Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:04:50 (1160729): wrapper (7.7.26015): starting
00:04:50 (1160729): wrapper: running run_atlas (--nthreads 12)
[2025-11-19 00:04:50] Arguments: --nthreads 12
[2025-11-19 00:04:50] Threads: 12
[2025-11-19 00:04:50] Checking for CVMFS
[2025-11-19 00:04:51] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-19 00:04:52] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-19 00:04:52] Running cvmfs_config stat atlas.cern.ch
[2025-11-19 00:04:53] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-19 00:04:53] 2.13.2.0 37103 23188 192552 153031 3 57 40137180 40960000 15260 16776704 0 29767268 99.626 27763889 21187 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-19 00:04:53] CVMFS is ok
[2025-11-19 00:04:53] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-19 00:04:53] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-19 00:04:53] Further information can be found at the LHC@home message board.
[2025-11-19 00:04:53] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-19 00:04:53] Checking for apptainer binary...
[2025-11-19 00:04:53] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-19 00:04:53] Running /usr/bin/apptainer --version
[2025-11-19 00:04:54] apptainer version 1.4.4-1.el9
[2025-11-19 00:04:54] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-19 00:04:55] c-211-9.aglt2.org
[2025-11-19 00:04:55] apptainer works
[2025-11-19 00:04:56] Set ATHENA_PROC_NUMBER=12
[2025-11-19 00:04:56] Set ATHENA_CORE_NUMBER=12
[2025-11-19 00:04:56] Starting ATLAS job with PandaID=6891589177
[2025-11-19 00:04:56] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-20 14:32:31]  *** The last 200 lines of the pilot log: ***
[2025-11-20 14:32:31] 2025-11-20 19:31:06,065 | INFO     | monitor loop #7091: job 0:6891589177 is in state 'finished'
[2025-11-20 14:32:31] 2025-11-20 19:31:06,066 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-20 14:32:31] 2025-11-20 19:31:06,767 | INFO     | time since job start (138266s) is within the limit (172800.0s)
[2025-11-20 14:32:31] 2025-11-20 19:31:08,585 | INFO     | monitor loop #7092: job 0:6891589177 is in state 'finished'
[2025-11-20 14:32:31] 2025-11-20 19:31:08,586 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-20 14:32:31] 2025-11-20 19:31:08,792 | INFO     | time since job start (138268s) is within the limit (172800.0s)
[2025-11-20 14:32:31] 2025-11-20 19:31:09,850 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-20 14:32:31] 2025-11-20 19:31:09,941 | INFO     | found 24 cores (12 cores per socket, 2 sockets) HT, CPU MHz: 2549.765833333334
[2025-11-20 14:32:31] 2025-11-20 19:31:10,080 | INFO     | using path: /tmp/boinchome/slots/3/PanDA_Pilot-6891589177/memory_monitor_summary.json (trf name=prmon)
[2025-11-20 14:32:31] 2025-11-20 19:31:10,081 | INFO     | extracted standard info from prmon json
[2025-11-20 14:32:31] 2025-11-20 19:31:10,081 | INFO     | extracted standard memory fields from prmon json
[2025-11-20 14:32:31] 2025-11-20 19:31:10,081 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-20 14:32:31] 2025-11-20 19:31:10,669 | INFO     | fitting pss+swap vs Time
[2025-11-20 14:32:31] 2025-11-20 19:31:10,703 | INFO     | sum of square deviations: 3593481907147.1616
[2025-11-20 14:32:31] 2025-11-20 19:31:10,830 | INFO     | time since job start (138270s) is within the limit (172800.0s)
[2025-11-20 14:32:31] 2025-11-20 19:31:11,181 | INFO     | monitor loop #7093: job 0:6891589177 is in state 'finished'
[2025-11-20 14:32:31] 2025-11-20 19:31:11,182 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-20 14:32:31] 2025-11-20 19:31:11,783 | INFO     | sum of deviations: 13690374138394.887
[2025-11-20 14:32:31] 2025-11-20 19:31:11,784 | INFO     | mean x: 1763597992.8890853
[2025-11-20 14:32:31] 2025-11-20 19:31:11,784 | INFO     | mean y: 3360511.8917366327
[2025-11-20 14:32:31] 2025-11-20 19:31:11,784 | INFO     | intersect: -6715559181.109265
[2025-11-20 14:32:31] 2025-11-20 19:31:11,788 | INFO     | chi2: 61.678343073341885
[2025-11-20 14:32:31] 2025-11-20 19:31:11,796 | INFO     | sum of square deviations: 3569720796503.701
[2025-11-20 14:32:31] 2025-11-20 19:31:12,871 | INFO     | time since job start (138272s) is within the limit (172800.0s)
[2025-11-20 14:32:31] 2025-11-20 19:31:13,192 | INFO     | sum of deviations: 14715414914590.729
[2025-11-20 14:32:31] 2025-11-20 19:31:13,192 | INFO     | mean x: 1763597840.408769
[2025-11-20 14:32:31] 2025-11-20 19:31:13,192 | INFO     | mean y: 3367089.0425155004
[2025-11-20 14:32:31] 2025-11-20 19:31:13,193 | INFO     | intersect: -7266689994.836283
[2025-11-20 14:32:31] 2025-11-20 19:31:13,207 | INFO     | chi2: 57.15370833066864
[2025-11-20 14:32:31] 2025-11-20 19:31:13,207 | INFO     | current chi2=57.15370833066864 (change=7.335856505245264 %)
[2025-11-20 14:32:31] 2025-11-20 19:31:13,207 | INFO     | right removable region: 2257
[2025-11-20 14:32:31] 2025-11-20 19:31:13,295 | INFO     | sum of square deviations: 3569708525743.7104
[2025-11-20 14:32:31] 2025-11-20 19:31:13,922 | INFO     | monitor loop #7094: job 0:6891589177 is in state 'finished'
[2025-11-20 14:32:31] 2025-11-20 19:31:13,923 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-20 14:32:31] 2025-11-20 19:31:15,141 | INFO     | time since job start (138275s) is within the limit (172800.0s)
[2025-11-20 14:32:31] 2025-11-20 19:31:15,183 | INFO     | sum of deviations: 12562590594883.3
[2025-11-20 14:32:31] 2025-11-20 19:31:15,183 | INFO     | mean x: 1763598145.408769
[2025-11-20 14:32:31] 2025-11-20 19:31:15,184 | INFO     | mean y: 3367747.0332152345
[2025-11-20 14:32:31] 2025-11-20 19:31:15,184 | INFO     | intersect: -6203122591.011961
[2025-11-20 14:32:31] 2025-11-20 19:31:15,205 | INFO     | chi2: 57.03063002358372
[2025-11-20 14:32:31] 2025-11-20 19:31:15,205 | INFO     | current chi2=57.03063002358372 (change=7.535405165199653 %)
[2025-11-20 14:32:31] 2025-11-20 19:31:15,205 | INFO     | left removable region: 10
[2025-11-20 14:32:31] 2025-11-20 19:31:15,246 | INFO     | sum of square deviations: 3517791172905.903
[2025-11-20 14:32:31] 2025-11-20 19:31:16,816 | INFO     | monitor loop #7095: job 0:6891589177 is in state 'finished'
[2025-11-20 14:32:31] 2025-11-20 19:31:16,817 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-20 14:32:31] 2025-11-20 19:31:17,009 | INFO     | sum of deviations: 12740385991554.256
[2025-11-20 14:32:31] 2025-11-20 19:31:17,010 | INFO     | mean x: 1763598114.952381
[2025-11-20 14:32:31] 2025-11-20 19:31:17,010 | INFO     | mean y: 3382198.731197152
[2025-11-20 14:32:31] 2025-11-20 19:31:17,010 | INFO     | intersect: -6383841946.785705
[2025-11-20 14:32:31] 2025-11-20 19:31:17,041 | INFO     | chi2: 47.96764895261519
[2025-11-20 14:32:31] 2025-11-20 19:31:17,042 | INFO     | current memory leak: 3.62 B/s (using 2247 data points, chi2=47.97)
[2025-11-20 14:32:31] 2025-11-20 19:31:17,087 | INFO     | could have reported an average CPU frequency of 2621 MHz (78 samples)
[2025-11-20 14:32:31] 2025-11-20 19:31:17,087 | INFO     | correcting setup and stagein times since remote i/o verification was done
[2025-11-20 14:32:31] 2025-11-20 19:31:17,088 | INFO     | ..............................
[2025-11-20 14:32:31] 2025-11-20 19:31:17,088 | INFO     | . Timing measurements:
[2025-11-20 14:32:31] 2025-11-20 19:31:17,088 | INFO     | . get job = 0 s
[2025-11-20 14:32:31] 2025-11-20 19:31:17,088 | INFO     | . initial setup = 8 s
[2025-11-20 14:32:31] 2025-11-20 19:31:17,088 | INFO     | . payload setup = 61 s
[2025-11-20 14:32:31] 2025-11-20 19:31:17,088 | INFO     | . stage-in = 1 s
[2025-11-20 14:32:31] 2025-11-20 19:31:17,088 | INFO     | . payload execution = 138020 s
[2025-11-20 14:32:31] 2025-11-20 19:31:17,088 | INFO     | . stage-out = 28 s
[2025-11-20 14:32:31] 2025-11-20 19:31:17,089 | INFO     | . log creation = 12 s
[2025-11-20 14:32:31] 2025-11-20 19:31:17,089 | INFO     | ..............................
[2025-11-20 14:32:31] 2025-11-20 19:31:17,231 | INFO     | time since job start (138277s) is within the limit (172800.0s)
[2025-11-20 14:32:31] 2025-11-20 19:31:17,875 | INFO     | 
[2025-11-20 14:32:31] 2025-11-20 19:31:17,875 | INFO     | job summary report
[2025-11-20 14:32:31] 2025-11-20 19:31:17,875 | INFO     | --------------------------------------------------
[2025-11-20 14:32:31] 2025-11-20 19:31:17,875 | INFO     | PanDA job id: 6891589177
[2025-11-20 14:32:31] 2025-11-20 19:31:17,875 | INFO     | task id: 47493068
[2025-11-20 14:32:31] 2025-11-20 19:31:17,876 | INFO     | errors: (none)
[2025-11-20 14:32:31] 2025-11-20 19:31:17,876 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-20 14:32:31] 2025-11-20 19:31:17,876 | INFO     | pilot state: finished 
[2025-11-20 14:32:31] 2025-11-20 19:31:17,876 | INFO     | transexitcode: 0
[2025-11-20 14:32:31] 2025-11-20 19:31:17,876 | INFO     | exeerrorcode: 0
[2025-11-20 14:32:31] 2025-11-20 19:31:17,876 | INFO     | exeerrordiag: 
[2025-11-20 14:32:31] 2025-11-20 19:31:17,876 | INFO     | exitcode: 0
[2025-11-20 14:32:31] 2025-11-20 19:31:17,877 | INFO     | exitmsg: OK
[2025-11-20 14:32:31] 2025-11-20 19:31:17,877 | INFO     | cpuconsumptiontime: 343602 s
[2025-11-20 14:32:31] 2025-11-20 19:31:17,877 | INFO     | nevents: 1000
[2025-11-20 14:32:31] 2025-11-20 19:31:17,877 | INFO     | neventsw: 0
[2025-11-20 14:32:31] 2025-11-20 19:31:17,877 | INFO     | pid: 1174699
[2025-11-20 14:32:31] 2025-11-20 19:31:17,877 | INFO     | pgrp: 1174699
[2025-11-20 14:32:31] 2025-11-20 19:31:17,877 | INFO     | corecount: 12
[2025-11-20 14:32:31] 2025-11-20 19:31:17,877 | INFO     | event service: False
[2025-11-20 14:32:31] 2025-11-20 19:31:17,878 | INFO     | sizes: {0: 2297023, 1: 2297222, 2: 2297222, 13: 2297250, 25: 2297306, 36: 2297334, 41: 2297752, 47: 2297780, 138086: 2384866, 138088: 2384865, 138117: 2395511, 138
[2025-11-20 14:32:31] 2025-11-20 19:31:17,878 | INFO     | --------------------------------------------------
[2025-11-20 14:32:31] 2025-11-20 19:31:17,878 | INFO     | 
[2025-11-20 14:32:31] 2025-11-20 19:31:17,878 | INFO     | executing command: ls -lF /tmp/boinchome/slots/3
[2025-11-20 14:32:31] 2025-11-20 19:31:18,073 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-20 14:32:31] 2025-11-20 19:31:18,073 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-20 14:32:31] 2025-11-20 19:31:18,073 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-20 14:32:31] 2025-11-20 19:31:18,074 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-20 14:32:31] 2025-11-20 19:31:18,074 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-20 14:32:31] 2025-11-20 19:31:18,074 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-20 14:32:31] 2025-11-20 19:31:18,074 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-20 14:32:31] 2025-11-20 19:31:18,074 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-20 14:32:31] 2025-11-20 19:31:18,074 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-20 14:32:31] 2025-11-20 19:31:18,074 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-20 14:32:31] 2025-11-20 19:31:18,075 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-20 14:32:31] 2025-11-20 19:31:18,075 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-20 14:32:31] 2025-11-20 19:31:18,075 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-20 14:32:31] 2025-11-20 19:31:18,075 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-20 14:32:31] 2025-11-20 19:31:18,075 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-20 14:32:31] 2025-11-20 19:31:18,075 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-20 14:32:31] 2025-11-20 19:31:18,075 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-20 14:32:31] 2025-11-20 19:31:18,076 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-20 14:32:31] 2025-11-20 19:31:18,076 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-20 14:32:31] 2025-11-20 19:31:18,076 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-20 14:32:31] 2025-11-20 19:31:18,117 | INFO     | job 6891589177 has completed (purged errors)
[2025-11-20 14:32:31] 2025-11-20 19:31:18,117 | INFO     | overall cleanup function is called
[2025-11-20 14:32:31] 2025-11-20 19:31:19,244 | INFO     | --- collectZombieJob: --- 10, [1174699]
[2025-11-20 14:32:31] 2025-11-20 19:31:19,244 | INFO     | zombie collector waiting for pid 1174699
[2025-11-20 14:32:31] 2025-11-20 19:31:19,245 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-20 14:32:31] 2025-11-20 19:31:19,245 | INFO     | collected zombie processes
[2025-11-20 14:32:31] 2025-11-20 19:31:19,245 | INFO     | will attempt to kill all subprocesses of pid=1174699
[2025-11-20 14:32:31] 2025-11-20 19:31:22,405 | INFO     | process IDs to be killed: [1174699] (in reverse order)
[2025-11-20 14:32:31] 2025-11-20 19:31:22,990 | WARNING  | found no corresponding commands to process id(s)
[2025-11-20 14:32:31] 2025-11-20 19:31:22,990 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-20 14:32:31] 2025-11-20 19:31:23,133 | INFO     | did not find any defunct processes belonging to 1174699
[2025-11-20 14:32:31] 2025-11-20 19:31:23,293 | INFO     | did not find any defunct processes belonging to 1174699
[2025-11-20 14:32:31] 2025-11-20 19:31:23,357 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-20 14:32:31] 2025-11-20 19:31:23,358 | INFO     | ready for new job
[2025-11-20 14:32:31] 2025-11-20 19:31:23,358 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-20 14:32:31] 2025-11-20 19:31:23,385 | INFO     | ***************************************
[2025-11-20 14:32:31] 2025-11-20 19:31:23,386 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-20 14:32:31] 2025-11-20 19:31:23,386 | INFO     | ***************************************
[2025-11-20 14:32:31] 2025-11-20 19:31:23,386 | INFO     | 
[2025-11-20 14:32:31] 2025-11-20 19:31:23,431 | INFO     | architecture information:
[2025-11-20 14:32:31] 2025-11-20 19:31:23,463 | INFO     | executing command: cat /etc/os-release
[2025-11-20 14:32:31] 2025-11-20 19:31:23,691 | INFO     | cat /etc/os-release:
[2025-11-20 14:32:31] NAME="CentOS Linux"
[2025-11-20 14:32:31] VERSION="7 (Core)"
[2025-11-20 14:32:31] ID="centos"
[2025-11-20 14:32:31] ID_LIKE="rhel fedora"
[2025-11-20 14:32:31] VERSION_ID="7"
[2025-11-20 14:32:31] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-20 14:32:31] ANSI_COLOR="0;31"
[2025-11-20 14:32:31] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-20 14:32:31] HOME_URL="https://www.centos.org/"
[2025-11-20 14:32:31] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-20 14:32:31] 
[2025-11-20 14:32:31] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-20 14:32:31] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-20 14:32:31] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-20 14:32:31] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-20 14:32:31] 
[2025-11-20 14:32:31] 2025-11-20 19:31:23,692 | INFO     | ***************************************
[2025-11-20 14:32:31] 2025-11-20 19:31:24,195 | INFO     | executing command: df -mP /tmp/boinchome/slots/3
[2025-11-20 14:32:31] 2025-11-20 19:31:24,679 | INFO     | sufficient remaining disk space (60682141696 B)
[2025-11-20 14:32:31] 2025-11-20 19:31:24,680 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-20 14:32:31] 2025-11-20 19:31:24,680 | INFO     | current server update state: UPDATING_FINAL
[2025-11-20 14:32:31] 2025-11-20 19:31:24,680 | INFO     | update_server=False
[2025-11-20 14:32:31] 2025-11-20 19:31:24,680 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-20 14:32:31] 2025-11-20 19:31:24,705 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-20 14:32:31] 2025-11-20 19:31:24,871 | INFO     | all job control threads have been joined
[2025-11-20 14:32:31] 2025-11-20 19:31:24,882 | INFO     | all payload control threads have been joined
[2025-11-20 14:32:31] 2025-11-20 19:31:24,950 | INFO     | all data control threads have been joined
[2025-11-20 14:32:31] 2025-11-20 19:31:25,347 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-20 14:32:31] 2025-11-20 19:31:25,517 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-20 14:32:31] 2025-11-20 19:31:25,518 | INFO     | aborting loop
[2025-11-20 14:32:31] 2025-11-20 19:31:25,686 | INFO     | [job] retrieve thread has finished
[2025-11-20 14:32:31] 2025-11-20 19:31:25,901 | INFO     | [job] control thread has finished
[2025-11-20 14:32:31] 2025-11-20 19:31:25,919 | INFO     | [payload] control thread has finished
[2025-11-20 14:32:31] 2025-11-20 19:31:25,956 | INFO     | [data] control thread has finished
[2025-11-20 14:32:31] 2025-11-20 19:31:26,523 | INFO     | [job] job monitor thread has finished
[2025-11-20 14:32:31] 2025-11-20 19:31:26,723 | INFO     | [payload] validate_post thread has finished
[2025-11-20 14:32:31] 2025-11-20 19:31:26,731 | INFO     | [payload] failed_post thread has finished
[2025-11-20 14:32:31] 2025-11-20 19:31:26,942 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-20 14:32:31] 2025-11-20 19:31:26,983 | INFO     | [data] copytool_in thread has finished
[2025-11-20 14:32:31] 2025-11-20 19:31:26,988 | INFO     | [job] validate thread has finished
[2025-11-20 14:32:31] 2025-11-20 19:31:27,011 | INFO     | [payload] validate_pre thread has finished
[2025-11-20 14:32:31] 2025-11-20 19:31:27,012 | INFO     | [job] create_data_payload thread has finished
[2025-11-20 14:32:31] 2025-11-20 19:31:27,023 | INFO     | [payload] execute_payloads thread has finished
[2025-11-20 14:32:31] 2025-11-20 19:31:27,088 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-20 14:32:31] 2025-11-20 19:31:27,384 | INFO     | [data] copytool_out thread has finished
[2025-11-20 14:32:31] 2025-11-20 19:31:27,980 | INFO     | [job] queue monitor thread has finished
[2025-11-20 14:32:31] 2025-11-20 19:31:28,714 | INFO     | [data] queue_monitor thread has finished
[2025-11-20 14:32:31] 2025-11-20 19:31:52,041 | INFO     | PID=1166472 has CPU usage=4.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-20 14:32:31] 2025-11-20 19:31:52,041 | INFO     | .. there are 16 such processes running
[2025-11-20 14:32:31] 2025-11-20 19:31:52,042 | INFO     | found 0 job(s) in 20 queues
[2025-11-20 14:32:31] 2025-11-20 19:31:52,042 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-20 14:32:31] 2025-11-20 19:31:52,043 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-20 14:32:31] 2025-11-20 19:32:20,059 | INFO     | [monitor] cgroup control has ended
[2025-11-20 14:32:31] 2025-11-20 19:32:20,486 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139806598244160)>', '<ExcThread(monitor, started 139806235399936)>']
[2025-11-20 14:32:31] 2025-11-20 19:32:21,274 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-20 14:32:31] 2025-11-20 19:32:21,274 | INFO     | [monitor] control thread has ended
[2025-11-20 14:32:31] 2025-11-20 19:32:25,511 | INFO     | all workflow threads have been joined
[2025-11-20 14:32:31] 2025-11-20 19:32:25,511 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-20 14:32:31] 2025-11-20 19:32:25,512 | INFO     | traces error code: 0
[2025-11-20 14:32:31] 2025-11-20 19:32:25,512 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-20 14:32:31] 2025-11-20 19:32:27,267 [wrapper] ==== pilot stdout END ====
[2025-11-20 14:32:31] 2025-11-20 19:32:27,325 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-20 14:32:31] 2025-11-20 19:32:27,379 [wrapper] pilotpid: 1166472
[2025-11-20 14:32:31] 2025-11-20 19:32:27,431 [wrapper] Pilot exit status: 0
[2025-11-20 14:32:31] 2025-11-20 19:32:27,621 [wrapper] pandaids: 6891589177
[2025-11-20 14:32:31] 2025-11-20 19:32:28,501 [wrapper] cleanup supervisor_pilot 1493806 1166473
[2025-11-20 14:32:31] 2025-11-20 19:32:28,553 [wrapper] Test setup, not cleaning
[2025-11-20 14:32:31] 2025-11-20 19:32:28,601 [wrapper] apfmon messages muted
[2025-11-20 14:32:31] 2025-11-20 19:32:28,671 [wrapper] ==== wrapper stdout END ====
[2025-11-20 14:32:31] 2025-11-20 19:32:28,728 [wrapper] ==== wrapper stderr END ====
[2025-11-20 14:32:31]  *** Error codes and diagnostics ***
[2025-11-20 14:32:31]     "exeErrorCode": 0,
[2025-11-20 14:32:31]     "exeErrorDiag": "",
[2025-11-20 14:32:31]     "pilotErrorCode": 0,
[2025-11-20 14:32:31]     "pilotErrorDiag": "",
[2025-11-20 14:32:31]  *** Listing of results directory ***
[2025-11-20 14:32:31] total 1342160
[2025-11-20 14:32:31] -rw-r--r--. 1 boincer umatlas    576529 Nov 18 12:24 pilot3.tar.gz
[2025-11-20 14:32:31] -rw-r--r--. 1 boincer umatlas      5112 Nov 18 12:40 queuedata.json
[2025-11-20 14:32:31] -rwx------. 1 boincer umatlas     36292 Nov 18 12:42 runpilot2-wrapper.sh
[2025-11-20 14:32:31] -rw-r--r--. 1 boincer umatlas       100 Nov 19 00:04 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-20 14:32:31] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 19 00:04 run_atlas
[2025-11-20 14:32:31] -rw-r--r--. 1 boincer umatlas       105 Nov 19 00:04 job.xml
[2025-11-20 14:32:31] -rw-r--r--. 2 boincer umatlas 409490262 Nov 19 00:04 EVNT.47493065._000524.pool.root.1
[2025-11-20 14:32:31] drwxrwx--x. 2 boincer umatlas      4096 Nov 19 00:04 shared
[2025-11-20 14:32:31] -rw-r--r--. 2 boincer umatlas    590102 Nov 19 00:04 input.tar.gz
[2025-11-20 14:32:31] -rw-r--r--. 2 boincer umatlas     15120 Nov 19 00:04 start_atlas.sh
[2025-11-20 14:32:31] -rw-r--r--. 1 boincer umatlas         0 Nov 19 00:04 boinc_lockfile
[2025-11-20 14:32:31] -rw-r--r--. 1 boincer umatlas      2770 Nov 19 00:04 pandaJob.out
[2025-11-20 14:32:31] -rw-------. 1 boincer umatlas    992806 Nov 19 00:06 agis_schedconf.cvmfs.json
[2025-11-20 14:32:31] drwx------. 5 boincer umatlas      4096 Nov 19 00:06 pilot3
[2025-11-20 14:32:31] -rw-r--r--. 1 boincer umatlas       533 Nov 20 13:05 boinc_task_state.xml
[2025-11-20 14:32:31] -rw-------. 1 boincer umatlas 922547653 Nov 20 14:26 HITS.47493068._005231.pool.root.1
[2025-11-20 14:32:31] -rw-r--r--. 1 boincer umatlas      6614 Nov 20 14:27 init_data.xml
[2025-11-20 14:32:31] -rw-------. 1 boincer umatlas      1081 Nov 20 14:29 memory_monitor_summary.json
[2025-11-20 14:32:31] -rw-------. 1 boincer umatlas   1526164 Nov 20 14:29 agis_ddmendpoints.agis.ALL.json
[2025-11-20 14:32:31] -rw-------. 1 boincer umatlas   3404133 Nov 20 14:30 log.47493068._005231.job.log.tgz.1
[2025-11-20 14:32:31] -rw-------. 1 boincer umatlas      8681 Nov 20 14:31 heartbeat.json
[2025-11-20 14:32:31] -rw-------. 1 boincer umatlas        95 Nov 20 14:31 pilot_heartbeat.json
[2025-11-20 14:32:31] -rw-------. 1 boincer umatlas      4824 Nov 20 14:32 pilotlog.txt
[2025-11-20 14:32:31] -rw-r--r--. 1 boincer umatlas      8192 Nov 20 14:32 boinc_mmap_file
[2025-11-20 14:32:31] -rw-r--r--. 1 boincer umatlas        29 Nov 20 14:32 wrapper_checkpoint.txt
[2025-11-20 14:32:31] -rw-------. 1 boincer umatlas  15798528 Nov 20 14:32 log.47493068._005231.job.log.1
[2025-11-20 14:32:31] -rw-------. 1 boincer umatlas       353 Nov 20 14:32 output.list
[2025-11-20 14:32:31] -rw-r--r--. 1 boincer umatlas       620 Nov 20 14:32 runtime_log
[2025-11-20 14:32:31] -rw-------. 1 boincer umatlas  19220480 Nov 20 14:32 result.tar.gz
[2025-11-20 14:32:31] -rw-r--r--. 1 boincer umatlas      8702 Nov 20 14:32 runtime_log.err
[2025-11-20 14:32:31] -rw-------. 1 boincer umatlas       668 Nov 20 14:32 PDsMDmYtef8n9Rq4apOajLDm4fhM0noT9bVo0NGKDm7bFKDm5emxxn.diag
[2025-11-20 14:32:31] -rw-r--r--. 1 boincer umatlas     21837 Nov 20 14:32 stderr.txt
[2025-11-20 14:32:31] HITS file was successfully produced:
[2025-11-20 14:32:31] -rw-------. 1 boincer umatlas 922547653 Nov 20 14:26 shared/HITS.pool.root.1
[2025-11-20 14:32:31]  *** Contents of shared directory: ***
[2025-11-20 14:32:31] total 1320196
[2025-11-20 14:32:31] -rw-r--r--. 2 boincer umatlas 409490262 Nov 19 00:04 ATLAS.root_0
[2025-11-20 14:32:31] -rw-r--r--. 2 boincer umatlas    590102 Nov 19 00:04 input.tar.gz
[2025-11-20 14:32:31] -rw-r--r--. 2 boincer umatlas     15120 Nov 19 00:04 start_atlas.sh
[2025-11-20 14:32:31] -rw-------. 1 boincer umatlas 922547653 Nov 20 14:26 HITS.pool.root.1
[2025-11-20 14:32:31] -rw-------. 1 boincer umatlas  19220480 Nov 20 14:32 result.tar.gz
14:32:32 (1160729): run_atlas exited; CPU time 346667.530146
14:32:32 (1160729): called boinc_finish(0)

</stderr_txt>
]]>

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