45]  *** Error codes and diagnostics ***
[2025-11-22 14:36:45]     "exeErrorCode": 0,
[2025-11-22 14:36:45]     "exeErrorDiag": "",
[2025-11-22 14:36:45]     "pilotErrorCode": 0,
[2025-11-22 14:36:45]     "pilotErrorDiag": "",
[2025-11-22 14:36:45]  *** Listing of results directory ***
[2025-11-22 14:36:45] total 1318888
[2025-11-22 14:36:45] -rw-r--r--. 1 boinc boinc    576529 Nov 18 16:15 pilot3.tar.gz
[2025-11-22 14:36:45] -rw-r--r--. 1 boinc boinc      5112 Nov 18 16:42 queuedata.json
[2025-11-22 14:36:45] -rwx------. 1 boinc boinc     36292 Nov 18 16:43 runpilot2-wrapper.sh
[2025-11-22 14:36:45] -rw-r--r--. 1 boinc boinc       100 Nov 21 13:08 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-22 14:36:45] -rwxr-xr-x. 1 boinc boinc      7986 Nov 21 13:08 run_atlas
[2025-11-22 14:36:45] -rw-r--r--. 1 boinc boinc       105 Nov 21 13:08 job.xml
[2025-11-22 14:36:45] -rw-r--r--. 2 boinc boinc 408763453 Nov 21 13:08 EVNT.47493065._000260.pool.root.1
[2025-11-22 14:36:45] -rw-r--r--. 2 boinc boinc     15120 Nov 21 13:08 start_atlas.sh
[2025-11-22 14:36:45] drwxrwx--x. 2 boinc boinc        68 Nov 21 13:08 shared
[2025-11-22 14:36:45] -rw-r--r--. 2 boinc boinc    590101 Nov 21 13:08 input.tar.gz
[2025-11-22 14:36:45] -rw-r--r--. 1 boinc boinc      6389 Nov 21 13:08 init_data.xml
[2025-11-22 14:36:45] -rw-r--r--. 1 boinc boinc         0 Nov 21 13:08 boinc_lockfile
[2025-11-22 14:36:45] -rw-r--r--. 1 boinc boinc      2773 Nov 21 13:09 pandaJob.out
[2025-11-22 14:36:45] -rw-------. 1 boinc boinc    989817 Nov 21 13:12 agis_schedconf.cvmfs.json
[2025-11-22 14:36:45] drwx------. 5 boinc boinc      4096 Nov 21 13:12 pilot3
[2025-11-22 14:36:45] -rw-r--r--. 1 boinc boinc       533 Nov 22 14:10 boinc_task_state.xml
[2025-11-22 14:36:45] -rw-------. 1 boinc boinc 908355293 Nov 22 14:32 HITS.47493068._002596.pool.root.1
[2025-11-22 14:36:45] -rw-------. 1 boinc boinc      1030 Nov 22 14:33 memory_monitor_summary.json
[2025-11-22 14:36:45] -rw-------. 1 boinc boinc   1526164 Nov 22 14:33 agis_ddmendpoints.agis.ALL.json
[2025-11-22 14:36:45] -rw-------. 1 boinc boinc   2569286 Nov 22 14:33 log.47493068._002596.job.log.tgz.1
[2025-11-22 14:36:45] -rw-------. 1 boinc boinc      8629 Nov 22 14:35 heartbeat.json
[2025-11-22 14:36:45] -rw-------. 1 boinc boinc        95 Nov 22 14:36 pilot_heartbeat.json
[2025-11-22 14:36:45] -rw-r--r--. 1 boinc boinc      8192 Nov 22 14:36 boinc_mmap_file
[2025-11-22 14:36:45] -rw-r--r--. 1 boinc boinc        29 Nov 22 14:36 wrapper_checkpoint.txt
[2025-11-22 14:36:45] -rw-------. 1 boinc boinc      4884 Nov 22 14:36 pilotlog.txt
[2025-11-22 14:36:45] -rw-------. 1 boinc boinc  12183121 Nov 22 14:36 log.47493068._002596.job.log.1
[2025-11-22 14:36:45] -rw-------. 1 boinc boinc       353 Nov 22 14:36 output.list
[2025-11-22 14:36:45] -rw-r--r--. 1 boinc boinc       620 Nov 22 14:36 runtime_log
[2025-11-22 14:36:45] -rw-------. 1 boinc boinc  14776320 Nov 22 14:36 result.tar.gz
[2025-11-22 14:36:45] -rw-r--r--. 1 boinc boinc      8703 Nov 22 14:36 runtime_log.err
[2025-11-22 14:36:45] -rw-------. 1 boinc boinc       662 Nov 22 14:36 g4ANDmY2cf8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmPeFKDm5Frnzn.diag
[2025-11-22 14:36:45] -rw-r--r--. 1 boinc boinc     21500 Nov 22 14:36 stderr.txt
[2025-11-22 14:36:45] HITS file was successfully produced:
[2025-11-22 14:36:45] -rw-------. 1 boinc boinc 908355293 Nov 22 14:32 shared/HITS.pool.root.1
[2025-11-22 14:36:45]  *** Contents of shared directory: ***
[2025-11-22 14:36:45] total 1301280
[2025-11-22 14:36:45] -rw-r--r--. 2 boinc boinc 408763453 Nov 21 13:08 ATLAS.root_0
[2025-11-22 14:36:45] -rw-r--r--. 2 boinc boinc     15120 Nov 21 13:08 start_atlas.sh
[2025-11-22 14:36:45] -rw-r--r--. 2 boinc boinc    590101 Nov 21 13:08 input.tar.gz
[2025-11-22 14:36:45] -rw-------. 1 boinc boinc 908355293 Nov 22 14:32 HITS.pool.root.1
[2025-11-22 14:36:45] -rw-------. 1 boinc boinc  14776320 Nov 22 14:36 result.tar.gz
14:36:47 (24107): run_atlas exited; CPU time 337406.178801
14:36:47 (24107): called boinc_finish(0)

</stderr_txt>
]]>

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