Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
21:53:27 (25121): wrapper (7.7.26015): starting
21:53:27 (25121): wrapper: running run_atlas (--nthreads 8)
[2025-11-19 21:53:27] Arguments: --nthreads 8
[2025-11-19 21:53:27] Threads: 8
[2025-11-19 21:53:27] Checking for CVMFS
[2025-11-19 21:53:28] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-19 21:53:28] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-19 21:53:28] Running cvmfs_config stat atlas.cern.ch
[2025-11-19 21:53:29] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-19 21:53:29] 2.11.2.0 3687 275830 141664 153056 3 242 19889723 25165825 4620 130560 2 142126220 99.884 72989071 2751 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-19 21:53:29] CVMFS is ok
[2025-11-19 21:53:29] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-19 21:53:29] Checking for apptainer binary...
[2025-11-19 21:53:29] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-19 21:53:29] Running /usr/bin/apptainer --version
[2025-11-19 21:53:30] apptainer version 1.3.2-1.el7
[2025-11-19 21:53:30] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-19 21:53:46] cg-vwn214.simple-grid.lan
[2025-11-19 21:53:46] apptainer works
[2025-11-19 21:53:46] Set ATHENA_PROC_NUMBER=8
[2025-11-19 21:53:46] Set ATHENA_CORE_NUMBER=8
[2025-11-19 21:53:46] Starting ATLAS job with PandaID=6891558407
[2025-11-19 21:53:46] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/19 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-20 23:45:50]  *** The last 200 lines of the pilot log: ***
[2025-11-20 23:45:50] 2025-11-20 22:45:05,858 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-20 23:45:50] 2025-11-20 22:45:06,070 | INFO     | time since job start (92849s) is within the limit (172800.0s)
[2025-11-20 23:45:50] 2025-11-20 22:45:08,082 | INFO     | time since job start (92851s) is within the limit (172800.0s)
[2025-11-20 23:45:50] 2025-11-20 22:45:08,368 | INFO     | monitor loop #6223: job 0:6891558407 is in state 'finished'
[2025-11-20 23:45:50] 2025-11-20 22:45:08,368 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-20 23:45:50] 2025-11-20 22:45:10,096 | INFO     | time since job start (92853s) is within the limit (172800.0s)
[2025-11-20 23:45:50] 2025-11-20 22:45:10,873 | INFO     | monitor loop #6224: job 0:6891558407 is in state 'finished'
[2025-11-20 23:45:50] 2025-11-20 22:45:10,873 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-20 23:45:50] 2025-11-20 22:45:12,103 | INFO     | time since job start (92855s) is within the limit (172800.0s)
[2025-11-20 23:45:50] 2025-11-20 22:45:12,620 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-20 23:45:50] 2025-11-20 22:45:12,621 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-11-20 23:45:50] 2025-11-20 22:45:12,623 | INFO     | using path: /var/lib/boinc/slots/19/PanDA_Pilot-6891558407/memory_monitor_summary.json (trf name=prmon)
[2025-11-20 23:45:50] 2025-11-20 22:45:12,623 | INFO     | extracted standard info from prmon json
[2025-11-20 23:45:50] 2025-11-20 22:45:12,624 | INFO     | extracted standard memory fields from prmon json
[2025-11-20 23:45:50] 2025-11-20 22:45:12,624 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-20 23:45:50] 2025-11-20 22:45:12,667 | INFO     | fitting pss+swap vs Time
[2025-11-20 23:45:50] 2025-11-20 22:45:12,669 | INFO     | sum of square deviations: 1073978284878.5288
[2025-11-20 23:45:50] 2025-11-20 22:45:12,785 | INFO     | sum of deviations: 3456803672691.7104
[2025-11-20 23:45:50] 2025-11-20 22:45:12,786 | INFO     | mean x: 1763632476.2947786
[2025-11-20 23:45:50] 2025-11-20 22:45:12,786 | INFO     | mean y: 2863394.16655651
[2025-11-20 23:45:50] 2025-11-20 22:45:12,786 | INFO     | intersect: -5673723653.423244
[2025-11-20 23:45:50] 2025-11-20 22:45:12,788 | INFO     | chi2: 16.273442980814355
[2025-11-20 23:45:50] 2025-11-20 22:45:12,790 | INFO     | sum of square deviations: 1063366534550.1185
[2025-11-20 23:45:50] 2025-11-20 22:45:12,892 | INFO     | sum of deviations: 3954787326291.9673
[2025-11-20 23:45:50] 2025-11-20 22:45:12,892 | INFO     | mean x: 1763632323.7990716
[2025-11-20 23:45:50] 2025-11-20 22:45:12,892 | INFO     | mean y: 2870549.399204244
[2025-11-20 23:45:50] 2025-11-20 22:45:12,892 | INFO     | intersect: -6556289002.627007
[2025-11-20 23:45:50] 2025-11-20 22:45:12,894 | INFO     | chi2: 13.149202571315628
[2025-11-20 23:45:50] 2025-11-20 22:45:12,895 | INFO     | current chi2=13.149202571315628 (change=19.198398354804596 %)
[2025-11-20 23:45:50] 2025-11-20 22:45:12,895 | INFO     | right removable region: 1507
[2025-11-20 23:45:50] 2025-11-20 22:45:12,897 | INFO     | sum of square deviations: 1063365339560.1189
[2025-11-20 23:45:50] 2025-11-20 22:45:12,980 | INFO     | sum of deviations: 2844146349290.1733
[2025-11-20 23:45:50] 2025-11-20 22:45:12,980 | INFO     | mean x: 1763632628.7990716
[2025-11-20 23:45:50] 2025-11-20 22:45:12,980 | INFO     | mean y: 2872196.2645888594
[2025-11-20 23:45:50] 2025-11-20 22:45:12,980 | INFO     | intersect: -4714254755.3839245
[2025-11-20 23:45:50] 2025-11-20 22:45:12,982 | INFO     | chi2: 11.991329624073325
[2025-11-20 23:45:50] 2025-11-20 22:45:12,983 | INFO     | current chi2=11.991329624073325 (change=26.31350576389671 %)
[2025-11-20 23:45:50] 2025-11-20 22:45:12,985 | INFO     | sum of square deviations: 1052822626837.2592
[2025-11-20 23:45:50] 2025-11-20 22:45:13,052 | INFO     | sum of deviations: 2567332350737.3193
[2025-11-20 23:45:50] 2025-11-20 22:45:13,053 | INFO     | mean x: 1763632781.302728
[2025-11-20 23:45:50] 2025-11-20 22:45:13,053 | INFO     | mean y: 2876196.775116434
[2025-11-20 23:45:50] 2025-11-20 22:45:13,053 | INFO     | intersect: -4297783172.468495
[2025-11-20 23:45:50] 2025-11-20 22:45:13,055 | INFO     | chi2: 11.009036906941757
[2025-11-20 23:45:50] 2025-11-20 22:45:13,055 | INFO     | current chi2=11.009036906941757 (change=8.19169139641992 %)
[2025-11-20 23:45:50] 2025-11-20 22:45:13,055 | INFO     | left removable region: 20
[2025-11-20 23:45:50] 2025-11-20 22:45:13,057 | INFO     | sum of square deviations: 1019557002358.5491
[2025-11-20 23:45:50] 2025-11-20 22:45:13,129 | INFO     | sum of deviations: 2928840511153.057
[2025-11-20 23:45:50] 2025-11-20 22:45:13,134 | INFO     | mean x: 1763632903.3073301
[2025-11-20 23:45:50] 2025-11-20 22:45:13,134 | INFO     | mean y: 2888657.967047747
[2025-11-20 23:45:50] 2025-11-20 22:45:13,135 | INFO     | intersect: -5063428852.539803
[2025-11-20 23:45:50] 2025-11-20 22:45:13,137 | INFO     | chi2: 6.923623347420646
[2025-11-20 23:45:50] 2025-11-20 22:45:13,137 | INFO     | current memory leak: 2.87 B/s (using 1487 data points, chi2=6.92)
[2025-11-20 23:45:50] 2025-11-20 22:45:13,139 | INFO     | could have reported an average CPU frequency of 1999 MHz (51 samples)
[2025-11-20 23:45:50] 2025-11-20 22:45:13,140 | INFO     | ..............................
[2025-11-20 23:45:50] 2025-11-20 22:45:13,140 | INFO     | . Timing measurements:
[2025-11-20 23:45:50] 2025-11-20 22:45:13,140 | INFO     | . get job = 0 s
[2025-11-20 23:45:50] 2025-11-20 22:45:13,140 | INFO     | . initial setup = 11 s
[2025-11-20 23:45:50] 2025-11-20 22:45:13,140 | INFO     | . payload setup = 144 s
[2025-11-20 23:45:50] 2025-11-20 22:45:13,140 | INFO     | . stage-in = 0 s
[2025-11-20 23:45:50] 2025-11-20 22:45:13,140 | INFO     | . payload execution = 92401 s
[2025-11-20 23:45:50] 2025-11-20 22:45:13,140 | INFO     | . stage-out = 8 s
[2025-11-20 23:45:50] 2025-11-20 22:45:13,140 | INFO     | . log creation = 2 s
[2025-11-20 23:45:50] 2025-11-20 22:45:13,140 | INFO     | ..............................
[2025-11-20 23:45:50] 2025-11-20 22:45:13,269 | INFO     | 
[2025-11-20 23:45:50] 2025-11-20 22:45:13,270 | INFO     | job summary report
[2025-11-20 23:45:50] 2025-11-20 22:45:13,270 | INFO     | --------------------------------------------------
[2025-11-20 23:45:50] 2025-11-20 22:45:13,270 | INFO     | PanDA job id: 6891558407
[2025-11-20 23:45:50] 2025-11-20 22:45:13,270 | INFO     | task id: 47493068
[2025-11-20 23:45:50] 2025-11-20 22:45:13,270 | INFO     | errors: (none)
[2025-11-20 23:45:50] 2025-11-20 22:45:13,270 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-20 23:45:50] 2025-11-20 22:45:13,270 | INFO     | pilot state: finished 
[2025-11-20 23:45:50] 2025-11-20 22:45:13,270 | INFO     | transexitcode: 0
[2025-11-20 23:45:50] 2025-11-20 22:45:13,270 | INFO     | exeerrorcode: 0
[2025-11-20 23:45:50] 2025-11-20 22:45:13,271 | INFO     | exeerrordiag: 
[2025-11-20 23:45:50] 2025-11-20 22:45:13,271 | INFO     | exitcode: 0
[2025-11-20 23:45:50] 2025-11-20 22:45:13,271 | INFO     | exitmsg: OK
[2025-11-20 23:45:50] 2025-11-20 22:45:13,271 | INFO     | cpuconsumptiontime: 344451 s
[2025-11-20 23:45:50] 2025-11-20 22:45:13,271 | INFO     | nevents: 1000
[2025-11-20 23:45:50] 2025-11-20 22:45:13,271 | INFO     | neventsw: 0
[2025-11-20 23:45:50] 2025-11-20 22:45:13,271 | INFO     | pid: 3106
[2025-11-20 23:45:50] 2025-11-20 22:45:13,271 | INFO     | pgrp: 3106
[2025-11-20 23:45:50] 2025-11-20 22:45:13,271 | INFO     | corecount: 8
[2025-11-20 23:45:50] 2025-11-20 22:45:13,271 | INFO     | event service: False
[2025-11-20 23:45:50] 2025-11-20 22:45:13,271 | INFO     | sizes: {0: 2296970, 1: 2297225, 2: 2297225, 12: 2297253, 23: 2297281, 34: 2297309, 45: 2297465, 55: 2297493, 66: 2297521, 77: 2297549, 88: 2297605, 98: 2297913, 10
[2025-11-20 23:45:50] 2025-11-20 22:45:13,272 | INFO     | --------------------------------------------------
[2025-11-20 23:45:50] 2025-11-20 22:45:13,272 | INFO     | 
[2025-11-20 23:45:50] 2025-11-20 22:45:13,272 | INFO     | executing command: ls -lF /var/lib/boinc/slots/19
[2025-11-20 23:45:50] 2025-11-20 22:45:13,806 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-20 23:45:50] 2025-11-20 22:45:13,807 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-20 23:45:50] 2025-11-20 22:45:13,807 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-20 23:45:50] 2025-11-20 22:45:13,807 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-20 23:45:50] 2025-11-20 22:45:13,807 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-20 23:45:50] 2025-11-20 22:45:13,807 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-20 23:45:50] 2025-11-20 22:45:13,807 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-20 23:45:50] 2025-11-20 22:45:13,807 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-20 23:45:50] 2025-11-20 22:45:13,807 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-20 23:45:50] 2025-11-20 22:45:13,808 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-20 23:45:50] 2025-11-20 22:45:13,808 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-20 23:45:50] 2025-11-20 22:45:13,808 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-20 23:45:50] 2025-11-20 22:45:13,808 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-20 23:45:50] 2025-11-20 22:45:13,808 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-20 23:45:50] 2025-11-20 22:45:13,808 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-20 23:45:50] 2025-11-20 22:45:13,808 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-20 23:45:50] 2025-11-20 22:45:13,808 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-20 23:45:50] 2025-11-20 22:45:13,808 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-20 23:45:50] 2025-11-20 22:45:13,808 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-20 23:45:50] 2025-11-20 22:45:13,809 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-20 23:45:50] 2025-11-20 22:45:13,809 | INFO     | job 6891558407 has completed (purged errors)
[2025-11-20 23:45:50] 2025-11-20 22:45:13,809 | INFO     | overall cleanup function is called
[2025-11-20 23:45:50] 2025-11-20 22:45:14,834 | INFO     | --- collectZombieJob: --- 10, [3106]
[2025-11-20 23:45:50] 2025-11-20 22:45:14,834 | INFO     | zombie collector waiting for pid 3106
[2025-11-20 23:45:50] 2025-11-20 22:45:14,835 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-20 23:45:50] 2025-11-20 22:45:14,835 | INFO     | collected zombie processes
[2025-11-20 23:45:50] 2025-11-20 22:45:14,835 | INFO     | will attempt to kill all subprocesses of pid=3106
[2025-11-20 23:45:50] 2025-11-20 22:45:14,957 | INFO     | process IDs to be killed: [3106] (in reverse order)
[2025-11-20 23:45:50] 2025-11-20 22:45:15,744 | WARNING  | found no corresponding commands to process id(s)
[2025-11-20 23:45:50] 2025-11-20 22:45:15,745 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-20 23:45:50] 2025-11-20 22:45:15,748 | INFO     | did not find any defunct processes belonging to 3106
[2025-11-20 23:45:50] 2025-11-20 22:45:15,752 | INFO     | did not find any defunct processes belonging to 3106
[2025-11-20 23:45:50] 2025-11-20 22:45:15,791 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-20 23:45:50] 2025-11-20 22:45:15,791 | INFO     | ready for new job
[2025-11-20 23:45:50] 2025-11-20 22:45:15,792 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-20 23:45:50] 2025-11-20 22:45:15,799 | INFO     | ***************************************
[2025-11-20 23:45:50] 2025-11-20 22:45:15,799 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-20 23:45:50] 2025-11-20 22:45:15,799 | INFO     | ***************************************
[2025-11-20 23:45:50] 2025-11-20 22:45:15,799 | INFO     | 
[2025-11-20 23:45:50] 2025-11-20 22:45:15,800 | INFO     | pilot is running in a VM
[2025-11-20 23:45:50] 2025-11-20 22:45:15,800 | INFO     | architecture information:
[2025-11-20 23:45:50] 2025-11-20 22:45:15,811 | INFO     | executing command: cat /etc/os-release
[2025-11-20 23:45:50] 2025-11-20 22:45:16,072 | INFO     | cat /etc/os-release:
[2025-11-20 23:45:50] NAME="CentOS Linux"
[2025-11-20 23:45:50] VERSION="7 (Core)"
[2025-11-20 23:45:50] ID="centos"
[2025-11-20 23:45:50] ID_LIKE="rhel fedora"
[2025-11-20 23:45:50] VERSION_ID="7"
[2025-11-20 23:45:50] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-20 23:45:50] ANSI_COLOR="0;31"
[2025-11-20 23:45:50] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-20 23:45:50] HOME_URL="https://www.centos.org/"
[2025-11-20 23:45:50] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-20 23:45:50] 
[2025-11-20 23:45:50] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-20 23:45:50] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-20 23:45:50] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-20 23:45:50] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-20 23:45:50] 
[2025-11-20 23:45:50] 2025-11-20 22:45:16,073 | INFO     | ***************************************
[2025-11-20 23:45:50] 2025-11-20 22:45:16,578 | INFO     | executing command: df -mP /var/lib/boinc/slots/19
[2025-11-20 23:45:50] 2025-11-20 22:45:16,847 | INFO     | sufficient remaining disk space (493923336192 B)
[2025-11-20 23:45:50] 2025-11-20 22:45:16,848 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-20 23:45:50] 2025-11-20 22:45:16,848 | INFO     | current server update state: UPDATING_FINAL
[2025-11-20 23:45:50] 2025-11-20 22:45:16,848 | INFO     | update_server=False
[2025-11-20 23:45:50] 2025-11-20 22:45:16,848 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-20 23:45:50] 2025-11-20 22:45:16,849 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-20 23:45:50] 2025-11-20 22:45:16,909 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-20 23:45:50] 2025-11-20 22:45:16,909 | INFO     | aborting loop
[2025-11-20 23:45:50] 2025-11-20 22:45:17,010 | INFO     | all job control threads have been joined
[2025-11-20 23:45:50] 2025-11-20 22:45:17,588 | INFO     | all data control threads have been joined
[2025-11-20 23:45:50] 2025-11-20 22:45:17,609 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-20 23:45:50] 2025-11-20 22:45:17,855 | INFO     | [job] retrieve thread has finished
[2025-11-20 23:45:50] 2025-11-20 22:45:17,914 | INFO     | [job] job monitor thread has finished
[2025-11-20 23:45:50] 2025-11-20 22:45:17,990 | INFO     | all payload control threads have been joined
[2025-11-20 23:45:50] 2025-11-20 22:45:18,016 | INFO     | [job] control thread has finished
[2025-11-20 23:45:50] 2025-11-20 22:45:18,107 | INFO     | [payload] validate_post thread has finished
[2025-11-20 23:45:50] 2025-11-20 22:45:18,116 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-20 23:45:50] 2025-11-20 22:45:18,213 | INFO     | [payload] validate_pre thread has finished
[2025-11-20 23:45:50] 2025-11-20 22:45:18,286 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-20 23:45:50] 2025-11-20 22:45:18,339 | INFO     | [payload] execute_payloads thread has finished
[2025-11-20 23:45:50] 2025-11-20 22:45:18,594 | INFO     | [data] control thread has finished
[2025-11-20 23:45:50] 2025-11-20 22:45:18,637 | INFO     | [job] create_data_payload thread has finished
[2025-11-20 23:45:50] 2025-11-20 22:45:18,856 | INFO     | [data] copytool_out thread has finished
[2025-11-20 23:45:50] 2025-11-20 22:45:18,900 | INFO     | [monitor] cgroup control has ended
[2025-11-20 23:45:50] 2025-11-20 22:45:18,955 | INFO     | [data] copytool_in thread has finished
[2025-11-20 23:45:50] 2025-11-20 22:45:18,980 | INFO     | [job] validate thread has finished
[2025-11-20 23:45:50] 2025-11-20 22:45:18,996 | INFO     | [payload] control thread has finished
[2025-11-20 23:45:50] 2025-11-20 22:45:19,104 | INFO     | [payload] failed_post thread has finished
[2025-11-20 23:45:50] 2025-11-20 22:45:19,292 | INFO     | [job] queue monitor thread has finished
[2025-11-20 23:45:50] 2025-11-20 22:45:21,618 | INFO     | [data] queue_monitor thread has finished
[2025-11-20 23:45:50] 2025-11-20 22:45:21,932 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139802455148352)>', '<ExcThread(monitor, started 139801554564864)>']
[2025-11-20 23:45:50] 2025-11-20 22:45:26,958 | INFO     | all workflow threads have been joined
[2025-11-20 23:45:50] 2025-11-20 22:45:26,958 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-20 23:45:50] 2025-11-20 22:45:26,958 | INFO     | traces error code: 0
[2025-11-20 23:45:50] 2025-11-20 22:45:26,959 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-20 23:45:50] 2025-11-20 22:45:45,348 | INFO     | PID=28907 has CPU usage=2.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-20 23:45:50] 2025-11-20 22:45:45,348 | INFO     | .. there are 9 such processes running
[2025-11-20 23:45:50] 2025-11-20 22:45:45,349 | INFO     | found 0 job(s) in 20 queues
[2025-11-20 23:45:50] 2025-11-20 22:45:45,349 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-20 23:45:50] 2025-11-20 22:45:45,349 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-20 23:45:50] 2025-11-20 22:45:45,349 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-20 23:45:50] 2025-11-20 22:45:45,349 | INFO     | [monitor] control thread has ended
[2025-11-20 23:45:50] 2025-11-20 22:45:45,762 [wrapper] ==== pilot stdout END ====
[2025-11-20 23:45:50] 2025-11-20 22:45:45,879 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-20 23:45:50] 2025-11-20 22:45:45,995 [wrapper] pilotpid: 28907
[2025-11-20 23:45:50] 2025-11-20 22:45:46,090 [wrapper] Pilot exit status: 0
[2025-11-20 23:45:50] 2025-11-20 22:45:46,594 [wrapper] pandaids: 6891558407
[2025-11-20 23:45:50] 2025-11-20 22:45:47,525 [wrapper] cleanup supervisor_pilot  9406 28908
[2025-11-20 23:45:50] 2025-11-20 22:45:47,589 [wrapper] Test setup, not cleaning
[2025-11-20 23:45:50] 2025-11-20 22:45:47,662 [wrapper] apfmon messages muted
[2025-11-20 23:45:50] 2025-11-20 22:45:47,750 [wrapper] ==== wrapper stdout END ====
[2025-11-20 23:45:50] 2025-11-20 22:45:47,858 [wrapper] ==== wrapper stderr END ====
[2025-11-20 23:45:50]  *** Error codes and diagnostics ***
[2025-11-20 23:45:50]     "exeErrorCode": 0,
[2025-11-20 23:45:50]     "exeErrorDiag": "",
[2025-11-20 23:45:50]     "pilotErrorCode": 0,
[2025-11-20 23:45:50]     "pilotErrorDiag": "",
[2025-11-20 23:45:50]  *** Listing of results directory ***
[2025-11-20 23:45:50] total 1344764
[2025-11-20 23:45:50] -rw-r--r--. 1 boinc boinc    576529 Nov 18 16:15 pilot3.tar.gz
[2025-11-20 23:45:50] -rw-r--r--. 1 boinc boinc      5112 Nov 18 16:23 queuedata.json
[2025-11-20 23:45:50] -rwx------. 1 boinc boinc     36292 Nov 18 16:23 runpilot2-wrapper.sh
[2025-11-20 23:45:50] -rw-r--r--. 1 boinc boinc       100 Nov 19 21:53 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-20 23:45:50] -rwxr-xr-x. 1 boinc boinc      7986 Nov 19 21:53 run_atlas
[2025-11-20 23:45:50] -rw-r--r--. 1 boinc boinc       105 Nov 19 21:53 job.xml
[2025-11-20 23:45:50] -rw-r--r--. 1 boinc boinc      6390 Nov 19 21:53 init_data.xml
[2025-11-20 23:45:50] -rw-r--r--. 2 boinc boinc 410721527 Nov 19 21:53 EVNT.47493065._000059.pool.root.1
[2025-11-20 23:45:50] -rw-r--r--. 2 boinc boinc     15120 Nov 19 21:53 start_atlas.sh
[2025-11-20 23:45:50] drwxrwx--x. 2 boinc boinc        68 Nov 19 21:53 shared
[2025-11-20 23:45:50] -rw-r--r--. 2 boinc boinc    590094 Nov 19 21:53 input.tar.gz
[2025-11-20 23:45:50] -rw-r--r--. 1 boinc boinc         0 Nov 19 21:53 boinc_lockfile
[2025-11-20 23:45:50] -rw-r--r--. 1 boinc boinc      2771 Nov 19 21:53 pandaJob.out
[2025-11-20 23:45:50] -rw-------. 1 boinc boinc    989443 Nov 19 21:57 agis_schedconf.cvmfs.json
[2025-11-20 23:45:50] drwx------. 5 boinc boinc      4096 Nov 19 21:57 pilot3
[2025-11-20 23:45:50] -rw-r--r--. 1 boinc boinc       533 Nov 20 23:23 boinc_task_state.xml
[2025-11-20 23:45:50] -rw-------. 1 boinc boinc 932550804 Nov 20 23:42 HITS.47493068._000586.pool.root.1
[2025-11-20 23:45:50] -rw-------. 1 boinc boinc      1034 Nov 20 23:43 memory_monitor_summary.json
[2025-11-20 23:45:50] -rw-------. 1 boinc boinc   1526164 Nov 20 23:43 agis_ddmendpoints.agis.ALL.json
[2025-11-20 23:45:50] -rw-------. 1 boinc boinc   2581743 Nov 20 23:43 log.47493068._000586.job.log.tgz.1
[2025-11-20 23:45:50] -rw-------. 1 boinc boinc        95 Nov 20 23:45 pilot_heartbeat.json
[2025-11-20 23:45:50] -rw-------. 1 boinc boinc      8625 Nov 20 23:45 heartbeat.json
[2025-11-20 23:45:50] -rw-r--r--. 1 boinc boinc      8192 Nov 20 23:45 boinc_mmap_file
[2025-11-20 23:45:50] -rw-r--r--. 1 boinc boinc        29 Nov 20 23:45 wrapper_checkpoint.txt
[2025-11-20 23:45:50] -rw-------. 1 boinc boinc       820 Nov 20 23:45 pilotlog.txt
[2025-11-20 23:45:50] -rw-------. 1 boinc boinc  12351005 Nov 20 23:45 log.47493068._000586.job.log.1
[2025-11-20 23:45:50] -rw-------. 1 boinc boinc       353 Nov 20 23:45 output.list
[2025-11-20 23:45:50] -rw-r--r--. 1 boinc boinc       620 Nov 20 23:45 runtime_log
[2025-11-20 23:45:50] -rw-------. 1 boinc boinc  14950400 Nov 20 23:45 result.tar.gz
[2025-11-20 23:45:50] -rw-------. 1 boinc boinc       662 Nov 20 23:45 VXTMDmVjcf8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmgKFKDmFAv3an.diag
[2025-11-20 23:45:50] -rw-r--r--. 1 boinc boinc      8717 Nov 20 23:45 runtime_log.err
[2025-11-20 23:45:50] -rw-r--r--. 1 boinc boinc     21229 Nov 20 23:45 stderr.txt
[2025-11-20 23:45:50] HITS file was successfully produced:
[2025-11-20 23:45:50] -rw-------. 1 boinc boinc 932550804 Nov 20 23:42 shared/HITS.pool.root.1
[2025-11-20 23:45:50]  *** Contents of shared directory: ***
[2025-11-20 23:45:50] total 1326988
[2025-11-20 23:45:50] -rw-r--r--. 2 boinc boinc 410721527 Nov 19 21:53 ATLAS.root_0
[2025-11-20 23:45:50] -rw-r--r--. 2 boinc boinc     15120 Nov 19 21:53 start_atlas.sh
[2025-11-20 23:45:50] -rw-r--r--. 2 boinc boinc    590094 Nov 19 21:53 input.tar.gz
[2025-11-20 23:45:50] -rw-------. 1 boinc boinc 932550804 Nov 20 23:42 HITS.pool.root.1
[2025-11-20 23:45:50] -rw-------. 1 boinc boinc  14950400 Nov 20 23:45 result.tar.gz
23:45:52 (25121): run_atlas exited; CPU time 345027.382801
23:45:52 (25121): called boinc_finish(0)

</stderr_txt>
]]>

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