Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
23:56:04 (4561): wrapper (7.7.26015): starting
23:56:04 (4561): wrapper: running run_atlas (--nthreads 8)
[2025-11-20 23:56:04] Arguments: --nthreads 8
[2025-11-20 23:56:04] Threads: 8
[2025-11-20 23:56:04] Checking for CVMFS
[2025-11-20 23:56:05] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-20 23:56:06] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-20 23:56:06] Running cvmfs_config stat atlas.cern.ch
[2025-11-20 23:56:07] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-20 23:56:07] 2.11.2.0 21664 164163 142392 153098 1 291 25080003 25165824 4608 130560 2 54574735 99.877 30554360 2577 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-20 23:56:07] CVMFS is ok
[2025-11-20 23:56:07] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-20 23:56:07] Checking for apptainer binary...
[2025-11-20 23:56:07] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-20 23:56:07] Running /usr/bin/apptainer --version
[2025-11-20 23:56:07] apptainer version 1.3.2-1.el7
[2025-11-20 23:56:07] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-20 23:56:11] cg-vwn258.simple-grid.lan
[2025-11-20 23:56:11] apptainer works
[2025-11-20 23:56:11] Set ATHENA_PROC_NUMBER=8
[2025-11-20 23:56:11] Set ATHENA_CORE_NUMBER=8
[2025-11-20 23:56:11] Starting ATLAS job with PandaID=6891589318
[2025-11-20 23:56:11] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-22 01:02:37]  *** The last 200 lines of the pilot log: ***
[2025-11-22 01:02:37] 2025-11-22 00:01:29,332 | INFO     | time since job start (90099s) is within the limit (172800.0s)
[2025-11-22 01:02:37] 2025-11-22 00:01:29,809 | INFO     | monitor loop #6063: job 0:6891589318 is in state 'finished'
[2025-11-22 01:02:37] 2025-11-22 00:01:29,810 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-22 01:02:37] 2025-11-22 00:01:31,340 | INFO     | time since job start (90101s) is within the limit (172800.0s)
[2025-11-22 01:02:37] 2025-11-22 00:01:32,315 | INFO     | monitor loop #6064: job 0:6891589318 is in state 'finished'
[2025-11-22 01:02:37] 2025-11-22 00:01:32,316 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-22 01:02:37] 2025-11-22 00:01:33,348 | INFO     | time since job start (90103s) is within the limit (172800.0s)
[2025-11-22 01:02:37] 2025-11-22 00:01:34,820 | INFO     | monitor loop #6065: job 0:6891589318 is in state 'finished'
[2025-11-22 01:02:37] 2025-11-22 00:01:34,820 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-22 01:02:37] 2025-11-22 00:01:35,354 | INFO     | time since job start (90105s) is within the limit (172800.0s)
[2025-11-22 01:02:37] 2025-11-22 00:01:37,335 | INFO     | monitor loop #6066: job 0:6891589318 is in state 'finished'
[2025-11-22 01:02:37] 2025-11-22 00:01:37,335 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-22 01:02:37] 2025-11-22 00:01:37,364 | INFO     | time since job start (90107s) is within the limit (172800.0s)
[2025-11-22 01:02:37] 2025-11-22 00:01:39,374 | INFO     | time since job start (90109s) is within the limit (172800.0s)
[2025-11-22 01:02:37] 2025-11-22 00:01:39,843 | INFO     | monitor loop #6067: job 0:6891589318 is in state 'finished'
[2025-11-22 01:02:37] 2025-11-22 00:01:39,844 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-22 01:02:37] 2025-11-22 00:01:40,313 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-22 01:02:37] 2025-11-22 00:01:40,314 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-11-22 01:02:37] 2025-11-22 00:01:40,316 | INFO     | using path: /var/lib/boinc/slots/5/PanDA_Pilot-6891589318/memory_monitor_summary.json (trf name=prmon)
[2025-11-22 01:02:37] 2025-11-22 00:01:40,317 | INFO     | extracted standard info from prmon json
[2025-11-22 01:02:37] 2025-11-22 00:01:40,317 | INFO     | extracted standard memory fields from prmon json
[2025-11-22 01:02:37] 2025-11-22 00:01:40,317 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-22 01:02:37] 2025-11-22 00:01:40,348 | INFO     | fitting pss+swap vs Time
[2025-11-22 01:02:37] 2025-11-22 00:01:40,350 | INFO     | sum of square deviations: 978968214888.6749
[2025-11-22 01:02:37] 2025-11-22 00:01:40,410 | INFO     | sum of deviations: 3902454612622.1875
[2025-11-22 01:02:37] 2025-11-22 00:01:40,411 | INFO     | mean x: 1763724850.173824
[2025-11-22 01:02:37] 2025-11-22 00:01:40,411 | INFO     | mean y: 2852811.4894342194
[2025-11-22 01:02:37] 2025-11-22 00:01:40,411 | INFO     | intersect: -7027872060.144843
[2025-11-22 01:02:37] 2025-11-22 00:01:40,413 | INFO     | chi2: 19.84756746371034
[2025-11-22 01:02:37] 2025-11-22 00:01:40,415 | INFO     | sum of square deviations: 968992915839.261
[2025-11-22 01:02:37] 2025-11-22 00:01:40,477 | INFO     | sum of deviations: 4383474193961.4155
[2025-11-22 01:02:37] 2025-11-22 00:01:40,477 | INFO     | mean x: 1763724697.6778386
[2025-11-22 01:02:37] 2025-11-22 00:01:40,477 | INFO     | mean y: 2860164.0369357043
[2025-11-22 01:02:37] 2025-11-22 00:01:40,477 | INFO     | intersect: -7975775769.361036
[2025-11-22 01:02:37] 2025-11-22 00:01:40,479 | INFO     | chi2: 16.781883218661957
[2025-11-22 01:02:37] 2025-11-22 00:01:40,479 | INFO     | current chi2=16.781883218661957 (change=15.446145985666698 %)
[2025-11-22 01:02:37] 2025-11-22 00:01:40,479 | INFO     | right removable region: 1461
[2025-11-22 01:02:37] 2025-11-22 00:01:40,482 | INFO     | sum of square deviations: 968991865419.2612
[2025-11-22 01:02:37] 2025-11-22 00:01:40,537 | INFO     | sum of deviations: 3273043564802.961
[2025-11-22 01:02:37] 2025-11-22 00:01:40,537 | INFO     | mean x: 1763725002.6778386
[2025-11-22 01:02:37] 2025-11-22 00:01:40,537 | INFO     | mean y: 2862432.757865937
[2025-11-22 01:02:37] 2025-11-22 00:01:40,538 | INFO     | intersect: -5954616650.514979
[2025-11-22 01:02:37] 2025-11-22 00:01:40,539 | INFO     | chi2: 14.914371729979873
[2025-11-22 01:02:37] 2025-11-22 00:01:40,540 | INFO     | current chi2=14.914371729979873 (change=24.855417384273483 %)
[2025-11-22 01:02:37] 2025-11-22 00:01:40,540 | INFO     | left removable region: 10
[2025-11-22 01:02:37] 2025-11-22 00:01:40,542 | INFO     | sum of square deviations: 947284194130.3859
[2025-11-22 01:02:37] 2025-11-22 00:01:40,601 | INFO     | sum of deviations: 3351042069378.8623
[2025-11-22 01:02:37] 2025-11-22 00:01:40,602 | INFO     | mean x: 1763724972.1867678
[2025-11-22 01:02:37] 2025-11-22 00:01:40,602 | INFO     | mean y: 2879759.5761543764
[2025-11-22 01:02:37] 2025-11-22 00:01:40,602 | INFO     | intersect: -6236342447.691474
[2025-11-22 01:02:37] 2025-11-22 00:01:40,604 | INFO     | chi2: 7.615511347412075
[2025-11-22 01:02:37] 2025-11-22 00:01:40,604 | INFO     | current memory leak: 3.54 B/s (using 1451 data points, chi2=7.62)
[2025-11-22 01:02:37] 2025-11-22 00:01:40,607 | INFO     | could have reported an average CPU frequency of 1999 MHz (50 samples)
[2025-11-22 01:02:37] 2025-11-22 00:01:40,607 | INFO     | ..............................
[2025-11-22 01:02:37] 2025-11-22 00:01:40,607 | INFO     | . Timing measurements:
[2025-11-22 01:02:37] 2025-11-22 00:01:40,607 | INFO     | . get job = 0 s
[2025-11-22 01:02:37] 2025-11-22 00:01:40,607 | INFO     | . initial setup = 5 s
[2025-11-22 01:02:37] 2025-11-22 00:01:40,607 | INFO     | . payload setup = 186 s
[2025-11-22 01:02:37] 2025-11-22 00:01:40,608 | INFO     | . stage-in = 0 s
[2025-11-22 01:02:37] 2025-11-22 00:01:40,608 | INFO     | . payload execution = 89616 s
[2025-11-22 01:02:37] 2025-11-22 00:01:40,608 | INFO     | . stage-out = 4 s
[2025-11-22 01:02:37] 2025-11-22 00:01:40,608 | INFO     | . log creation = 1 s
[2025-11-22 01:02:37] 2025-11-22 00:01:40,608 | INFO     | ..............................
[2025-11-22 01:02:37] 2025-11-22 00:01:40,737 | INFO     | 
[2025-11-22 01:02:37] 2025-11-22 00:01:40,737 | INFO     | job summary report
[2025-11-22 01:02:37] 2025-11-22 00:01:40,737 | INFO     | --------------------------------------------------
[2025-11-22 01:02:37] 2025-11-22 00:01:40,737 | INFO     | PanDA job id: 6891589318
[2025-11-22 01:02:37] 2025-11-22 00:01:40,738 | INFO     | task id: 47493068
[2025-11-22 01:02:37] 2025-11-22 00:01:40,738 | INFO     | errors: (none)
[2025-11-22 01:02:37] 2025-11-22 00:01:40,738 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-22 01:02:37] 2025-11-22 00:01:40,738 | INFO     | pilot state: finished 
[2025-11-22 01:02:37] 2025-11-22 00:01:40,738 | INFO     | transexitcode: 0
[2025-11-22 01:02:37] 2025-11-22 00:01:40,738 | INFO     | exeerrorcode: 0
[2025-11-22 01:02:37] 2025-11-22 00:01:40,738 | INFO     | exeerrordiag: 
[2025-11-22 01:02:37] 2025-11-22 00:01:40,738 | INFO     | exitcode: 0
[2025-11-22 01:02:37] 2025-11-22 00:01:40,738 | INFO     | exitmsg: OK
[2025-11-22 01:02:37] 2025-11-22 00:01:40,738 | INFO     | cpuconsumptiontime: 333617 s
[2025-11-22 01:02:37] 2025-11-22 00:01:40,738 | INFO     | nevents: 1000
[2025-11-22 01:02:37] 2025-11-22 00:01:40,738 | INFO     | neventsw: 0
[2025-11-22 01:02:37] 2025-11-22 00:01:40,738 | INFO     | pid: 14948
[2025-11-22 01:02:37] 2025-11-22 00:01:40,739 | INFO     | pgrp: 14948
[2025-11-22 01:02:37] 2025-11-22 00:01:40,739 | INFO     | corecount: 8
[2025-11-22 01:02:37] 2025-11-22 00:01:40,739 | INFO     | event service: False
[2025-11-22 01:02:37] 2025-11-22 00:01:40,739 | INFO     | sizes: {0: 2297968, 1: 2298824, 2: 2298852, 12: 2298852, 23: 2298880, 34: 2298908, 45: 2299064, 56: 2299092, 66: 2299120, 77: 2299148, 88: 2299204, 99: 2299512, 10
[2025-11-22 01:02:37] 2025-11-22 00:01:40,739 | INFO     | --------------------------------------------------
[2025-11-22 01:02:37] 2025-11-22 00:01:40,739 | INFO     | 
[2025-11-22 01:02:37] 2025-11-22 00:01:40,740 | INFO     | executing command: ls -lF /var/lib/boinc/slots/5
[2025-11-22 01:02:37] 2025-11-22 00:01:40,767 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-22 01:02:37] 2025-11-22 00:01:40,768 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-22 01:02:37] 2025-11-22 00:01:40,768 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-22 01:02:37] 2025-11-22 00:01:40,768 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-22 01:02:37] 2025-11-22 00:01:40,768 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-22 01:02:37] 2025-11-22 00:01:40,768 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-22 01:02:37] 2025-11-22 00:01:40,768 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-22 01:02:37] 2025-11-22 00:01:40,768 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-22 01:02:37] 2025-11-22 00:01:40,768 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-22 01:02:37] 2025-11-22 00:01:40,768 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-22 01:02:37] 2025-11-22 00:01:40,768 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-22 01:02:37] 2025-11-22 00:01:40,769 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-22 01:02:37] 2025-11-22 00:01:40,769 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-22 01:02:37] 2025-11-22 00:01:40,769 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-22 01:02:37] 2025-11-22 00:01:40,769 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-22 01:02:37] 2025-11-22 00:01:40,769 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-22 01:02:37] 2025-11-22 00:01:40,769 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-22 01:02:37] 2025-11-22 00:01:40,770 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-22 01:02:37] 2025-11-22 00:01:40,770 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-22 01:02:37] 2025-11-22 00:01:40,770 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-22 01:02:37] 2025-11-22 00:01:40,770 | INFO     | job 6891589318 has completed (purged errors)
[2025-11-22 01:02:37] 2025-11-22 00:01:40,770 | INFO     | overall cleanup function is called
[2025-11-22 01:02:37] 2025-11-22 00:01:41,789 | INFO     | --- collectZombieJob: --- 10, [14948]
[2025-11-22 01:02:37] 2025-11-22 00:01:41,790 | INFO     | zombie collector waiting for pid 14948
[2025-11-22 01:02:37] 2025-11-22 00:01:41,790 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-22 01:02:37] 2025-11-22 00:01:41,790 | INFO     | collected zombie processes
[2025-11-22 01:02:37] 2025-11-22 00:01:41,790 | INFO     | will attempt to kill all subprocesses of pid=14948
[2025-11-22 01:02:37] 2025-11-22 00:01:41,894 | INFO     | process IDs to be killed: [14948] (in reverse order)
[2025-11-22 01:02:37] 2025-11-22 00:01:41,982 | WARNING  | found no corresponding commands to process id(s)
[2025-11-22 01:02:37] 2025-11-22 00:01:41,983 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-22 01:02:37] 2025-11-22 00:01:41,986 | INFO     | did not find any defunct processes belonging to 14948
[2025-11-22 01:02:37] 2025-11-22 00:01:41,990 | INFO     | did not find any defunct processes belonging to 14948
[2025-11-22 01:02:37] 2025-11-22 00:01:41,993 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-22 01:02:37] 2025-11-22 00:01:41,993 | INFO     | ready for new job
[2025-11-22 01:02:37] 2025-11-22 00:01:41,994 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-22 01:02:37] 2025-11-22 00:01:42,001 | INFO     | ***************************************
[2025-11-22 01:02:37] 2025-11-22 00:01:42,001 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-22 01:02:37] 2025-11-22 00:01:42,001 | INFO     | ***************************************
[2025-11-22 01:02:37] 2025-11-22 00:01:42,001 | INFO     | 
[2025-11-22 01:02:37] 2025-11-22 00:01:42,002 | INFO     | pilot is running in a VM
[2025-11-22 01:02:37] 2025-11-22 00:01:42,002 | INFO     | architecture information:
[2025-11-22 01:02:37] 2025-11-22 00:01:42,003 | INFO     | executing command: cat /etc/os-release
[2025-11-22 01:02:37] 2025-11-22 00:01:42,024 | INFO     | cat /etc/os-release:
[2025-11-22 01:02:37] NAME="CentOS Linux"
[2025-11-22 01:02:37] VERSION="7 (Core)"
[2025-11-22 01:02:37] ID="centos"
[2025-11-22 01:02:37] ID_LIKE="rhel fedora"
[2025-11-22 01:02:37] VERSION_ID="7"
[2025-11-22 01:02:37] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-22 01:02:37] ANSI_COLOR="0;31"
[2025-11-22 01:02:37] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-22 01:02:37] HOME_URL="https://www.centos.org/"
[2025-11-22 01:02:37] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-22 01:02:37] 
[2025-11-22 01:02:37] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-22 01:02:37] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-22 01:02:37] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-22 01:02:37] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-22 01:02:37] 
[2025-11-22 01:02:37] 2025-11-22 00:01:42,025 | INFO     | ***************************************
[2025-11-22 01:02:37] 2025-11-22 00:01:42,529 | INFO     | executing command: df -mP /var/lib/boinc/slots/5
[2025-11-22 01:02:37] 2025-11-22 00:01:42,690 | INFO     | sufficient remaining disk space (495023292416 B)
[2025-11-22 01:02:37] 2025-11-22 00:01:42,691 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-22 01:02:37] 2025-11-22 00:01:42,691 | INFO     | current server update state: UPDATING_FINAL
[2025-11-22 01:02:37] 2025-11-22 00:01:42,691 | INFO     | update_server=False
[2025-11-22 01:02:37] 2025-11-22 00:01:42,691 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-22 01:02:37] 2025-11-22 00:01:42,691 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-22 01:02:37] 2025-11-22 00:01:43,162 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-22 01:02:37] 2025-11-22 00:01:43,220 | INFO     | all data control threads have been joined
[2025-11-22 01:02:37] 2025-11-22 00:01:43,371 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-22 01:02:37] 2025-11-22 00:01:43,372 | INFO     | aborting loop
[2025-11-22 01:02:37] 2025-11-22 00:01:43,699 | INFO     | [job] queue monitor thread has finished
[2025-11-22 01:02:37] 2025-11-22 00:01:43,699 | INFO     | [job] retrieve thread has finished
[2025-11-22 01:02:37] 2025-11-22 00:01:43,707 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-22 01:02:37] 2025-11-22 00:01:43,738 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-22 01:02:37] 2025-11-22 00:01:43,906 | INFO     | all job control threads have been joined
[2025-11-22 01:02:37] 2025-11-22 00:01:44,118 | INFO     | all payload control threads have been joined
[2025-11-22 01:02:37] 2025-11-22 00:01:44,120 | INFO     | [payload] execute_payloads thread has finished
[2025-11-22 01:02:37] 2025-11-22 00:01:44,134 | INFO     | [job] validate thread has finished
[2025-11-22 01:02:37] 2025-11-22 00:01:44,231 | INFO     | [data] control thread has finished
[2025-11-22 01:02:37] 2025-11-22 00:01:44,377 | INFO     | [job] job monitor thread has finished
[2025-11-22 01:02:37] 2025-11-22 00:01:44,730 | INFO     | [payload] validate_pre thread has finished
[2025-11-22 01:02:37] 2025-11-22 00:01:44,875 | INFO     | [job] create_data_payload thread has finished
[2025-11-22 01:02:37] 2025-11-22 00:01:44,897 | INFO     | [data] copytool_in thread has finished
[2025-11-22 01:02:37] 2025-11-22 00:01:44,912 | INFO     | [job] control thread has finished
[2025-11-22 01:02:37] 2025-11-22 00:01:44,997 | INFO     | [payload] failed_post thread has finished
[2025-11-22 01:02:37] 2025-11-22 00:01:45,050 | INFO     | [payload] validate_post thread has finished
[2025-11-22 01:02:37] 2025-11-22 00:01:45,124 | INFO     | [payload] control thread has finished
[2025-11-22 01:02:37] 2025-11-22 00:01:45,169 | INFO     | [data] copytool_out thread has finished
[2025-11-22 01:02:37] 2025-11-22 00:01:47,748 | INFO     | [data] queue_monitor thread has finished
[2025-11-22 01:02:37] 2025-11-22 00:02:12,567 | INFO     | PID=8347 has CPU usage=1.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-11-22 01:02:37] 2025-11-22 00:02:12,567 | INFO     | .. there are 9 such processes running
[2025-11-22 01:02:37] 2025-11-22 00:02:12,569 | INFO     | found 0 job(s) in 20 queues
[2025-11-22 01:02:37] 2025-11-22 00:02:12,569 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-22 01:02:37] 2025-11-22 00:02:12,569 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-22 01:02:37] 2025-11-22 00:02:27,046 | INFO     | [monitor] cgroup control has ended
[2025-11-22 01:02:37] 2025-11-22 00:02:27,200 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140009436886848)>', '<ExcThread(monitor, started 140009004848896)>']
[2025-11-22 01:02:37] 2025-11-22 00:02:27,657 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-22 01:02:37] 2025-11-22 00:02:27,658 | INFO     | [monitor] control thread has ended
[2025-11-22 01:02:37] 2025-11-22 00:02:32,226 | INFO     | all workflow threads have been joined
[2025-11-22 01:02:37] 2025-11-22 00:02:32,227 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-22 01:02:37] 2025-11-22 00:02:32,227 | INFO     | traces error code: 0
[2025-11-22 01:02:37] 2025-11-22 00:02:32,227 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-22 01:02:37] 2025-11-22 00:02:32,618 [wrapper] ==== pilot stdout END ====
[2025-11-22 01:02:37] 2025-11-22 00:02:32,665 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-22 01:02:37] 2025-11-22 00:02:32,762 [wrapper] pilotpid: 8347
[2025-11-22 01:02:37] 2025-11-22 00:02:32,850 [wrapper] Pilot exit status: 0
[2025-11-22 01:02:37] 2025-11-22 00:02:33,165 [wrapper] pandaids: 6891589318
[2025-11-22 01:02:37] 2025-11-22 00:02:34,237 [wrapper] cleanup supervisor_pilot  9555 8348
[2025-11-22 01:02:37] 2025-11-22 00:02:34,349 [wrapper] Test setup, not cleaning
[2025-11-22 01:02:37] 2025-11-22 00:02:34,422 [wrapper] apfmon messages muted
[2025-11-22 01:02:37] 2025-11-22 00:02:34,517 [wrapper] ==== wrapper stdout END ====
[2025-11-22 01:02:37] 2025-11-22 00:02:34,618 [wrapper] ==== wrapper stderr END ====
[2025-11-22 01:02:37]  *** Error codes and diagnostics ***
[2025-11-22 01:02:37]     "exeErrorCode": 0,
[2025-11-22 01:02:37]     "exeErrorDiag": "",
[2025-11-22 01:02:37]     "pilotErrorCode": 0,
[2025-11-22 01:02:37]     "pilotErrorDiag": "",
[2025-11-22 01:02:37]  *** Listing of results directory ***
[2025-11-22 01:02:37] total 1319736
[2025-11-22 01:02:37] -rw-r--r--. 1 boinc boinc    576529 Nov 18 18:46 pilot3.tar.gz
[2025-11-22 01:02:37] -rwx------. 1 boinc boinc     36292 Nov 18 18:49 runpilot2-wrapper.sh
[2025-11-22 01:02:37] -rw-r--r--. 1 boinc boinc      5112 Nov 18 18:49 queuedata.json
[2025-11-22 01:02:37] -rw-r--r--. 1 boinc boinc       100 Nov 20 23:56 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-22 01:02:37] -rwxr-xr-x. 1 boinc boinc      7986 Nov 20 23:56 run_atlas
[2025-11-22 01:02:37] -rw-r--r--. 1 boinc boinc       105 Nov 20 23:56 job.xml
[2025-11-22 01:02:37] -rw-r--r--. 1 boinc boinc      6388 Nov 20 23:56 init_data.xml
[2025-11-22 01:02:37] -rw-r--r--. 2 boinc boinc 407722859 Nov 20 23:56 EVNT.47493065._000530.pool.root.1
[2025-11-22 01:02:37] drwxrwx--x. 2 boinc boinc        68 Nov 20 23:56 shared
[2025-11-22 01:02:37] -rw-r--r--. 2 boinc boinc    590094 Nov 20 23:56 input.tar.gz
[2025-11-22 01:02:37] -rw-r--r--. 2 boinc boinc     15120 Nov 20 23:56 start_atlas.sh
[2025-11-22 01:02:37] -rw-r--r--. 1 boinc boinc         0 Nov 20 23:56 boinc_lockfile
[2025-11-22 01:02:37] -rw-r--r--. 1 boinc boinc      2773 Nov 20 23:56 pandaJob.out
[2025-11-22 01:02:37] -rw-------. 1 boinc boinc    989825 Nov 20 23:59 agis_schedconf.cvmfs.json
[2025-11-22 01:02:37] drwx------. 5 boinc boinc      4096 Nov 20 23:59 pilot3
[2025-11-22 01:02:37] -rw-r--r--. 1 boinc boinc       533 Nov 22 00:36 boinc_task_state.xml
[2025-11-22 01:02:37] -rw-------. 1 boinc boinc 910711082 Nov 22 00:59 HITS.47493068._005300.pool.root.1
[2025-11-22 01:02:37] -rw-------. 1 boinc boinc      1033 Nov 22 00:59 memory_monitor_summary.json
[2025-11-22 01:02:37] -rw-------. 1 boinc boinc   1526164 Nov 22 01:00 agis_ddmendpoints.agis.ALL.json
[2025-11-22 01:02:37] -rw-------. 1 boinc boinc   2539429 Nov 22 01:00 log.47493068._005300.job.log.tgz.1
[2025-11-22 01:02:37] -rw-------. 1 boinc boinc      8630 Nov 22 01:01 heartbeat.json
[2025-11-22 01:02:37] -rw-r--r--. 1 boinc boinc      8192 Nov 22 01:02 boinc_mmap_file
[2025-11-22 01:02:37] -rw-r--r--. 1 boinc boinc        29 Nov 22 01:02 wrapper_checkpoint.txt
[2025-11-22 01:02:37] -rw-------. 1 boinc boinc        95 Nov 22 01:02 pilot_heartbeat.json
[2025-11-22 01:02:37] -rw-------. 1 boinc boinc      4883 Nov 22 01:02 pilotlog.txt
[2025-11-22 01:02:37] -rw-------. 1 boinc boinc  11993765 Nov 22 01:02 log.47493068._005300.job.log.1
[2025-11-22 01:02:37] -rw-------. 1 boinc boinc       353 Nov 22 01:02 output.list
[2025-11-22 01:02:37] -rw-r--r--. 1 boinc boinc       620 Nov 22 01:02 runtime_log
[2025-11-22 01:02:37] -rw-------. 1 boinc boinc  14551040 Nov 22 01:02 result.tar.gz
[2025-11-22 01:02:37] -rw-r--r--. 1 boinc boinc      8703 Nov 22 01:02 runtime_log.err
[2025-11-22 01:02:37] -rw-------. 1 boinc boinc       662 Nov 22 01:02 IfLLDmz0ef8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmC8FKDmZiptjm.diag
[2025-11-22 01:02:37] -rw-r--r--. 1 boinc boinc     21192 Nov 22 01:02 stderr.txt
[2025-11-22 01:02:37] HITS file was successfully produced:
[2025-11-22 01:02:37] -rw-------. 1 boinc boinc 910711082 Nov 22 00:59 shared/HITS.pool.root.1
[2025-11-22 01:02:37]  *** Contents of shared directory: ***
[2025-11-22 01:02:37] total 1302344
[2025-11-22 01:02:37] -rw-r--r--. 2 boinc boinc 407722859 Nov 20 23:56 ATLAS.root_0
[2025-11-22 01:02:37] -rw-r--r--. 2 boinc boinc    590094 Nov 20 23:56 input.tar.gz
[2025-11-22 01:02:37] -rw-r--r--. 2 boinc boinc     15120 Nov 20 23:56 start_atlas.sh
[2025-11-22 01:02:37] -rw-------. 1 boinc boinc 910711082 Nov 22 00:59 HITS.pool.root.1
[2025-11-22 01:02:37] -rw-------. 1 boinc boinc  14551040 Nov 22 01:02 result.tar.gz
01:02:38 (4561): run_atlas exited; CPU time 334202.554931
01:02:38 (4561): called boinc_finish(0)

</stderr_txt>
]]>

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