Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
20:20:20 (197146): wrapper (7.7.26015): starting
20:20:20 (197146): wrapper: running run_atlas (--nthreads 3)
[2025-11-18 20:20:20] Arguments: --nthreads 3
[2025-11-18 20:20:20] Threads: 3
[2025-11-18 20:20:20] Checking for CVMFS
[2025-11-18 20:20:20] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-18 20:20:20] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-18 20:20:20] Running cvmfs_config stat atlas.cern.ch
[2025-11-18 20:20:21] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-18 20:20:21] 2.9.2.0 4099368 61 56428 153012 2 88 34148412 36864000 0 130560 0 876928 99.843 134819 7489 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-18 20:20:21] CVMFS is ok
[2025-11-18 20:20:21] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-18 20:20:21] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-18 20:20:21] Further information can be found at the LHC@home message board.
[2025-11-18 20:20:21] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-18 20:20:21] Checking for apptainer binary...
[2025-11-18 20:20:21] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-18 20:20:21] Running /usr/bin/apptainer --version
[2025-11-18 20:20:21] apptainer version 1.4.1-1.1
[2025-11-18 20:20:21] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-18 20:20:21] thA335
[2025-11-18 20:20:21] apptainer works
[2025-11-18 20:20:21] Set ATHENA_PROC_NUMBER=3
[2025-11-18 20:20:21] Set ATHENA_CORE_NUMBER=3
[2025-11-18 20:20:21] Starting ATLAS job with PandaID=6891570939
[2025-11-18 20:20:21] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-18 20:24:40]  *** The last 200 lines of the pilot log: ***
[2025-11-18 20:24:40] 2025-11-18 19:23:52,793 | INFO     | sufficient remaining disk space (827910520832 B)
[2025-11-18 20:24:40] 2025-11-18 19:23:52,793 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-18 20:24:40] 2025-11-18 19:23:52,793 | INFO     | current server update state: UPDATING_FINAL
[2025-11-18 20:24:40] 2025-11-18 19:23:52,793 | INFO     | update_server=False
[2025-11-18 20:24:40] 2025-11-18 19:23:52,793 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-18 20:24:40] 2025-11-18 19:23:52,793 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-18 20:24:40] 2025-11-18 19:23:52,794 | INFO     | aborting loop
[2025-11-18 20:24:40] 2025-11-18 19:23:52,794 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-18 20:24:40] 2025-11-18 19:23:53,580 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-18 20:24:40] 2025-11-18 19:23:53,711 | INFO     | all job control threads have been joined
[2025-11-18 20:24:40] 2025-11-18 19:23:53,799 | INFO     | [job] retrieve thread has finished
[2025-11-18 20:24:40] 2025-11-18 19:23:53,800 | INFO     | [job] queue monitor thread has finished
[2025-11-18 20:24:40] 2025-11-18 19:23:53,800 | INFO     | [job] job monitor thread has finished
[2025-11-18 20:24:40] 2025-11-18 19:23:53,844 | INFO     | [payload] validate_pre thread has finished
[2025-11-18 20:24:40] 2025-11-18 19:23:53,859 | INFO     | all data control threads have been joined
[2025-11-18 20:24:40] 2025-11-18 19:23:54,051 | INFO     | [data] copytool_in thread has finished
[2025-11-18 20:24:40] 2025-11-18 19:23:54,255 | INFO     | [payload] failed_post thread has finished
[2025-11-18 20:24:40] 2025-11-18 19:23:54,259 | INFO     | all payload control threads have been joined
[2025-11-18 20:24:40] 2025-11-18 19:23:54,562 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-18 20:24:40] 2025-11-18 19:23:54,717 | INFO     | [job] control thread has finished
[2025-11-18 20:24:40] 2025-11-18 19:23:54,864 | INFO     | [data] control thread has finished
[2025-11-18 20:24:40] 2025-11-18 19:23:55,136 | INFO     | [payload] validate_post thread has finished
[2025-11-18 20:24:40] 2025-11-18 19:23:55,170 | INFO     | [payload] execute_payloads thread has finished
[2025-11-18 20:24:40] 2025-11-18 19:23:55,211 | INFO     | [job] validate thread has finished
[2025-11-18 20:24:40] 2025-11-18 19:23:55,265 | INFO     | [payload] control thread has finished
[2025-11-18 20:24:40] 2025-11-18 19:23:55,295 | INFO     | [job] create_data_payload thread has finished
[2025-11-18 20:24:40] 2025-11-18 19:23:55,587 | INFO     | [data] copytool_out thread has finished
[2025-11-18 20:24:40] 2025-11-18 19:23:55,883 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-18 20:24:40] 2025-11-18 19:23:59,891 | INFO     | [data] queue_monitor thread has finished
[2025-11-18 20:24:40] 2025-11-18 19:24:22,880 | INFO     | PID=200871 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-18 20:24:40] 2025-11-18 19:24:22,881 | INFO     | found 0 job(s) in 20 queues
[2025-11-18 20:24:40] 2025-11-18 19:24:22,881 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-18 20:24:40] 2025-11-18 19:24:22,881 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-18 20:24:40] 2025-11-18 19:24:34,019 | INFO     | [monitor] cgroup control has ended
[2025-11-18 20:24:40] 2025-11-18 19:24:35,773 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139694598358848)>', '<ExcThread(monitor, started 139694239098624)>']
[2025-11-18 20:24:40] 2025-11-18 19:24:35,950 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-18 20:24:40] 2025-11-18 19:24:35,950 | INFO     | [monitor] control thread has ended
[2025-11-18 20:24:40] 2025-11-18 19:24:40,783 | INFO     | all workflow threads have been joined
[2025-11-18 20:24:40] 2025-11-18 19:24:40,784 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-18 20:24:40] 2025-11-18 19:24:40,784 | INFO     | traces error code: 0
[2025-11-18 20:24:40] 2025-11-18 19:24:40,785 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-18 20:24:40] 2025-11-18 19:24:40,830 [wrapper] ==== pilot stdout END ====
[2025-11-18 20:24:40] 2025-11-18 19:24:40,833 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-18 20:24:40] 2025-11-18 19:24:40,836 [wrapper] pilotpid: 200871
[2025-11-18 20:24:40] 2025-11-18 19:24:40,839 [wrapper] Pilot exit status: 0
[2025-11-18 20:24:40] 2025-11-18 19:24:40,846 [wrapper] pandaids: 6891570939
[2025-11-18 20:24:40] 2025-11-18 19:24:40,863 [wrapper] cleanup supervisor_pilot  200877 200872
[2025-11-18 20:24:40] 2025-11-18 19:24:40,865 [wrapper] Test setup, not cleaning
[2025-11-18 20:24:40] 2025-11-18 19:24:40,868 [wrapper] apfmon messages muted
[2025-11-18 20:24:40] 2025-11-18 19:24:40,871 [wrapper] ==== wrapper stdout END ====
[2025-11-18 20:24:40] 2025-11-18 19:24:40,873 [wrapper] ==== wrapper stderr END ====
[2025-11-18 20:24:40]  *** Error codes and diagnostics ***
[2025-11-18 20:24:40]     "exeErrorCode": 65,
[2025-11-18 20:24:40]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-18 20:24:40]     "pilotErrorCode": 1305,
[2025-11-18 20:24:40]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-18 20:24:40]  *** Listing of results directory ***
[2025-11-18 20:24:40] total 404024
[2025-11-18 20:24:40] -rw-r--r-- 1 boinc boinc    576529 Nov 18 16:15 pilot3.tar.gz
[2025-11-18 20:24:40] -rw-r--r-- 1 boinc boinc      5112 Nov 18 16:39 queuedata.json
[2025-11-18 20:24:40] -rwx------ 1 boinc boinc     36292 Nov 18 16:42 runpilot2-wrapper.sh
[2025-11-18 20:24:40] -rw-r--r-- 1 boinc boinc       100 Nov 18 20:20 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-18 20:24:40] -rwxr-xr-x 1 boinc boinc      7986 Nov 18 20:20 run_atlas
[2025-11-18 20:24:40] -rw-r--r-- 1 boinc boinc       105 Nov 18 20:20 job.xml
[2025-11-18 20:24:40] -rw-r--r-- 2 boinc boinc 409510739 Nov 18 20:20 EVNT.47493065._000257.pool.root.1
[2025-11-18 20:24:40] -rw-r--r-- 2 boinc boinc    590098 Nov 18 20:20 input.tar.gz
[2025-11-18 20:24:40] -rw-r--r-- 2 boinc boinc     15120 Nov 18 20:20 start_atlas.sh
[2025-11-18 20:24:40] drwxrwx--x 2 boinc boinc      4096 Nov 18 20:20 shared
[2025-11-18 20:24:40] -rw-r--r-- 1 boinc boinc         0 Nov 18 20:20 boinc_setup_complete
[2025-11-18 20:24:40] -rw-r--r-- 1 boinc boinc      6193 Nov 18 20:20 init_data.xml
[2025-11-18 20:24:40] -rw-r--r-- 1 boinc boinc         0 Nov 18 20:20 boinc_lockfile
[2025-11-18 20:24:40] -rw-r--r-- 1 boinc boinc      2773 Nov 18 20:20 pandaJob.out
[2025-11-18 20:24:40] -rw------- 1 boinc boinc    992790 Nov 18 20:20 agis_schedconf.cvmfs.json
[2025-11-18 20:24:40] -rw------- 1 boinc boinc   1525063 Nov 18 20:20 agis_ddmendpoints.agis.ALL.json
[2025-11-18 20:24:40] drwx------ 5 boinc boinc      4096 Nov 18 20:20 pilot3
[2025-11-18 20:24:40] -rw-r--r-- 1 boinc boinc       523 Nov 18 20:21 boinc_task_state.xml
[2025-11-18 20:24:40] -rw------- 1 boinc boinc       958 Nov 18 20:21 memory_monitor_summary.json
[2025-11-18 20:24:40] -rw------- 1 boinc boinc     55866 Nov 18 20:21 log.47493068._002562.job.log.tgz.1
[2025-11-18 20:24:40] -rw------- 1 boinc boinc        95 Nov 18 20:23 pilot_heartbeat.json
[2025-11-18 20:24:40] -rw------- 1 boinc boinc      8401 Nov 18 20:23 heartbeat.json
[2025-11-18 20:24:40] -rw-r--r-- 1 boinc boinc      8192 Nov 18 20:24 boinc_mmap_file
[2025-11-18 20:24:40] -rw-r--r-- 1 boinc boinc        23 Nov 18 20:24 wrapper_checkpoint.txt
[2025-11-18 20:24:40] -rw------- 1 boinc boinc      4751 Nov 18 20:24 pilotlog.txt
[2025-11-18 20:24:40] -rw------- 1 boinc boinc     93615 Nov 18 20:24 log.47493068._002562.job.log.1
[2025-11-18 20:24:40] -rw------- 1 boinc boinc       186 Nov 18 20:24 output.list
[2025-11-18 20:24:40] -rw-r--r-- 1 boinc boinc       620 Nov 18 20:24 runtime_log
[2025-11-18 20:24:40] -rw------- 1 boinc boinc    174080 Nov 18 20:24 result.tar.gz
[2025-11-18 20:24:40] -rw-r--r-- 1 boinc boinc      8624 Nov 18 20:24 runtime_log.err
[2025-11-18 20:24:40] -rw------- 1 boinc boinc       649 Nov 18 20:24 kbRMDmZ1cf8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm6dFKDm5fpNDn.diag
[2025-11-18 20:24:40] -rw-r--r-- 1 boinc boinc      8121 Nov 18 20:24 stderr.txt
[2025-11-18 20:24:40] No HITS result produced
[2025-11-18 20:24:40]  *** Contents of shared directory: ***
[2025-11-18 20:24:40] total 400688
[2025-11-18 20:24:40] -rw-r--r-- 2 boinc boinc 409510739 Nov 18 20:20 ATLAS.root_0
[2025-11-18 20:24:40] -rw-r--r-- 2 boinc boinc    590098 Nov 18 20:20 input.tar.gz
[2025-11-18 20:24:40] -rw-r--r-- 2 boinc boinc     15120 Nov 18 20:20 start_atlas.sh
[2025-11-18 20:24:40] -rw------- 1 boinc boinc    174080 Nov 18 20:24 result.tar.gz
20:24:42 (197146): run_atlas exited; CPU time 32.042941
20:24:42 (197146): called boinc_finish(0)

</stderr_txt>
]]>

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