Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
22:13:04 (24376): wrapper (7.7.26015): starting
22:13:04 (24376): wrapper: running run_atlas (--nthreads 8)
[2025-11-19 22:13:04] Arguments: --nthreads 8
[2025-11-19 22:13:04] Threads: 8
[2025-11-19 22:13:04] Checking for CVMFS
[2025-11-19 22:13:05] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-19 22:13:06] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-19 22:13:06] Running cvmfs_config stat atlas.cern.ch
[2025-11-19 22:13:07] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-19 22:13:07] 2.11.2.0 12000 212975 138524 153056 1 85 15355298 25165824 4632 130560 2 103387424 99.908 40672252 3316 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-19 22:13:07] CVMFS is ok
[2025-11-19 22:13:07] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-19 22:13:07] Checking for apptainer binary...
[2025-11-19 22:13:07] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-19 22:13:07] Running /usr/bin/apptainer --version
[2025-11-19 22:13:07] apptainer version 1.3.2-1.el7
[2025-11-19 22:13:07] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-19 22:13:12] cg-vwn246.simple-grid.lan
[2025-11-19 22:13:12] apptainer works
[2025-11-19 22:13:12] Set ATHENA_PROC_NUMBER=8
[2025-11-19 22:13:12] Set ATHENA_CORE_NUMBER=8
[2025-11-19 22:13:12] Starting ATLAS job with PandaID=6891565254
[2025-11-19 22:13:12] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/8 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-20 23:56:11]  *** The last 200 lines of the pilot log: ***
[2025-11-20 23:56:11] 2025-11-20 22:55:24,312 | INFO     | time since job start (92287s) is within the limit (172800.0s)
[2025-11-20 23:56:11] 2025-11-20 22:55:26,318 | INFO     | time since job start (92289s) is within the limit (172800.0s)
[2025-11-20 23:56:11] 2025-11-20 22:55:26,591 | INFO     | monitor loop #6196: job 0:6891565254 is in state 'finished'
[2025-11-20 23:56:11] 2025-11-20 22:55:26,591 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-20 23:56:11] 2025-11-20 22:55:28,326 | INFO     | time since job start (92291s) is within the limit (172800.0s)
[2025-11-20 23:56:11] 2025-11-20 22:55:29,095 | INFO     | monitor loop #6197: job 0:6891565254 is in state 'finished'
[2025-11-20 23:56:11] 2025-11-20 22:55:29,095 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-20 23:56:11] 2025-11-20 22:55:29,472 | INFO     | PID=28143 has CPU usage=1.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-20 23:56:11] 2025-11-20 22:55:29,472 | INFO     | .. there are 9 such processes running
[2025-11-20 23:56:11] 2025-11-20 22:55:30,474 | INFO     | time since job start (92293s) is within the limit (172800.0s)
[2025-11-20 23:56:11] 2025-11-20 22:55:31,601 | INFO     | monitor loop #6198: job 0:6891565254 is in state 'finished'
[2025-11-20 23:56:11] 2025-11-20 22:55:31,601 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-20 23:56:11] 2025-11-20 22:55:32,482 | INFO     | time since job start (92295s) is within the limit (172800.0s)
[2025-11-20 23:56:11] 2025-11-20 22:55:34,106 | INFO     | monitor loop #6199: job 0:6891565254 is in state 'finished'
[2025-11-20 23:56:11] 2025-11-20 22:55:34,106 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-20 23:56:11] 2025-11-20 22:55:34,489 | INFO     | time since job start (92297s) is within the limit (172800.0s)
[2025-11-20 23:56:11] 2025-11-20 22:55:35,710 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-20 23:56:11] 2025-11-20 22:55:35,711 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-11-20 23:56:11] 2025-11-20 22:55:35,714 | INFO     | using path: /var/lib/boinc/slots/8/PanDA_Pilot-6891565254/memory_monitor_summary.json (trf name=prmon)
[2025-11-20 23:56:11] 2025-11-20 22:55:35,715 | INFO     | extracted standard info from prmon json
[2025-11-20 23:56:11] 2025-11-20 22:55:35,715 | INFO     | extracted standard memory fields from prmon json
[2025-11-20 23:56:11] 2025-11-20 22:55:35,715 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-20 23:56:11] 2025-11-20 22:55:35,743 | INFO     | fitting pss+swap vs Time
[2025-11-20 23:56:11] 2025-11-20 22:55:35,745 | INFO     | sum of square deviations: 1052821810680.6802
[2025-11-20 23:56:11] 2025-11-20 22:55:35,811 | INFO     | sum of deviations: 3695611878892.4795
[2025-11-20 23:56:11] 2025-11-20 22:55:35,812 | INFO     | mean x: 1763633372.288756
[2025-11-20 23:56:11] 2025-11-20 22:55:35,812 | INFO     | mean y: 2853277.614105123
[2025-11-20 23:56:11] 2025-11-20 22:55:35,812 | INFO     | intersect: -6187847156.705014
[2025-11-20 23:56:11] 2025-11-20 22:55:35,814 | INFO     | chi2: 20.488712725774434
[2025-11-20 23:56:11] 2025-11-20 22:55:35,816 | INFO     | sum of square deviations: 1042350102779.8468
[2025-11-20 23:56:11] 2025-11-20 22:55:35,882 | INFO     | sum of deviations: 4195181752631.012
[2025-11-20 23:56:11] 2025-11-20 22:55:35,883 | INFO     | mean x: 1763633219.7930574
[2025-11-20 23:56:11] 2025-11-20 22:55:35,883 | INFO     | mean y: 2860552.1935914555
[2025-11-20 23:56:11] 2025-11-20 22:55:35,883 | INFO     | intersect: -7095293784.125783
[2025-11-20 23:56:11] 2025-11-20 22:55:35,885 | INFO     | chi2: 17.29162293800667
[2025-11-20 23:56:11] 2025-11-20 22:55:35,885 | INFO     | current chi2=17.29162293800667 (change=15.604151566564163 %)
[2025-11-20 23:56:11] 2025-11-20 22:55:35,885 | INFO     | right removable region: 1497
[2025-11-20 23:56:11] 2025-11-20 22:55:35,887 | INFO     | sum of square deviations: 1042348921209.8478
[2025-11-20 23:56:11] 2025-11-20 22:55:35,948 | INFO     | sum of deviations: 3069680313006.971
[2025-11-20 23:56:11] 2025-11-20 22:55:35,948 | INFO     | mean x: 1763633524.7930574
[2025-11-20 23:56:11] 2025-11-20 22:55:35,948 | INFO     | mean y: 2862391.516021362
[2025-11-20 23:56:11] 2025-11-20 22:55:35,949 | INFO     | intersect: -5190975295.899232
[2025-11-20 23:56:11] 2025-11-20 22:55:35,950 | INFO     | chi2: 15.914348448092273
[2025-11-20 23:56:11] 2025-11-20 22:55:35,950 | INFO     | current chi2=15.914348448092273 (change=22.326264899637607 %)
[2025-11-20 23:56:11] 2025-11-20 22:55:35,951 | INFO     | left removable region: 10
[2025-11-20 23:56:11] 2025-11-20 22:55:35,953 | INFO     | sum of square deviations: 1019554913361.8184
[2025-11-20 23:56:11] 2025-11-20 22:55:36,012 | INFO     | sum of deviations: 3156085044690.555
[2025-11-20 23:56:11] 2025-11-20 22:55:36,012 | INFO     | mean x: 1763633494.3026228
[2025-11-20 23:56:11] 2025-11-20 22:55:36,012 | INFO     | mean y: 2879121.523201076
[2025-11-20 23:56:11] 2025-11-20 22:55:36,012 | INFO     | intersect: -5456539711.867811
[2025-11-20 23:56:11] 2025-11-20 22:55:36,014 | INFO     | chi2: 8.784025988796508
[2025-11-20 23:56:11] 2025-11-20 22:55:36,014 | INFO     | current memory leak: 3.10 B/s (using 1487 data points, chi2=8.78)
[2025-11-20 23:56:11] 2025-11-20 22:55:36,016 | INFO     | could have reported an average CPU frequency of 1999 MHz (51 samples)
[2025-11-20 23:56:11] 2025-11-20 22:55:36,017 | INFO     | ..............................
[2025-11-20 23:56:11] 2025-11-20 22:55:36,017 | INFO     | . Timing measurements:
[2025-11-20 23:56:11] 2025-11-20 22:55:36,017 | INFO     | . get job = 0 s
[2025-11-20 23:56:11] 2025-11-20 22:55:36,017 | INFO     | . initial setup = 7 s
[2025-11-20 23:56:11] 2025-11-20 22:55:36,017 | INFO     | . payload setup = 161 s
[2025-11-20 23:56:11] 2025-11-20 22:55:36,017 | INFO     | . stage-in = 0 s
[2025-11-20 23:56:11] 2025-11-20 22:55:36,017 | INFO     | . payload execution = 91830 s
[2025-11-20 23:56:11] 2025-11-20 22:55:36,017 | INFO     | . stage-out = 9 s
[2025-11-20 23:56:11] 2025-11-20 22:55:36,017 | INFO     | . log creation = 2 s
[2025-11-20 23:56:11] 2025-11-20 22:55:36,017 | INFO     | ..............................
[2025-11-20 23:56:11] 2025-11-20 22:55:36,141 | INFO     | 
[2025-11-20 23:56:11] 2025-11-20 22:55:36,141 | INFO     | job summary report
[2025-11-20 23:56:11] 2025-11-20 22:55:36,142 | INFO     | --------------------------------------------------
[2025-11-20 23:56:11] 2025-11-20 22:55:36,142 | INFO     | PanDA job id: 6891565254
[2025-11-20 23:56:11] 2025-11-20 22:55:36,142 | INFO     | task id: 47493068
[2025-11-20 23:56:11] 2025-11-20 22:55:36,142 | INFO     | errors: (none)
[2025-11-20 23:56:11] 2025-11-20 22:55:36,142 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-20 23:56:11] 2025-11-20 22:55:36,142 | INFO     | pilot state: finished 
[2025-11-20 23:56:11] 2025-11-20 22:55:36,142 | INFO     | transexitcode: 0
[2025-11-20 23:56:11] 2025-11-20 22:55:36,142 | INFO     | exeerrorcode: 0
[2025-11-20 23:56:11] 2025-11-20 22:55:36,142 | INFO     | exeerrordiag: 
[2025-11-20 23:56:11] 2025-11-20 22:55:36,142 | INFO     | exitcode: 0
[2025-11-20 23:56:11] 2025-11-20 22:55:36,142 | INFO     | exitmsg: OK
[2025-11-20 23:56:11] 2025-11-20 22:55:36,142 | INFO     | cpuconsumptiontime: 342433 s
[2025-11-20 23:56:11] 2025-11-20 22:55:36,142 | INFO     | nevents: 1000
[2025-11-20 23:56:11] 2025-11-20 22:55:36,143 | INFO     | neventsw: 0
[2025-11-20 23:56:11] 2025-11-20 22:55:36,143 | INFO     | pid: 2331
[2025-11-20 23:56:11] 2025-11-20 22:55:36,143 | INFO     | pgrp: 2331
[2025-11-20 23:56:11] 2025-11-20 22:55:36,143 | INFO     | corecount: 8
[2025-11-20 23:56:11] 2025-11-20 22:55:36,143 | INFO     | event service: False
[2025-11-20 23:56:11] 2025-11-20 22:55:36,143 | INFO     | sizes: {0: 2296973, 1: 2297228, 2: 2297228, 12: 2297256, 23: 2297284, 34: 2297312, 45: 2297468, 55: 2297496, 66: 2297524, 77: 2297552, 88: 2297608, 92: 2298178, 98
[2025-11-20 23:56:11] 2025-11-20 22:55:36,143 | INFO     | --------------------------------------------------
[2025-11-20 23:56:11] 2025-11-20 22:55:36,143 | INFO     | 
[2025-11-20 23:56:11] 2025-11-20 22:55:36,143 | INFO     | executing command: ls -lF /var/lib/boinc/slots/8
[2025-11-20 23:56:11] 2025-11-20 22:55:36,220 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-20 23:56:11] 2025-11-20 22:55:36,221 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-20 23:56:11] 2025-11-20 22:55:36,221 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-20 23:56:11] 2025-11-20 22:55:36,221 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-20 23:56:11] 2025-11-20 22:55:36,221 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-20 23:56:11] 2025-11-20 22:55:36,221 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-20 23:56:11] 2025-11-20 22:55:36,221 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-20 23:56:11] 2025-11-20 22:55:36,221 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-20 23:56:11] 2025-11-20 22:55:36,222 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-20 23:56:11] 2025-11-20 22:55:36,222 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-20 23:56:11] 2025-11-20 22:55:36,222 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-20 23:56:11] 2025-11-20 22:55:36,222 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-20 23:56:11] 2025-11-20 22:55:36,222 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-20 23:56:11] 2025-11-20 22:55:36,222 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-20 23:56:11] 2025-11-20 22:55:36,222 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-20 23:56:11] 2025-11-20 22:55:36,223 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-20 23:56:11] 2025-11-20 22:55:36,223 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-20 23:56:11] 2025-11-20 22:55:36,223 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-20 23:56:11] 2025-11-20 22:55:36,223 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-20 23:56:11] 2025-11-20 22:55:36,223 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-20 23:56:11] 2025-11-20 22:55:36,223 | INFO     | job 6891565254 has completed (purged errors)
[2025-11-20 23:56:11] 2025-11-20 22:55:36,223 | INFO     | overall cleanup function is called
[2025-11-20 23:56:11] 2025-11-20 22:55:37,242 | INFO     | --- collectZombieJob: --- 10, [2331]
[2025-11-20 23:56:11] 2025-11-20 22:55:37,242 | INFO     | zombie collector waiting for pid 2331
[2025-11-20 23:56:11] 2025-11-20 22:55:37,242 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-20 23:56:11] 2025-11-20 22:55:37,242 | INFO     | collected zombie processes
[2025-11-20 23:56:11] 2025-11-20 22:55:37,243 | INFO     | will attempt to kill all subprocesses of pid=2331
[2025-11-20 23:56:11] 2025-11-20 22:55:37,350 | INFO     | process IDs to be killed: [2331] (in reverse order)
[2025-11-20 23:56:11] 2025-11-20 22:55:37,459 | WARNING  | found no corresponding commands to process id(s)
[2025-11-20 23:56:11] 2025-11-20 22:55:37,459 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-20 23:56:11] 2025-11-20 22:55:37,463 | INFO     | did not find any defunct processes belonging to 2331
[2025-11-20 23:56:11] 2025-11-20 22:55:37,467 | INFO     | did not find any defunct processes belonging to 2331
[2025-11-20 23:56:11] 2025-11-20 22:55:37,469 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-20 23:56:11] 2025-11-20 22:55:37,469 | INFO     | ready for new job
[2025-11-20 23:56:11] 2025-11-20 22:55:37,470 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-20 23:56:11] 2025-11-20 22:55:37,476 | INFO     | ***************************************
[2025-11-20 23:56:11] 2025-11-20 22:55:37,476 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-20 23:56:11] 2025-11-20 22:55:37,476 | INFO     | ***************************************
[2025-11-20 23:56:11] 2025-11-20 22:55:37,476 | INFO     | 
[2025-11-20 23:56:11] 2025-11-20 22:55:37,477 | INFO     | pilot is running in a VM
[2025-11-20 23:56:11] 2025-11-20 22:55:37,477 | INFO     | architecture information:
[2025-11-20 23:56:11] 2025-11-20 22:55:37,478 | INFO     | executing command: cat /etc/os-release
[2025-11-20 23:56:11] 2025-11-20 22:55:37,552 | INFO     | cat /etc/os-release:
[2025-11-20 23:56:11] NAME="CentOS Linux"
[2025-11-20 23:56:11] VERSION="7 (Core)"
[2025-11-20 23:56:11] ID="centos"
[2025-11-20 23:56:11] ID_LIKE="rhel fedora"
[2025-11-20 23:56:11] VERSION_ID="7"
[2025-11-20 23:56:11] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-20 23:56:11] ANSI_COLOR="0;31"
[2025-11-20 23:56:11] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-20 23:56:11] HOME_URL="https://www.centos.org/"
[2025-11-20 23:56:11] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-20 23:56:11] 
[2025-11-20 23:56:11] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-20 23:56:11] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-20 23:56:11] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-20 23:56:11] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-20 23:56:11] 
[2025-11-20 23:56:11] 2025-11-20 22:55:37,553 | INFO     | ***************************************
[2025-11-20 23:56:11] 2025-11-20 22:55:38,056 | INFO     | executing command: df -mP /var/lib/boinc/slots/8
[2025-11-20 23:56:11] 2025-11-20 22:55:38,227 | INFO     | sufficient remaining disk space (494302920704 B)
[2025-11-20 23:56:11] 2025-11-20 22:55:38,228 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-20 23:56:11] 2025-11-20 22:55:38,228 | INFO     | current server update state: UPDATING_FINAL
[2025-11-20 23:56:11] 2025-11-20 22:55:38,228 | INFO     | update_server=False
[2025-11-20 23:56:11] 2025-11-20 22:55:38,228 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-20 23:56:11] 2025-11-20 22:55:38,230 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-20 23:56:11] 2025-11-20 22:55:38,230 | INFO     | aborting loop
[2025-11-20 23:56:11] 2025-11-20 22:55:38,294 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-20 23:56:11] 2025-11-20 22:55:38,403 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-20 23:56:11] 2025-11-20 22:55:39,065 | INFO     | all data control threads have been joined
[2025-11-20 23:56:11] 2025-11-20 22:55:39,234 | INFO     | [job] retrieve thread has finished
[2025-11-20 23:56:11] 2025-11-20 22:55:39,236 | INFO     | [job] job monitor thread has finished
[2025-11-20 23:56:11] 2025-11-20 22:55:39,267 | INFO     | [job] validate thread has finished
[2025-11-20 23:56:11] 2025-11-20 22:55:39,313 | INFO     | [payload] execute_payloads thread has finished
[2025-11-20 23:56:11] 2025-11-20 22:55:39,389 | INFO     | all job control threads have been joined
[2025-11-20 23:56:11] 2025-11-20 22:55:39,424 | INFO     | all payload control threads have been joined
[2025-11-20 23:56:11] 2025-11-20 22:55:39,655 | INFO     | [payload] failed_post thread has finished
[2025-11-20 23:56:11] 2025-11-20 22:55:39,915 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-20 23:56:11] 2025-11-20 22:55:40,071 | INFO     | [data] control thread has finished
[2025-11-20 23:56:11] 2025-11-20 22:55:40,292 | INFO     | [job] create_data_payload thread has finished
[2025-11-20 23:56:11] 2025-11-20 22:55:40,395 | INFO     | [job] control thread has finished
[2025-11-20 23:56:11] 2025-11-20 22:55:40,410 | INFO     | [data] copytool_out thread has finished
[2025-11-20 23:56:11] 2025-11-20 22:55:40,430 | INFO     | [payload] control thread has finished
[2025-11-20 23:56:11] 2025-11-20 22:55:40,445 | INFO     | [payload] validate_post thread has finished
[2025-11-20 23:56:11] 2025-11-20 22:55:40,561 | INFO     | [payload] validate_pre thread has finished
[2025-11-20 23:56:11] 2025-11-20 22:55:40,576 | INFO     | [data] copytool_in thread has finished
[2025-11-20 23:56:11] 2025-11-20 22:55:41,158 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-20 23:56:11] 2025-11-20 22:55:42,164 | INFO     | [job] queue monitor thread has finished
[2025-11-20 23:56:11] 2025-11-20 22:55:42,303 | INFO     | [data] queue_monitor thread has finished
[2025-11-20 23:56:11] 2025-11-20 22:55:58,082 | INFO     | [monitor] cgroup control has ended
[2025-11-20 23:56:11] 2025-11-20 22:55:59,649 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139648640825152)>', '<ExcThread(monitor, started 139647900444416)>']
[2025-11-20 23:56:11] 2025-11-20 22:56:04,675 | INFO     | all workflow threads have been joined
[2025-11-20 23:56:11] 2025-11-20 22:56:04,675 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-20 23:56:11] 2025-11-20 22:56:04,675 | INFO     | traces error code: 0
[2025-11-20 23:56:11] 2025-11-20 22:56:04,676 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-20 23:56:11] 2025-11-20 22:56:07,685 | INFO     | PID=28143 has CPU usage=2.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-20 23:56:11] 2025-11-20 22:56:07,685 | INFO     | .. there are 9 such processes running
[2025-11-20 23:56:11] 2025-11-20 22:56:07,686 | INFO     | found 0 job(s) in 20 queues
[2025-11-20 23:56:11] 2025-11-20 22:56:07,686 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-20 23:56:11] 2025-11-20 22:56:07,686 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-20 23:56:11] 2025-11-20 22:56:07,686 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-20 23:56:11] 2025-11-20 22:56:07,686 | INFO     | [monitor] control thread has ended
[2025-11-20 23:56:11] 2025-11-20 22:56:08,021 [wrapper] ==== pilot stdout END ====
[2025-11-20 23:56:11] 2025-11-20 22:56:08,161 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-20 23:56:11] 2025-11-20 22:56:08,272 [wrapper] pilotpid: 28143
[2025-11-20 23:56:11] 2025-11-20 22:56:08,288 [wrapper] Pilot exit status: 0
[2025-11-20 23:56:11] 2025-11-20 22:56:08,476 [wrapper] pandaids: 6891565254
[2025-11-20 23:56:11] 2025-11-20 22:56:08,585 [wrapper] cleanup supervisor_pilot  8092 28144
[2025-11-20 23:56:11] 2025-11-20 22:56:08,588 [wrapper] Test setup, not cleaning
[2025-11-20 23:56:11] 2025-11-20 22:56:08,591 [wrapper] apfmon messages muted
[2025-11-20 23:56:11] 2025-11-20 22:56:08,642 [wrapper] ==== wrapper stdout END ====
[2025-11-20 23:56:11] 2025-11-20 22:56:08,736 [wrapper] ==== wrapper stderr END ====
[2025-11-20 23:56:11]  *** Error codes and diagnostics ***
[2025-11-20 23:56:11]     "exeErrorCode": 0,
[2025-11-20 23:56:11]     "exeErrorDiag": "",
[2025-11-20 23:56:11]     "pilotErrorCode": 0,
[2025-11-20 23:56:11]     "pilotErrorDiag": "",
[2025-11-20 23:56:11]  *** Listing of results directory ***
[2025-11-20 23:56:11] total 1338504
[2025-11-20 23:56:11] -rw-r--r--. 1 boinc boinc    576529 Nov 18 16:15 pilot3.tar.gz
[2025-11-20 23:56:11] -rw-r--r--. 1 boinc boinc      5112 Nov 18 16:29 queuedata.json
[2025-11-20 23:56:11] -rwx------. 1 boinc boinc     36292 Nov 18 16:30 runpilot2-wrapper.sh
[2025-11-20 23:56:11] -rw-r--r--. 1 boinc boinc       100 Nov 19 22:13 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-20 23:56:11] -rwxr-xr-x. 1 boinc boinc      7986 Nov 19 22:13 run_atlas
[2025-11-20 23:56:11] -rw-r--r--. 1 boinc boinc       105 Nov 19 22:13 job.xml
[2025-11-20 23:56:11] -rw-r--r--. 1 boinc boinc      6389 Nov 19 22:13 init_data.xml
[2025-11-20 23:56:11] -rw-r--r--. 2 boinc boinc 408040963 Nov 19 22:13 EVNT.47493065._000140.pool.root.1
[2025-11-20 23:56:11] -rw-r--r--. 2 boinc boinc     15120 Nov 19 22:13 start_atlas.sh
[2025-11-20 23:56:11] drwxrwx--x. 2 boinc boinc        68 Nov 19 22:13 shared
[2025-11-20 23:56:11] -rw-r--r--. 2 boinc boinc    590102 Nov 19 22:13 input.tar.gz
[2025-11-20 23:56:11] -rw-r--r--. 1 boinc boinc         0 Nov 19 22:13 boinc_lockfile
[2025-11-20 23:56:11] -rw-r--r--. 1 boinc boinc      2773 Nov 19 22:13 pandaJob.out
[2025-11-20 23:56:11] -rw-------. 1 boinc boinc    989443 Nov 19 22:17 agis_schedconf.cvmfs.json
[2025-11-20 23:56:11] drwx------. 5 boinc boinc      4096 Nov 19 22:17 pilot3
[2025-11-20 23:56:11] -rw-r--r--. 1 boinc boinc       533 Nov 20 23:31 boinc_task_state.xml
[2025-11-20 23:56:11] -rw-------. 1 boinc boinc 929030104 Nov 20 23:52 HITS.47493068._001400.pool.root.1
[2025-11-20 23:56:11] -rw-------. 1 boinc boinc      1031 Nov 20 23:53 memory_monitor_summary.json
[2025-11-20 23:56:11] -rw-------. 1 boinc boinc   1526164 Nov 20 23:53 agis_ddmendpoints.agis.ALL.json
[2025-11-20 23:56:11] -rw-------. 1 boinc boinc   2572244 Nov 20 23:53 log.47493068._001400.job.log.tgz.1
[2025-11-20 23:56:11] -rw-------. 1 boinc boinc        95 Nov 20 23:55 pilot_heartbeat.json
[2025-11-20 23:56:11] -rw-------. 1 boinc boinc      8624 Nov 20 23:55 heartbeat.json
[2025-11-20 23:56:11] -rw-------. 1 boinc boinc       820 Nov 20 23:56 pilotlog.txt
[2025-11-20 23:56:11] -rw-r--r--. 1 boinc boinc        29 Nov 20 23:56 wrapper_checkpoint.txt
[2025-11-20 23:56:11] -rw-r--r--. 1 boinc boinc      8192 Nov 20 23:56 boinc_mmap_file
[2025-11-20 23:56:11] -rw-------. 1 boinc boinc  12254725 Nov 20 23:56 log.47493068._001400.job.log.1
[2025-11-20 23:56:11] -rw-------. 1 boinc boinc       353 Nov 20 23:56 output.list
[2025-11-20 23:56:11] -rw-r--r--. 1 boinc boinc       620 Nov 20 23:56 runtime_log
[2025-11-20 23:56:11] -rw-------. 1 boinc boinc  14848000 Nov 20 23:56 result.tar.gz
[2025-11-20 23:56:11] -rw-------. 1 boinc boinc       662 Nov 20 23:56 yfHKDmdqcf8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmhIFKDmHnvEvm.diag
[2025-11-20 23:56:11] -rw-r--r--. 1 boinc boinc      8703 Nov 20 23:56 runtime_log.err
[2025-11-20 23:56:11] -rw-r--r--. 1 boinc boinc     21496 Nov 20 23:56 stderr.txt
[2025-11-20 23:56:11] HITS file was successfully produced:
[2025-11-20 23:56:11] -rw-------. 1 boinc boinc 929030104 Nov 20 23:52 shared/HITS.pool.root.1
[2025-11-20 23:56:11]  *** Contents of shared directory: ***
[2025-11-20 23:56:11] total 1320832
[2025-11-20 23:56:11] -rw-r--r--. 2 boinc boinc 408040963 Nov 19 22:13 ATLAS.root_0
[2025-11-20 23:56:11] -rw-r--r--. 2 boinc boinc     15120 Nov 19 22:13 start_atlas.sh
[2025-11-20 23:56:11] -rw-r--r--. 2 boinc boinc    590102 Nov 19 22:13 input.tar.gz
[2025-11-20 23:56:11] -rw-------. 1 boinc boinc 929030104 Nov 20 23:52 HITS.pool.root.1
[2025-11-20 23:56:11] -rw-------. 1 boinc boinc  14848000 Nov 20 23:56 result.tar.gz
23:56:13 (24376): run_atlas exited; CPU time 342943.195090
23:56:13 (24376): called boinc_finish(0)

</stderr_txt>
]]>

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