Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
03:43:49 (11718): wrapper (7.7.26015): starting
03:43:49 (11718): wrapper: running run_atlas (--nthreads 8)
[2025-11-21 03:43:49] Arguments: --nthreads 8
[2025-11-21 03:43:49] Threads: 8
[2025-11-21 03:43:49] Checking for CVMFS
[2025-11-21 03:43:50] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-21 03:43:50] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-21 03:43:50] Running cvmfs_config stat atlas.cern.ch
[2025-11-21 03:43:51] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-21 03:43:51] 2.11.2.0 15981 182556 138820 153104 2 189 15118456 25165824 4585 130560 4 64282580 99.886 32615700 2638 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-21 03:43:51] CVMFS is ok
[2025-11-21 03:43:52] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-21 03:43:52] Checking for apptainer binary...
[2025-11-21 03:43:52] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-21 03:43:52] Running /usr/bin/apptainer --version
[2025-11-21 03:43:52] apptainer version 1.3.2-1.el7
[2025-11-21 03:43:52] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-21 03:44:08] cg-vwn479.simple-grid.lan
[2025-11-21 03:44:08] apptainer works
[2025-11-21 03:44:08] Set ATHENA_PROC_NUMBER=8
[2025-11-21 03:44:08] Set ATHENA_CORE_NUMBER=8
[2025-11-21 03:44:08] Starting ATLAS job with PandaID=6891586353
[2025-11-21 03:44:08] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/12 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-22 02:42:37]  *** The last 200 lines of the pilot log: ***
[2025-11-22 02:42:37] 2025-11-22 01:41:21,037 | INFO     | time since job start (82400s) is within the limit (172800.0s)
[2025-11-22 02:42:37] 2025-11-22 01:41:23,010 | INFO     | monitor loop #5574: job 0:6891586353 is in state 'finished'
[2025-11-22 02:42:37] 2025-11-22 01:41:23,010 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-22 02:42:37] 2025-11-22 01:41:23,044 | INFO     | time since job start (82402s) is within the limit (172800.0s)
[2025-11-22 02:42:37] 2025-11-22 01:41:25,051 | INFO     | time since job start (82404s) is within the limit (172800.0s)
[2025-11-22 02:42:37] 2025-11-22 01:41:25,517 | INFO     | monitor loop #5575: job 0:6891586353 is in state 'finished'
[2025-11-22 02:42:37] 2025-11-22 01:41:25,517 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-22 02:42:37] 2025-11-22 01:41:27,060 | INFO     | time since job start (82406s) is within the limit (172800.0s)
[2025-11-22 02:42:37] 2025-11-22 01:41:28,022 | INFO     | monitor loop #5576: job 0:6891586353 is in state 'finished'
[2025-11-22 02:42:37] 2025-11-22 01:41:28,022 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-22 02:42:37] 2025-11-22 01:41:29,065 | INFO     | time since job start (82408s) is within the limit (172800.0s)
[2025-11-22 02:42:37] 2025-11-22 01:41:30,463 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-22 02:42:37] 2025-11-22 01:41:30,464 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 2249.998
[2025-11-22 02:42:37] 2025-11-22 01:41:30,466 | INFO     | using path: /var/lib/boinc/slots/12/PanDA_Pilot-6891586353/memory_monitor_summary.json (trf name=prmon)
[2025-11-22 02:42:37] 2025-11-22 01:41:30,467 | INFO     | extracted standard info from prmon json
[2025-11-22 02:42:37] 2025-11-22 01:41:30,467 | INFO     | extracted standard memory fields from prmon json
[2025-11-22 02:42:37] 2025-11-22 01:41:30,467 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-22 02:42:37] 2025-11-22 01:41:30,490 | INFO     | fitting pss+swap vs Time
[2025-11-22 02:42:37] 2025-11-22 01:41:30,493 | INFO     | sum of square deviations: 754474392221.0779
[2025-11-22 02:42:37] 2025-11-22 01:41:30,532 | INFO     | monitor loop #5577: job 0:6891586353 is in state 'finished'
[2025-11-22 02:42:37] 2025-11-22 01:41:30,532 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-22 02:42:37] 2025-11-22 01:41:30,541 | INFO     | sum of deviations: 1941244880139.1821
[2025-11-22 02:42:37] 2025-11-22 01:41:30,542 | INFO     | mean x: 1763734577.33829
[2025-11-22 02:42:37] 2025-11-22 01:41:30,542 | INFO     | mean y: 2857613.32267658
[2025-11-22 02:42:37] 2025-11-22 01:41:30,542 | INFO     | intersect: -4535190004.308245
[2025-11-22 02:42:37] 2025-11-22 01:41:30,543 | INFO     | chi2: 15.501693686933738
[2025-11-22 02:42:37] 2025-11-22 01:41:30,545 | INFO     | sum of square deviations: 746091956127.0894
[2025-11-22 02:42:37] 2025-11-22 01:41:30,589 | INFO     | sum of deviations: 2386518544884.962
[2025-11-22 02:42:37] 2025-11-22 01:41:30,590 | INFO     | mean x: 1763734424.8432837
[2025-11-22 02:42:37] 2025-11-22 01:41:30,590 | INFO     | mean y: 2865712.1902985075
[2025-11-22 02:42:37] 2025-11-22 01:41:30,590 | INFO     | intersect: -5638777892.962732
[2025-11-22 02:42:37] 2025-11-22 01:41:30,591 | INFO     | chi2: 12.275297282195863
[2025-11-22 02:42:37] 2025-11-22 01:41:30,591 | INFO     | current chi2=12.275297282195863 (change=20.813186416251924 %)
[2025-11-22 02:42:37] 2025-11-22 01:41:30,591 | INFO     | right removable region: 1339
[2025-11-22 02:42:37] 2025-11-22 01:41:30,593 | INFO     | sum of square deviations: 746090858127.0896
[2025-11-22 02:42:37] 2025-11-22 01:41:30,637 | INFO     | sum of deviations: 1522146663929.5122
[2025-11-22 02:42:37] 2025-11-22 01:41:30,638 | INFO     | mean x: 1763734729.8432837
[2025-11-22 02:42:37] 2025-11-22 01:41:30,638 | INFO     | mean y: 2865232.673880597
[2025-11-22 02:42:37] 2025-11-22 01:41:30,638 | INFO     | intersect: -3595440397.054485
[2025-11-22 02:42:37] 2025-11-22 01:41:30,639 | INFO     | chi2: 12.890555423116327
[2025-11-22 02:42:37] 2025-11-22 01:41:30,640 | INFO     | current chi2=12.890555423116327 (change=16.844212745722874 %)
[2025-11-22 02:42:37] 2025-11-22 01:41:30,640 | INFO     | left removable region: 10
[2025-11-22 02:42:37] 2025-11-22 01:41:30,641 | INFO     | sum of square deviations: 727867870306.6018
[2025-11-22 02:42:37] 2025-11-22 01:41:30,687 | INFO     | sum of deviations: 1974514322962.112
[2025-11-22 02:42:37] 2025-11-22 01:41:30,687 | INFO     | mean x: 1763734699.3506396
[2025-11-22 02:42:37] 2025-11-22 01:41:30,688 | INFO     | mean y: 2876869.690744921
[2025-11-22 02:42:37] 2025-11-22 01:41:30,688 | INFO     | intersect: -4781672040.685202
[2025-11-22 02:42:37] 2025-11-22 01:41:30,689 | INFO     | chi2: 8.831248587189744
[2025-11-22 02:42:37] 2025-11-22 01:41:30,689 | INFO     | current memory leak: 2.71 B/s (using 1329 data points, chi2=8.83)
[2025-11-22 02:42:37] 2025-11-22 01:41:30,692 | INFO     | could have reported an average CPU frequency of 2249 MHz (46 samples)
[2025-11-22 02:42:37] 2025-11-22 01:41:30,692 | INFO     | ..............................
[2025-11-22 02:42:37] 2025-11-22 01:41:30,693 | INFO     | . Timing measurements:
[2025-11-22 02:42:37] 2025-11-22 01:41:30,693 | INFO     | . get job = 0 s
[2025-11-22 02:42:37] 2025-11-22 01:41:30,693 | INFO     | . initial setup = 4 s
[2025-11-22 02:42:37] 2025-11-22 01:41:30,693 | INFO     | . payload setup = 71 s
[2025-11-22 02:42:37] 2025-11-22 01:41:30,693 | INFO     | . stage-in = 0 s
[2025-11-22 02:42:37] 2025-11-22 01:41:30,693 | INFO     | . payload execution = 82019 s
[2025-11-22 02:42:37] 2025-11-22 01:41:30,693 | INFO     | . stage-out = 5 s
[2025-11-22 02:42:37] 2025-11-22 01:41:30,693 | INFO     | . log creation = 1 s
[2025-11-22 02:42:37] 2025-11-22 01:41:30,693 | INFO     | ..............................
[2025-11-22 02:42:37] 2025-11-22 01:41:30,803 | INFO     | 
[2025-11-22 02:42:37] 2025-11-22 01:41:30,803 | INFO     | job summary report
[2025-11-22 02:42:37] 2025-11-22 01:41:30,803 | INFO     | --------------------------------------------------
[2025-11-22 02:42:37] 2025-11-22 01:41:30,803 | INFO     | PanDA job id: 6891586353
[2025-11-22 02:42:37] 2025-11-22 01:41:30,803 | INFO     | task id: 47493068
[2025-11-22 02:42:37] 2025-11-22 01:41:30,803 | INFO     | errors: (none)
[2025-11-22 02:42:37] 2025-11-22 01:41:30,804 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-22 02:42:37] 2025-11-22 01:41:30,804 | INFO     | pilot state: finished 
[2025-11-22 02:42:37] 2025-11-22 01:41:30,804 | INFO     | transexitcode: 0
[2025-11-22 02:42:37] 2025-11-22 01:41:30,804 | INFO     | exeerrorcode: 0
[2025-11-22 02:42:37] 2025-11-22 01:41:30,804 | INFO     | exeerrordiag: 
[2025-11-22 02:42:37] 2025-11-22 01:41:30,804 | INFO     | exitcode: 0
[2025-11-22 02:42:37] 2025-11-22 01:41:30,804 | INFO     | exitmsg: OK
[2025-11-22 02:42:37] 2025-11-22 01:41:30,804 | INFO     | cpuconsumptiontime: 301128 s
[2025-11-22 02:42:37] 2025-11-22 01:41:30,804 | INFO     | nevents: 1000
[2025-11-22 02:42:37] 2025-11-22 01:41:30,804 | INFO     | neventsw: 0
[2025-11-22 02:42:37] 2025-11-22 01:41:30,804 | INFO     | pid: 22119
[2025-11-22 02:42:37] 2025-11-22 01:41:30,804 | INFO     | pgrp: 22119
[2025-11-22 02:42:37] 2025-11-22 01:41:30,804 | INFO     | corecount: 8
[2025-11-22 02:42:37] 2025-11-22 01:41:30,805 | INFO     | event service: False
[2025-11-22 02:42:37] 2025-11-22 01:41:30,805 | INFO     | sizes: {0: 2298626, 1: 2298825, 11: 2298825, 22: 2298853, 33: 2298881, 44: 2298937, 54: 2299093, 65: 2299121, 76: 2299149, 87: 2299205, 97: 2299233, 105: 2299803, 
[2025-11-22 02:42:37] 2025-11-22 01:41:30,805 | INFO     | --------------------------------------------------
[2025-11-22 02:42:37] 2025-11-22 01:41:30,805 | INFO     | 
[2025-11-22 02:42:37] 2025-11-22 01:41:30,805 | INFO     | executing command: ls -lF /var/lib/boinc/slots/12
[2025-11-22 02:42:37] 2025-11-22 01:41:31,071 | INFO     | time since job start (82410s) is within the limit (172800.0s)
[2025-11-22 02:42:37] 2025-11-22 01:41:31,088 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-22 02:42:37] 2025-11-22 01:41:31,088 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-22 02:42:37] 2025-11-22 01:41:31,089 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-22 02:42:37] 2025-11-22 01:41:31,089 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-22 02:42:37] 2025-11-22 01:41:31,089 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-22 02:42:37] 2025-11-22 01:41:31,089 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-22 02:42:37] 2025-11-22 01:41:31,089 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-22 02:42:37] 2025-11-22 01:41:31,089 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-22 02:42:37] 2025-11-22 01:41:31,089 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-22 02:42:37] 2025-11-22 01:41:31,089 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-22 02:42:37] 2025-11-22 01:41:31,089 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-22 02:42:37] 2025-11-22 01:41:31,089 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-22 02:42:37] 2025-11-22 01:41:31,089 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-22 02:42:37] 2025-11-22 01:41:31,090 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-22 02:42:37] 2025-11-22 01:41:31,090 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-22 02:42:37] 2025-11-22 01:41:31,090 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-22 02:42:37] 2025-11-22 01:41:31,090 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-22 02:42:37] 2025-11-22 01:41:31,090 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-22 02:42:37] 2025-11-22 01:41:31,090 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-22 02:42:37] 2025-11-22 01:41:31,090 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-22 02:42:37] 2025-11-22 01:41:31,090 | INFO     | job 6891586353 has completed (purged errors)
[2025-11-22 02:42:37] 2025-11-22 01:41:31,090 | INFO     | overall cleanup function is called
[2025-11-22 02:42:37] 2025-11-22 01:41:32,110 | INFO     | --- collectZombieJob: --- 10, [22119]
[2025-11-22 02:42:37] 2025-11-22 01:41:32,110 | INFO     | zombie collector waiting for pid 22119
[2025-11-22 02:42:37] 2025-11-22 01:41:32,110 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-22 02:42:37] 2025-11-22 01:41:32,110 | INFO     | collected zombie processes
[2025-11-22 02:42:37] 2025-11-22 01:41:32,110 | INFO     | will attempt to kill all subprocesses of pid=22119
[2025-11-22 02:42:37] 2025-11-22 01:41:32,403 | INFO     | PID=15526 has CPU usage=2.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-22 02:42:37] 2025-11-22 01:41:32,404 | INFO     | .. there are 9 such processes running
[2025-11-22 02:42:37] 2025-11-22 01:41:32,425 | INFO     | process IDs to be killed: [22119] (in reverse order)
[2025-11-22 02:42:37] 2025-11-22 01:41:33,182 | WARNING  | found no corresponding commands to process id(s)
[2025-11-22 02:42:37] 2025-11-22 01:41:33,183 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-22 02:42:37] 2025-11-22 01:41:33,186 | INFO     | did not find any defunct processes belonging to 22119
[2025-11-22 02:42:37] 2025-11-22 01:41:33,189 | INFO     | did not find any defunct processes belonging to 22119
[2025-11-22 02:42:37] 2025-11-22 01:41:33,191 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-22 02:42:37] 2025-11-22 01:41:33,192 | INFO     | ready for new job
[2025-11-22 02:42:37] 2025-11-22 01:41:33,192 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-22 02:42:37] 2025-11-22 01:41:33,198 | INFO     | ***************************************
[2025-11-22 02:42:37] 2025-11-22 01:41:33,198 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-22 02:42:37] 2025-11-22 01:41:33,198 | INFO     | ***************************************
[2025-11-22 02:42:37] 2025-11-22 01:41:33,198 | INFO     | 
[2025-11-22 02:42:37] 2025-11-22 01:41:33,199 | INFO     | pilot is running in a VM
[2025-11-22 02:42:37] 2025-11-22 01:41:33,199 | INFO     | architecture information:
[2025-11-22 02:42:37] 2025-11-22 01:41:33,200 | INFO     | executing command: cat /etc/os-release
[2025-11-22 02:42:37] 2025-11-22 01:41:33,230 | INFO     | cat /etc/os-release:
[2025-11-22 02:42:37] NAME="CentOS Linux"
[2025-11-22 02:42:37] VERSION="7 (Core)"
[2025-11-22 02:42:37] ID="centos"
[2025-11-22 02:42:37] ID_LIKE="rhel fedora"
[2025-11-22 02:42:37] VERSION_ID="7"
[2025-11-22 02:42:37] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-22 02:42:37] ANSI_COLOR="0;31"
[2025-11-22 02:42:37] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-22 02:42:37] HOME_URL="https://www.centos.org/"
[2025-11-22 02:42:37] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-22 02:42:37] 
[2025-11-22 02:42:37] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-22 02:42:37] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-22 02:42:37] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-22 02:42:37] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-22 02:42:37] 
[2025-11-22 02:42:37] 2025-11-22 01:41:33,230 | INFO     | ***************************************
[2025-11-22 02:42:37] 2025-11-22 01:41:33,733 | INFO     | executing command: df -mP /var/lib/boinc/slots/12
[2025-11-22 02:42:37] 2025-11-22 01:41:33,960 | INFO     | sufficient remaining disk space (493586743296 B)
[2025-11-22 02:42:37] 2025-11-22 01:41:33,960 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-22 02:42:37] 2025-11-22 01:41:33,961 | INFO     | current server update state: UPDATING_FINAL
[2025-11-22 02:42:37] 2025-11-22 01:41:33,961 | INFO     | update_server=False
[2025-11-22 02:42:37] 2025-11-22 01:41:33,961 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-22 02:42:37] 2025-11-22 01:41:33,962 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-22 02:42:37] 2025-11-22 01:41:34,048 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-22 02:42:37] 2025-11-22 01:41:34,049 | INFO     | aborting loop
[2025-11-22 02:42:37] 2025-11-22 01:41:34,192 | INFO     | all data control threads have been joined
[2025-11-22 02:42:37] 2025-11-22 01:41:34,952 | INFO     | all job control threads have been joined
[2025-11-22 02:42:37] 2025-11-22 01:41:34,967 | INFO     | [job] retrieve thread has finished
[2025-11-22 02:42:37] 2025-11-22 01:41:35,055 | INFO     | [job] job monitor thread has finished
[2025-11-22 02:42:37] 2025-11-22 01:41:35,101 | INFO     | [payload] execute_payloads thread has finished
[2025-11-22 02:42:37] 2025-11-22 01:41:35,111 | INFO     | all payload control threads have been joined
[2025-11-22 02:42:37] 2025-11-22 01:41:35,198 | INFO     | [data] control thread has finished
[2025-11-22 02:42:37] 2025-11-22 01:41:35,348 | INFO     | [job] validate thread has finished
[2025-11-22 02:42:37] 2025-11-22 01:41:35,361 | INFO     | [data] copytool_in thread has finished
[2025-11-22 02:42:37] 2025-11-22 01:41:35,571 | INFO     | [job] create_data_payload thread has finished
[2025-11-22 02:42:37] 2025-11-22 01:41:35,627 | INFO     | [payload] failed_post thread has finished
[2025-11-22 02:42:37] 2025-11-22 01:41:35,665 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-22 02:42:37] 2025-11-22 01:41:35,815 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-22 02:42:37] 2025-11-22 01:41:35,889 | INFO     | [payload] validate_pre thread has finished
[2025-11-22 02:42:37] 2025-11-22 01:41:35,959 | INFO     | [job] control thread has finished
[2025-11-22 02:42:37] 2025-11-22 01:41:35,969 | INFO     | [data] copytool_out thread has finished
[2025-11-22 02:42:37] 2025-11-22 01:41:36,117 | INFO     | [payload] control thread has finished
[2025-11-22 02:42:37] 2025-11-22 01:41:36,504 | INFO     | [payload] validate_post thread has finished
[2025-11-22 02:42:37] 2025-11-22 01:41:36,822 | INFO     | [job] queue monitor thread has finished
[2025-11-22 02:42:37] 2025-11-22 01:41:36,874 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-22 02:42:37] 2025-11-22 01:41:40,883 | INFO     | [data] queue_monitor thread has finished
[2025-11-22 02:42:37] 2025-11-22 01:42:04,600 | INFO     | PID=15526 has CPU usage=0.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-22 02:42:37] 2025-11-22 01:42:04,601 | INFO     | .. there are 9 such processes running
[2025-11-22 02:42:37] 2025-11-22 01:42:04,601 | INFO     | found 0 job(s) in 20 queues
[2025-11-22 02:42:37] 2025-11-22 01:42:04,601 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-22 02:42:37] 2025-11-22 01:42:04,601 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-22 02:42:37] 2025-11-22 01:42:25,279 | INFO     | [monitor] cgroup control has ended
[2025-11-22 02:42:37] 2025-11-22 01:42:26,786 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140084352452416)>', '<ExcThread(monitor, started 140084125517568)>']
[2025-11-22 02:42:37] 2025-11-22 01:42:27,735 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-22 02:42:37] 2025-11-22 01:42:27,736 | INFO     | [monitor] control thread has ended
[2025-11-22 02:42:37] 2025-11-22 01:42:31,811 | INFO     | all workflow threads have been joined
[2025-11-22 02:42:37] 2025-11-22 01:42:31,812 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-22 02:42:37] 2025-11-22 01:42:31,812 | INFO     | traces error code: 0
[2025-11-22 02:42:37] 2025-11-22 01:42:31,812 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-22 02:42:37] 2025-11-22 01:42:32,124 [wrapper] ==== pilot stdout END ====
[2025-11-22 02:42:37] 2025-11-22 01:42:32,231 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-22 02:42:37] 2025-11-22 01:42:32,317 [wrapper] pilotpid: 15526
[2025-11-22 02:42:37] 2025-11-22 01:42:32,416 [wrapper] Pilot exit status: 0
[2025-11-22 02:42:37] 2025-11-22 01:42:32,747 [wrapper] pandaids: 6891586353
[2025-11-22 02:42:37] 2025-11-22 01:42:33,921 [wrapper] cleanup supervisor_pilot 24070 15527
[2025-11-22 02:42:37] 2025-11-22 01:42:34,039 [wrapper] Test setup, not cleaning
[2025-11-22 02:42:37] 2025-11-22 01:42:34,145 [wrapper] apfmon messages muted
[2025-11-22 02:42:37] 2025-11-22 01:42:34,253 [wrapper] ==== wrapper stdout END ====
[2025-11-22 02:42:37] 2025-11-22 01:42:34,351 [wrapper] ==== wrapper stderr END ====
[2025-11-22 02:42:37]  *** Error codes and diagnostics ***
[2025-11-22 02:42:37]     "exeErrorCode": 0,
[2025-11-22 02:42:37]     "exeErrorDiag": "",
[2025-11-22 02:42:37]     "pilotErrorCode": 0,
[2025-11-22 02:42:37]     "pilotErrorDiag": "",
[2025-11-22 02:42:37]  *** Listing of results directory ***
[2025-11-22 02:42:37] total 1321876
[2025-11-22 02:42:37] -rw-r--r--. 1 boinc boinc    576529 Nov 18 18:24 pilot3.tar.gz
[2025-11-22 02:42:37] -rw-r--r--. 1 boinc boinc      5112 Nov 18 18:27 queuedata.json
[2025-11-22 02:42:37] -rwx------. 1 boinc boinc     36292 Nov 18 18:29 runpilot2-wrapper.sh
[2025-11-22 02:42:37] -rw-r--r--. 1 boinc boinc       100 Nov 21 03:43 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-22 02:42:37] -rwxr-xr-x. 1 boinc boinc      7986 Nov 21 03:43 run_atlas
[2025-11-22 02:42:37] -rw-r--r--. 1 boinc boinc       105 Nov 21 03:43 job.xml
[2025-11-22 02:42:37] -rw-r--r--. 2 boinc boinc 410039789 Nov 21 03:43 EVNT.47493065._000485.pool.root.1
[2025-11-22 02:42:37] -rw-r--r--. 2 boinc boinc     15120 Nov 21 03:43 start_atlas.sh
[2025-11-22 02:42:37] drwxrwx--x. 2 boinc boinc        68 Nov 21 03:43 shared
[2025-11-22 02:42:37] -rw-r--r--. 2 boinc boinc    590103 Nov 21 03:43 input.tar.gz
[2025-11-22 02:42:37] -rw-r--r--. 1 boinc boinc      6391 Nov 21 03:43 init_data.xml
[2025-11-22 02:42:37] -rw-r--r--. 1 boinc boinc         0 Nov 21 03:43 boinc_lockfile
[2025-11-22 02:42:37] -rw-r--r--. 1 boinc boinc      2773 Nov 21 03:44 pandaJob.out
[2025-11-22 02:42:37] -rw-------. 1 boinc boinc    989817 Nov 21 03:47 agis_schedconf.cvmfs.json
[2025-11-22 02:42:37] drwx------. 5 boinc boinc      4096 Nov 21 03:48 pilot3
[2025-11-22 02:42:37] -rw-r--r--. 1 boinc boinc       533 Nov 22 02:18 boinc_task_state.xml
[2025-11-22 02:42:37] -rw-------. 1 boinc boinc 912778629 Nov 22 02:38 HITS.47493068._004843.pool.root.1
[2025-11-22 02:42:37] -rw-------. 1 boinc boinc      1031 Nov 22 02:39 memory_monitor_summary.json
[2025-11-22 02:42:37] -rw-------. 1 boinc boinc   1526164 Nov 22 02:39 agis_ddmendpoints.agis.ALL.json
[2025-11-22 02:42:37] -rw-------. 1 boinc boinc   2442631 Nov 22 02:39 log.47493068._004843.job.log.tgz.1
[2025-11-22 02:42:37] -rw-------. 1 boinc boinc        95 Nov 22 02:41 pilot_heartbeat.json
[2025-11-22 02:42:37] -rw-------. 1 boinc boinc      8626 Nov 22 02:41 heartbeat.json
[2025-11-22 02:42:37] -rw-r--r--. 1 boinc boinc        29 Nov 22 02:42 wrapper_checkpoint.txt
[2025-11-22 02:42:37] -rw-r--r--. 1 boinc boinc      8192 Nov 22 02:42 boinc_mmap_file
[2025-11-22 02:42:37] -rw-------. 1 boinc boinc      4885 Nov 22 02:42 pilotlog.txt
[2025-11-22 02:42:37] -rw-------. 1 boinc boinc  10994371 Nov 22 02:42 log.47493068._004843.job.log.1
[2025-11-22 02:42:37] -rw-------. 1 boinc boinc       353 Nov 22 02:42 output.list
[2025-11-22 02:42:37] -rw-r--r--. 1 boinc boinc       620 Nov 22 02:42 runtime_log
[2025-11-22 02:42:37] -rw-------. 1 boinc boinc  13455360 Nov 22 02:42 result.tar.gz
[2025-11-22 02:42:37] -rw-r--r--. 1 boinc boinc      8717 Nov 22 02:42 runtime_log.err
[2025-11-22 02:42:37] -rw-------. 1 boinc boinc       662 Nov 22 02:42 MXuKDmZhef8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmo3FKDm2Vogzm.diag
[2025-11-22 02:42:37] -rw-r--r--. 1 boinc boinc     21504 Nov 22 02:42 stderr.txt
[2025-11-22 02:42:37] HITS file was successfully produced:
[2025-11-22 02:42:37] -rw-------. 1 boinc boinc 912778629 Nov 22 02:38 shared/HITS.pool.root.1
[2025-11-22 02:42:37]  *** Contents of shared directory: ***
[2025-11-22 02:42:37] total 1305556
[2025-11-22 02:42:37] -rw-r--r--. 2 boinc boinc 410039789 Nov 21 03:43 ATLAS.root_0
[2025-11-22 02:42:37] -rw-r--r--. 2 boinc boinc     15120 Nov 21 03:43 start_atlas.sh
[2025-11-22 02:42:37] -rw-r--r--. 2 boinc boinc    590103 Nov 21 03:43 input.tar.gz
[2025-11-22 02:42:37] -rw-------. 1 boinc boinc 912778629 Nov 22 02:38 HITS.pool.root.1
[2025-11-22 02:42:37] -rw-------. 1 boinc boinc  13455360 Nov 22 02:42 result.tar.gz
02:42:39 (11718): run_atlas exited; CPU time 301556.347355
02:42:39 (11718): called boinc_finish(0)

</stderr_txt>
]]>

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