Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
21:14:46 (4520): wrapper (7.7.26015): starting
21:14:46 (4520): wrapper: running run_atlas (--nthreads 8)
[2025-11-19 21:14:46] Arguments: --nthreads 8
[2025-11-19 21:14:46] Threads: 8
[2025-11-19 21:14:46] Checking for CVMFS
[2025-11-19 21:14:47] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-19 21:14:48] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-19 21:14:48] Running cvmfs_config stat atlas.cern.ch
[2025-11-19 21:14:49] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-19 21:14:49] 2.11.2.0 347 275557 145700 153055 2 236 14932217 25165824 4538 130560 2 130982097 99.879 77888812 3328 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-19 21:14:49] CVMFS is ok
[2025-11-19 21:14:49] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-19 21:14:49] Checking for apptainer binary...
[2025-11-19 21:14:49] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-19 21:14:49] Running /usr/bin/apptainer --version
[2025-11-19 21:14:49] apptainer version 1.3.2-1.el7
[2025-11-19 21:14:49] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-19 21:15:02] cg-vwn289.simple-grid.lan
[2025-11-19 21:15:02] apptainer works
[2025-11-19 21:15:02] Set ATHENA_PROC_NUMBER=8
[2025-11-19 21:15:02] Set ATHENA_CORE_NUMBER=8
[2025-11-19 21:15:02] Starting ATLAS job with PandaID=6891570837
[2025-11-19 21:15:02] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-20 23:09:32]  *** The last 200 lines of the pilot log: ***
[2025-11-20 23:09:32] 2025-11-20 22:08:34,008 | INFO     | fitting pss+swap vs Time
[2025-11-20 23:09:32] 2025-11-20 22:08:34,010 | INFO     | sum of square deviations: 1076110086075.9478
[2025-11-20 23:09:32] 2025-11-20 22:08:34,106 | INFO     | sum of deviations: 5109662475310.532
[2025-11-20 23:09:32] 2025-11-20 22:08:34,107 | INFO     | mean x: 1763630212.6466315
[2025-11-20 23:09:32] 2025-11-20 22:08:34,107 | INFO     | mean y: 2857581.391677675
[2025-11-20 23:09:32] 2025-11-20 22:08:34,107 | INFO     | intersect: -8371336875.557614
[2025-11-20 23:09:32] 2025-11-20 22:08:34,109 | INFO     | chi2: 19.144099768055924
[2025-11-20 23:09:32] 2025-11-20 22:08:34,111 | INFO     | sum of square deviations: 1065484211656.8545
[2025-11-20 23:09:32] 2025-11-20 22:08:34,199 | INFO     | sum of deviations: 5607631066238.202
[2025-11-20 23:09:32] 2025-11-20 22:08:34,199 | INFO     | mean x: 1763630060.1504307
[2025-11-20 23:09:32] 2025-11-20 22:08:34,199 | INFO     | mean y: 2864727.1444665343
[2025-11-20 23:09:32] 2025-11-20 22:08:34,199 | INFO     | intersect: -9279099854.266119
[2025-11-20 23:09:32] 2025-11-20 22:08:34,201 | INFO     | chi2: 16.144222470914602
[2025-11-20 23:09:32] 2025-11-20 22:08:34,201 | INFO     | current chi2=16.144222470914602 (change=15.669983616293894 %)
[2025-11-20 23:09:32] 2025-11-20 22:08:34,201 | INFO     | right removable region: 1508
[2025-11-20 23:09:32] 2025-11-20 22:08:34,204 | INFO     | sum of square deviations: 1065483152696.8536
[2025-11-20 23:09:32] 2025-11-20 22:08:34,263 | INFO     | sum of deviations: 4467098647990.6455
[2025-11-20 23:09:32] 2025-11-20 22:08:34,263 | INFO     | mean x: 1763630365.1504307
[2025-11-20 23:09:32] 2025-11-20 22:08:34,264 | INFO     | mean y: 2866802.1689860835
[2025-11-20 23:09:32] 2025-11-20 22:08:34,264 | INFO     | intersect: -7391253695.914796
[2025-11-20 23:09:32] 2025-11-20 22:08:34,266 | INFO     | chi2: 14.247930899062636
[2025-11-20 23:09:32] 2025-11-20 22:08:34,266 | INFO     | current chi2=14.247930899062636 (change=25.575341375743843 %)
[2025-11-20 23:09:32] 2025-11-20 22:08:34,268 | INFO     | sum of square deviations: 1054926406680.2139
[2025-11-20 23:09:32] 2025-11-20 22:08:34,341 | INFO     | sum of deviations: 3879953661528.0063
[2025-11-20 23:09:32] 2025-11-20 22:08:34,342 | INFO     | mean x: 1763630517.6542554
[2025-11-20 23:09:32] 2025-11-20 22:08:34,342 | INFO     | mean y: 2875283.678856383
[2025-11-20 23:09:32] 2025-11-20 22:08:34,342 | INFO     | intersect: -6483647985.834352
[2025-11-20 23:09:32] 2025-11-20 22:08:34,344 | INFO     | chi2: 10.282683385336185
[2025-11-20 23:09:32] 2025-11-20 22:08:34,344 | INFO     | current chi2=10.282683385336185 (change=27.83033930903836 %)
[2025-11-20 23:09:32] 2025-11-20 22:08:34,346 | INFO     | sum of square deviations: 1044439615463.5288
[2025-11-20 23:09:32] 2025-11-20 22:08:34,407 | INFO     | sum of deviations: 3356201611625.2573
[2025-11-20 23:09:32] 2025-11-20 22:08:34,407 | INFO     | mean x: 1763630670.1581054
[2025-11-20 23:09:32] 2025-11-20 22:08:34,407 | INFO     | mean y: 2882900.851234156
[2025-11-20 23:09:32] 2025-11-20 22:08:34,407 | INFO     | intersect: -5664366799.237394
[2025-11-20 23:09:32] 2025-11-20 22:08:34,409 | INFO     | chi2: 7.199360503564787
[2025-11-20 23:09:32] 2025-11-20 22:08:34,409 | INFO     | current chi2=7.199360503564787 (change=29.98558611819585 %)
[2025-11-20 23:09:32] 2025-11-20 22:08:34,412 | INFO     | sum of square deviations: 1034022637680.6233
[2025-11-20 23:09:32] 2025-11-20 22:08:34,477 | INFO     | sum of deviations: 3015991594721.8784
[2025-11-20 23:09:32] 2025-11-20 22:08:34,477 | INFO     | mean x: 1763630822.6613119
[2025-11-20 23:09:32] 2025-11-20 22:08:34,477 | INFO     | mean y: 2887878.151941098
[2025-11-20 23:09:32] 2025-11-20 22:08:34,477 | INFO     | intersect: -5141192670.480928
[2025-11-20 23:09:32] 2025-11-20 22:08:34,479 | INFO     | chi2: 5.815989507391424
[2025-11-20 23:09:32] 2025-11-20 22:08:34,480 | INFO     | current chi2=5.815989507391424 (change=19.215192731193028 %)
[2025-11-20 23:09:32] 2025-11-20 22:08:34,480 | INFO     | left removable region: 40
[2025-11-20 23:09:32] 2025-11-20 22:08:34,482 | INFO     | sum of square deviations: 980972435431.4353
[2025-11-20 23:09:32] 2025-11-20 22:08:34,547 | INFO     | sum of deviations: 3342128621117.1836
[2025-11-20 23:09:32] 2025-11-20 22:08:34,547 | INFO     | mean x: 1763631249.6641688
[2025-11-20 23:09:32] 2025-11-20 22:08:34,548 | INFO     | mean y: 2901534.1403269754
[2025-11-20 23:09:32] 2025-11-20 22:08:34,548 | INFO     | intersect: -6005710190.007617
[2025-11-20 23:09:32] 2025-11-20 22:08:34,549 | INFO     | chi2: 1.7129219527620956
[2025-11-20 23:09:32] 2025-11-20 22:08:34,550 | INFO     | current memory leak: 3.41 B/s (using 1468 data points, chi2=1.71)
[2025-11-20 23:09:32] 2025-11-20 22:08:34,552 | INFO     | could have reported an average CPU frequency of 1999 MHz (51 samples)
[2025-11-20 23:09:32] 2025-11-20 22:08:34,552 | INFO     | ..............................
[2025-11-20 23:09:32] 2025-11-20 22:08:34,552 | INFO     | . Timing measurements:
[2025-11-20 23:09:32] 2025-11-20 22:08:34,552 | INFO     | . get job = 0 s
[2025-11-20 23:09:32] 2025-11-20 22:08:34,552 | INFO     | . initial setup = 9 s
[2025-11-20 23:09:32] 2025-11-20 22:08:34,552 | INFO     | . payload setup = 179 s
[2025-11-20 23:09:32] 2025-11-20 22:08:34,553 | INFO     | . stage-in = 0 s
[2025-11-20 23:09:32] 2025-11-20 22:08:34,553 | INFO     | . payload execution = 92503 s
[2025-11-20 23:09:32] 2025-11-20 22:08:34,553 | INFO     | . stage-out = 4 s
[2025-11-20 23:09:32] 2025-11-20 22:08:34,553 | INFO     | . log creation = 1 s
[2025-11-20 23:09:32] 2025-11-20 22:08:34,554 | INFO     | ..............................
[2025-11-20 23:09:32] 2025-11-20 22:08:34,553 | INFO     | time since job start (92993s) is within the limit (172800.0s)
[2025-11-20 23:09:32] 2025-11-20 22:08:34,698 | INFO     | 
[2025-11-20 23:09:32] 2025-11-20 22:08:34,699 | INFO     | job summary report
[2025-11-20 23:09:32] 2025-11-20 22:08:34,699 | INFO     | --------------------------------------------------
[2025-11-20 23:09:32] 2025-11-20 22:08:34,699 | INFO     | PanDA job id: 6891570837
[2025-11-20 23:09:32] 2025-11-20 22:08:34,699 | INFO     | task id: 47493068
[2025-11-20 23:09:32] 2025-11-20 22:08:34,699 | INFO     | errors: (none)
[2025-11-20 23:09:32] 2025-11-20 22:08:34,699 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-20 23:09:32] 2025-11-20 22:08:34,699 | INFO     | pilot state: finished 
[2025-11-20 23:09:32] 2025-11-20 22:08:34,699 | INFO     | transexitcode: 0
[2025-11-20 23:09:32] 2025-11-20 22:08:34,699 | INFO     | exeerrorcode: 0
[2025-11-20 23:09:32] 2025-11-20 22:08:34,699 | INFO     | exeerrordiag: 
[2025-11-20 23:09:32] 2025-11-20 22:08:34,700 | INFO     | exitcode: 0
[2025-11-20 23:09:32] 2025-11-20 22:08:34,700 | INFO     | exitmsg: OK
[2025-11-20 23:09:32] 2025-11-20 22:08:34,700 | INFO     | cpuconsumptiontime: 344052 s
[2025-11-20 23:09:32] 2025-11-20 22:08:34,700 | INFO     | nevents: 1000
[2025-11-20 23:09:32] 2025-11-20 22:08:34,700 | INFO     | neventsw: 0
[2025-11-20 23:09:32] 2025-11-20 22:08:34,700 | INFO     | pid: 14890
[2025-11-20 23:09:32] 2025-11-20 22:08:34,700 | INFO     | pgrp: 14890
[2025-11-20 23:09:32] 2025-11-20 22:08:34,700 | INFO     | corecount: 8
[2025-11-20 23:09:32] 2025-11-20 22:08:34,700 | INFO     | event service: False
[2025-11-20 23:09:32] 2025-11-20 22:08:34,700 | INFO     | sizes: {0: 2296372, 1: 2297057, 2: 2297228, 13: 2297256, 23: 2297312, 34: 2297340, 45: 2297496, 56: 2297524, 66: 2297552, 77: 2297580, 88: 2297636, 99: 2297944, 10
[2025-11-20 23:09:32] 2025-11-20 22:08:34,701 | INFO     | --------------------------------------------------
[2025-11-20 23:09:32] 2025-11-20 22:08:34,701 | INFO     | 
[2025-11-20 23:09:32] 2025-11-20 22:08:34,701 | INFO     | executing command: ls -lF /var/lib/boinc/slots/3
[2025-11-20 23:09:32] 2025-11-20 22:08:35,205 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-20 23:09:32] 2025-11-20 22:08:35,205 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-20 23:09:32] 2025-11-20 22:08:35,205 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-20 23:09:32] 2025-11-20 22:08:35,205 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-20 23:09:32] 2025-11-20 22:08:35,205 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-20 23:09:32] 2025-11-20 22:08:35,205 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-20 23:09:32] 2025-11-20 22:08:35,206 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-20 23:09:32] 2025-11-20 22:08:35,206 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-20 23:09:32] 2025-11-20 22:08:35,206 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-20 23:09:32] 2025-11-20 22:08:35,206 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-20 23:09:32] 2025-11-20 22:08:35,206 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-20 23:09:32] 2025-11-20 22:08:35,206 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-20 23:09:32] 2025-11-20 22:08:35,206 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-20 23:09:32] 2025-11-20 22:08:35,206 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-20 23:09:32] 2025-11-20 22:08:35,206 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-20 23:09:32] 2025-11-20 22:08:35,206 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-20 23:09:32] 2025-11-20 22:08:35,207 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-20 23:09:32] 2025-11-20 22:08:35,207 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-20 23:09:32] 2025-11-20 22:08:35,207 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-20 23:09:32] 2025-11-20 22:08:35,207 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-20 23:09:32] 2025-11-20 22:08:35,207 | INFO     | job 6891570837 has completed (purged errors)
[2025-11-20 23:09:32] 2025-11-20 22:08:35,207 | INFO     | overall cleanup function is called
[2025-11-20 23:09:32] 2025-11-20 22:08:36,226 | INFO     | --- collectZombieJob: --- 10, [14890]
[2025-11-20 23:09:32] 2025-11-20 22:08:36,226 | INFO     | zombie collector waiting for pid 14890
[2025-11-20 23:09:32] 2025-11-20 22:08:36,226 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-20 23:09:32] 2025-11-20 22:08:36,226 | INFO     | collected zombie processes
[2025-11-20 23:09:32] 2025-11-20 22:08:36,227 | INFO     | will attempt to kill all subprocesses of pid=14890
[2025-11-20 23:09:32] 2025-11-20 22:08:36,337 | INFO     | process IDs to be killed: [14890] (in reverse order)
[2025-11-20 23:09:32] 2025-11-20 22:08:36,748 | WARNING  | found no corresponding commands to process id(s)
[2025-11-20 23:09:32] 2025-11-20 22:08:36,749 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-20 23:09:32] 2025-11-20 22:08:36,753 | INFO     | did not find any defunct processes belonging to 14890
[2025-11-20 23:09:32] 2025-11-20 22:08:36,756 | INFO     | did not find any defunct processes belonging to 14890
[2025-11-20 23:09:32] 2025-11-20 22:08:36,834 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-20 23:09:32] 2025-11-20 22:08:36,834 | INFO     | ready for new job
[2025-11-20 23:09:32] 2025-11-20 22:08:36,835 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-20 23:09:32] 2025-11-20 22:08:36,841 | INFO     | ***************************************
[2025-11-20 23:09:32] 2025-11-20 22:08:36,841 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-20 23:09:32] 2025-11-20 22:08:36,841 | INFO     | ***************************************
[2025-11-20 23:09:32] 2025-11-20 22:08:36,841 | INFO     | 
[2025-11-20 23:09:32] 2025-11-20 22:08:36,842 | INFO     | pilot is running in a VM
[2025-11-20 23:09:32] 2025-11-20 22:08:36,842 | INFO     | architecture information:
[2025-11-20 23:09:32] 2025-11-20 22:08:36,845 | INFO     | executing command: cat /etc/os-release
[2025-11-20 23:09:32] 2025-11-20 22:08:37,029 | INFO     | cat /etc/os-release:
[2025-11-20 23:09:32] NAME="CentOS Linux"
[2025-11-20 23:09:32] VERSION="7 (Core)"
[2025-11-20 23:09:32] ID="centos"
[2025-11-20 23:09:32] ID_LIKE="rhel fedora"
[2025-11-20 23:09:32] VERSION_ID="7"
[2025-11-20 23:09:32] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-20 23:09:32] ANSI_COLOR="0;31"
[2025-11-20 23:09:32] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-20 23:09:32] HOME_URL="https://www.centos.org/"
[2025-11-20 23:09:32] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-20 23:09:32] 
[2025-11-20 23:09:32] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-20 23:09:32] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-20 23:09:32] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-20 23:09:32] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-20 23:09:32] 
[2025-11-20 23:09:32] 2025-11-20 22:08:37,030 | INFO     | ***************************************
[2025-11-20 23:09:32] 2025-11-20 22:08:37,533 | INFO     | executing command: df -mP /var/lib/boinc/slots/3
[2025-11-20 23:09:32] 2025-11-20 22:08:37,781 | INFO     | sufficient remaining disk space (494792605696 B)
[2025-11-20 23:09:32] 2025-11-20 22:08:37,782 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-20 23:09:32] 2025-11-20 22:08:37,782 | INFO     | current server update state: UPDATING_FINAL
[2025-11-20 23:09:32] 2025-11-20 22:08:37,782 | INFO     | update_server=False
[2025-11-20 23:09:32] 2025-11-20 22:08:37,782 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-20 23:09:32] 2025-11-20 22:08:37,783 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-20 23:09:32] 2025-11-20 22:08:37,791 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-20 23:09:32] 2025-11-20 22:08:37,791 | INFO     | aborting loop
[2025-11-20 23:09:32] 2025-11-20 22:08:37,837 | INFO     | all data control threads have been joined
[2025-11-20 23:09:32] 2025-11-20 22:08:38,788 | INFO     | [job] retrieve thread has finished
[2025-11-20 23:09:32] 2025-11-20 22:08:38,796 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-20 23:09:32] 2025-11-20 22:08:38,797 | INFO     | [job] job monitor thread has finished
[2025-11-20 23:09:32] 2025-11-20 22:08:38,843 | INFO     | [data] control thread has finished
[2025-11-20 23:09:32] 2025-11-20 22:08:39,038 | INFO     | all payload control threads have been joined
[2025-11-20 23:09:32] 2025-11-20 22:08:39,071 | INFO     | [job] create_data_payload thread has finished
[2025-11-20 23:09:32] 2025-11-20 22:08:39,120 | INFO     | [payload] failed_post thread has finished
[2025-11-20 23:09:32] 2025-11-20 22:08:39,164 | INFO     | [payload] validate_post thread has finished
[2025-11-20 23:09:32] 2025-11-20 22:08:39,252 | INFO     | [payload] execute_payloads thread has finished
[2025-11-20 23:09:32] 2025-11-20 22:08:39,380 | INFO     | all job control threads have been joined
[2025-11-20 23:09:32] 2025-11-20 22:08:39,587 | INFO     | [payload] validate_pre thread has finished
[2025-11-20 23:09:32] 2025-11-20 22:08:39,716 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-20 23:09:32] 2025-11-20 22:08:39,790 | INFO     | [data] copytool_out thread has finished
[2025-11-20 23:09:32] 2025-11-20 22:08:39,867 | INFO     | [data] copytool_in thread has finished
[2025-11-20 23:09:32] 2025-11-20 22:08:40,044 | INFO     | [payload] control thread has finished
[2025-11-20 23:09:32] 2025-11-20 22:08:40,184 | INFO     | [job] validate thread has finished
[2025-11-20 23:09:32] 2025-11-20 22:08:40,386 | INFO     | [job] control thread has finished
[2025-11-20 23:09:32] 2025-11-20 22:08:40,508 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-20 23:09:32] 2025-11-20 22:08:40,722 | INFO     | [job] queue monitor thread has finished
[2025-11-20 23:09:32] 2025-11-20 22:08:44,517 | INFO     | [data] queue_monitor thread has finished
[2025-11-20 23:09:32] 2025-11-20 22:09:07,824 | INFO     | PID=8289 has CPU usage=2.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-11-20 23:09:32] 2025-11-20 22:09:07,825 | INFO     | .. there are 9 such processes running
[2025-11-20 23:09:32] 2025-11-20 22:09:07,826 | INFO     | found 0 job(s) in 20 queues
[2025-11-20 23:09:32] 2025-11-20 22:09:07,826 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-20 23:09:32] 2025-11-20 22:09:07,826 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-20 23:09:32] 2025-11-20 22:09:23,565 | INFO     | [monitor] cgroup control has ended
[2025-11-20 23:09:32] 2025-11-20 22:09:23,998 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140093318010688)>', '<ExcThread(monitor, started 140092857358080)>']
[2025-11-20 23:09:32] 2025-11-20 22:09:24,928 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-20 23:09:32] 2025-11-20 22:09:24,928 | INFO     | [monitor] control thread has ended
[2025-11-20 23:09:32] 2025-11-20 22:09:29,024 | INFO     | all workflow threads have been joined
[2025-11-20 23:09:32] 2025-11-20 22:09:29,024 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-20 23:09:32] 2025-11-20 22:09:29,024 | INFO     | traces error code: 0
[2025-11-20 23:09:32] 2025-11-20 22:09:29,025 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-20 23:09:32] 2025-11-20 22:09:29,325 [wrapper] ==== pilot stdout END ====
[2025-11-20 23:09:32] 2025-11-20 22:09:29,366 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-20 23:09:32] 2025-11-20 22:09:29,459 [wrapper] pilotpid: 8289
[2025-11-20 23:09:32] 2025-11-20 22:09:29,500 [wrapper] Pilot exit status: 0
[2025-11-20 23:09:32] 2025-11-20 22:09:29,933 [wrapper] pandaids: 6891570837
[2025-11-20 23:09:32] 2025-11-20 22:09:30,469 [wrapper] cleanup supervisor_pilot  9036 8290
[2025-11-20 23:09:32] 2025-11-20 22:09:30,568 [wrapper] Test setup, not cleaning
[2025-11-20 23:09:32] 2025-11-20 22:09:30,703 [wrapper] apfmon messages muted
[2025-11-20 23:09:32] 2025-11-20 22:09:30,820 [wrapper] ==== wrapper stdout END ====
[2025-11-20 23:09:32] 2025-11-20 22:09:30,936 [wrapper] ==== wrapper stderr END ====
[2025-11-20 23:09:32]  *** Error codes and diagnostics ***
[2025-11-20 23:09:32]     "exeErrorCode": 0,
[2025-11-20 23:09:32]     "exeErrorDiag": "",
[2025-11-20 23:09:32]     "pilotErrorCode": 0,
[2025-11-20 23:09:32]     "pilotErrorDiag": "",
[2025-11-20 23:09:32]  *** Listing of results directory ***
[2025-11-20 23:09:32] total 1338188
[2025-11-20 23:09:32] -rw-r--r--. 1 boinc boinc    576529 Nov 18 16:15 pilot3.tar.gz
[2025-11-20 23:09:32] -rw-r--r--. 1 boinc boinc      5112 Nov 18 16:39 queuedata.json
[2025-11-20 23:09:32] -rwx------. 1 boinc boinc     36292 Nov 18 16:40 runpilot2-wrapper.sh
[2025-11-20 23:09:32] -rw-r--r--. 1 boinc boinc       100 Nov 19 21:14 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-20 23:09:32] -rwxr-xr-x. 1 boinc boinc      7986 Nov 19 21:14 run_atlas
[2025-11-20 23:09:32] -rw-r--r--. 1 boinc boinc       105 Nov 19 21:14 job.xml
[2025-11-20 23:09:32] -rw-r--r--. 2 boinc boinc 408953060 Nov 19 21:14 EVNT.47493065._000253.pool.root.1
[2025-11-20 23:09:32] -rw-r--r--. 1 boinc boinc      6390 Nov 19 21:14 init_data.xml
[2025-11-20 23:09:32] drwxrwx--x. 2 boinc boinc        68 Nov 19 21:14 shared
[2025-11-20 23:09:32] -rw-r--r--. 2 boinc boinc    590103 Nov 19 21:14 input.tar.gz
[2025-11-20 23:09:32] -rw-r--r--. 2 boinc boinc     15120 Nov 19 21:14 start_atlas.sh
[2025-11-20 23:09:32] -rw-r--r--. 1 boinc boinc         0 Nov 19 21:14 boinc_lockfile
[2025-11-20 23:09:32] -rw-r--r--. 1 boinc boinc      2773 Nov 19 21:15 pandaJob.out
[2025-11-20 23:09:32] -rw-------. 1 boinc boinc    989443 Nov 19 21:18 agis_schedconf.cvmfs.json
[2025-11-20 23:09:32] drwx------. 5 boinc boinc      4096 Nov 19 21:18 pilot3
[2025-11-20 23:09:32] -rw-r--r--. 1 boinc boinc       533 Nov 20 22:49 boinc_task_state.xml
[2025-11-20 23:09:32] -rw-------. 1 boinc boinc 927537516 Nov 20 23:05 HITS.47493068._002526.pool.root.1
[2025-11-20 23:09:32] -rw-------. 1 boinc boinc      1031 Nov 20 23:06 memory_monitor_summary.json
[2025-11-20 23:09:32] -rw-------. 1 boinc boinc   1526164 Nov 20 23:06 agis_ddmendpoints.agis.ALL.json
[2025-11-20 23:09:32] -rw-------. 1 boinc boinc   2582335 Nov 20 23:06 log.47493068._002526.job.log.tgz.1
[2025-11-20 23:09:32] -rw-------. 1 boinc boinc      7947 Nov 20 23:08 heartbeat.json
[2025-11-20 23:09:32] -rw-------. 1 boinc boinc        95 Nov 20 23:09 pilot_heartbeat.json
[2025-11-20 23:09:32] -rw-r--r--. 1 boinc boinc      8192 Nov 20 23:09 boinc_mmap_file
[2025-11-20 23:09:32] -rw-r--r--. 1 boinc boinc        29 Nov 20 23:09 wrapper_checkpoint.txt
[2025-11-20 23:09:32] -rw-------. 1 boinc boinc      4883 Nov 20 23:09 pilotlog.txt
[2025-11-20 23:09:32] -rw-------. 1 boinc boinc  12371132 Nov 20 23:09 log.47493068._002526.job.log.1
[2025-11-20 23:09:32] -rw-------. 1 boinc boinc       353 Nov 20 23:09 output.list
[2025-11-20 23:09:32] -rw-r--r--. 1 boinc boinc       620 Nov 20 23:09 runtime_log
[2025-11-20 23:09:32] -rw-------. 1 boinc boinc  14970880 Nov 20 23:09 result.tar.gz
[2025-11-20 23:09:32] -rw-r--r--. 1 boinc boinc      8703 Nov 20 23:09 runtime_log.err
[2025-11-20 23:09:32] -rw-------. 1 boinc boinc       662 Nov 20 23:09 EpLLDmkzcf8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmhOFKDmYGDqOo.diag
[2025-11-20 23:09:32] -rw-r--r--. 1 boinc boinc     20853 Nov 20 23:09 stderr.txt
[2025-11-20 23:09:32] HITS file was successfully produced:
[2025-11-20 23:09:32] -rw-------. 1 boinc boinc 927537516 Nov 20 23:05 shared/HITS.pool.root.1
[2025-11-20 23:09:32]  *** Contents of shared directory: ***
[2025-11-20 23:09:32] total 1320388
[2025-11-20 23:09:32] -rw-r--r--. 2 boinc boinc 408953060 Nov 19 21:14 ATLAS.root_0
[2025-11-20 23:09:32] -rw-r--r--. 2 boinc boinc    590103 Nov 19 21:14 input.tar.gz
[2025-11-20 23:09:32] -rw-r--r--. 2 boinc boinc     15120 Nov 19 21:14 start_atlas.sh
[2025-11-20 23:09:32] -rw-------. 1 boinc boinc 927537516 Nov 20 23:05 HITS.pool.root.1
[2025-11-20 23:09:32] -rw-------. 1 boinc boinc  14970880 Nov 20 23:09 result.tar.gz
23:09:34 (4520): run_atlas exited; CPU time 344685.776487
23:09:34 (4520): called boinc_finish(0)

</stderr_txt>
]]>

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