Stderr output

<core_client_version>8.2.4</core_client_version>
<![CDATA[
<stderr_txt>
2025-11-25 05:51:49 (24632): vboxwrapper version 26210
2025-11-25 05:51:49 (24632): BOINC client version: 8.2.4
2025-11-25 05:51:49 (24632): Detected: VirtualBox VboxManage Interface (Version: 7.0.6)
2025-11-25 05:51:50 (24632): Successfully copied 'init_data.xml' to the shared directory.
2025-11-25 05:51:50 (24632): Create VM. (boinc_5044ce3e5255e9a1, slot#2)
2025-11-25 05:51:50 (24632): Setting Memory Size for VM. (4800MB)
2025-11-25 05:51:51 (24632): Setting CPU Count for VM. (8)
2025-11-25 05:51:51 (24632): Setting Chipset Options for VM.
2025-11-25 05:51:51 (24632): Setting Graphics Controller Options for VM. (Driver: VBoxVGA, 16MB)
2025-11-25 05:51:51 (24632): Setting Boot Options for VM.
2025-11-25 05:51:52 (24632): Setting Network Configuration for NAT. (Driver: virtio)
2025-11-25 05:51:52 (24632): Enabling VM Network Access.
2025-11-25 05:51:52 (24632): Disabling USB Support for VM.
2025-11-25 05:51:53 (24632): Disabling COM Port Support for VM.
2025-11-25 05:51:53 (24632): Disabling LPT Port Support for VM.
2025-11-25 05:51:53 (24632): Disabling Audio Support for VM.
2025-11-25 05:51:53 (24632): Disabling Clipboard Support for VM.
2025-11-25 05:51:54 (24632): Disabling Drag and Drop Support for VM.
2025-11-25 05:51:54 (24632): Adding storage controller(s) to VM.
2025-11-25 05:51:54 (24632): Adding virtual disk drive to VM. (ATLAS_vbox_3.03_image.vdi)
2025-11-25 05:51:55 (24632): Adding VirtualBox Guest Additions to VM.
2025-11-25 05:51:55 (24632): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-11-25 05:51:55 (24632): forwarding host port 53337 to guest port 80
2025-11-25 05:51:55 (24632): Enabling remote desktop for VM.
2025-11-25 05:51:56 (24632): Required extension pack not installed, remote desktop not enabled.
2025-11-25 05:51:56 (24632): Enabling shared directory for VM.
2025-11-25 05:51:56 (24632): Starting VM using VBoxManage interface. (boinc_5044ce3e5255e9a1, slot#2)
2025-11-25 05:52:03 (24632): Successfully started VM. (PID = '33672')
2025-11-25 05:52:03 (24632): Reporting VM Process ID to BOINC.
2025-11-25 05:52:03 (24632): Guest Log: BIOS: VirtualBox 7.0.6
2025-11-25 05:52:03 (24632): Guest Log: CPUID EDX: 0x178bfbff
2025-11-25 05:52:03 (24632): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-11-25 05:52:03 (24632): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-11-25 05:52:03 (24632): VM state change detected. (old = 'poweredoff', new = 'running')
2025-11-25 05:52:03 (24632): Detected: Web Application Enabled (http://localhost:53337)
2025-11-25 05:52:03 (24632): Preference change detected
2025-11-25 05:52:03 (24632): Setting CPU throttle for VM. (100%)
2025-11-25 05:52:03 (24632): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-11-25 05:52:05 (24632): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-11-25 05:52:05 (24632): Guest Log: BIOS: Booting from Hard Disk...
2025-11-25 05:52:08 (24632): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-11-25 05:52:08 (24632): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-11-25 05:52:08 (24632): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-11-25 05:52:08 (24632): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-11-25 05:52:08 (24632): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-11-25 05:52:08 (24632): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-11-25 05:52:08 (24632): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-11-25 05:52:08 (24632): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-11-25 05:52:08 (24632): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-11-25 05:52:08 (24632): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-11-25 05:52:08 (24632): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-11-25 05:52:08 (24632): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-11-25 05:52:08 (24632): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-11-25 05:52:08 (24632): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-11-25 05:52:08 (24632): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-11-25 05:52:08 (24632): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-11-25 05:52:08 (24632): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-11-25 05:52:08 (24632): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-11-25 05:52:08 (24632): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-11-25 05:52:08 (24632): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-11-25 05:52:08 (24632): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-11-25 05:52:08 (24632): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-11-25 05:52:08 (24632): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-11-25 05:52:08 (24632): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-11-25 05:52:08 (24632): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-11-25 05:52:08 (24632): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-11-25 05:52:08 (24632): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-11-25 05:52:08 (24632): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-11-25 05:52:08 (24632): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-11-25 05:52:08 (24632): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-11-25 05:52:08 (24632): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-11-25 05:52:08 (24632): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-11-25 05:52:14 (24632): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-11-25 05:52:14 (24632): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-11-25 05:52:20 (24632): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-11-25 05:52:20 (24632): Guest Log: 00:00:00.000200 main     Log opened 2025-11-25T05:52:18.468658000Z
2025-11-25 05:52:20 (24632): Guest Log: 00:00:00.000297 main     OS Product: Linux
2025-11-25 05:52:20 (24632): Guest Log: 00:00:00.000335 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-11-25 05:52:20 (24632): Guest Log: 00:00:00.000374 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-11-25 05:52:20 (24632): Guest Log: 00:00:00.000408 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-11-25 05:52:20 (24632): Guest Log: 00:00:00.000409 main     Process ID: 1369
2025-11-25 05:52:20 (24632): Guest Log: 00:00:00.000409 main     Package type: LINUX_64BITS_GENERIC
2025-11-25 05:52:20 (24632): Guest Log: 00:00:00.001221 main     5.2.32 r132073 started. Verbose level = 0
2025-11-25 05:52:20 (24632): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-11-25 05:52:20 (24632): Guest Log: [INFO] Mounting shared directory
2025-11-25 05:52:20 (24632): Guest Log: [INFO] Checking for init_data.xml
2025-11-25 05:52:28 (24632): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-11-25 05:52:28 (24632): Guest Log: [INFO] Detected branch: prod
2025-11-25 05:52:29 (24632): Guest Log: This is the prod version of the ATLAS job wrapper
2025-11-25 05:52:29 (24632): Guest Log: Copying input files
2025-11-25 05:52:30 (24632): Guest Log: 00:00:10.004945 timesync vgsvcTimeSyncWorker: Radical guest time change: 28 810 639 143 000ns (GuestNow=1 764 078 749 110 754 000 ns GuestLast=1 764 049 938 471 611 000 ns fSetTimeLastLoop=true )
2025-11-25 05:52:31 (24632): Guest Log: Copied input files into RunAtlas.
2025-11-25 05:52:31 (24632): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-11-25 05:52:31 (24632): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-11-25 05:52:31 (24632): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-11-25 05:52:31 (24632): Guest Log: Further information can be found at the LHC@home message board.
2025-11-25 05:52:41 (24632): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-11-25 05:52:41 (24632): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-11-25 05:52:41 (24632): Guest Log: 2.6.3.0 1653 0 30120 153284 4 1 3117639 4096000 0 65024 0 0 n/a 0 0 http://s1bnl-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2025-11-25 05:52:41 (24632): Guest Log: copied the webapp to /var/www
2025-11-25 05:52:41 (24632): Guest Log: ATHENA_PROC_NUMBER=8
2025-11-25 05:52:41 (24632): Guest Log: ATHENA_CORE_NUMBER=8
2025-11-25 05:52:42 (24632): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-11-25 05:52:42 (24632): Guest Log:  *** Starting ATLAS job. (PandaID=6891586316 taskID=47493068) ***
2025-11-25 07:32:05 (24632): Status Report: Elapsed Time: '6000.000000'
2025-11-25 07:32:05 (24632): Status Report: CPU Time: '41220.187500'
2025-11-25 09:12:08 (24632): Status Report: Elapsed Time: '12000.000000'
2025-11-25 09:12:08 (24632): Status Report: CPU Time: '86043.562500'
2025-11-25 10:52:11 (24632): Status Report: Elapsed Time: '18000.000000'
2025-11-25 10:52:11 (24632): Status Report: CPU Time: '131907.609375'
2025-11-25 12:32:14 (24632): Status Report: Elapsed Time: '24000.000000'
2025-11-25 12:32:14 (24632): Status Report: CPU Time: '177702.062500'
2025-11-25 14:12:17 (24632): Status Report: Elapsed Time: '30000.000000'
2025-11-25 14:12:17 (24632): Status Report: CPU Time: '223479.687500'
2025-11-25 15:52:22 (24632): Status Report: Elapsed Time: '36000.000000'
2025-11-25 15:52:22 (24632): Status Report: CPU Time: '269432.265625'
2025-11-25 17:18:55 (24632): Guest Log:  *** Job finished ***
2025-11-25 17:18:55 (24632): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-11-25 17:18:55 (24632): Guest Log: 2025-11-26 01:18:26,460 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
2025-11-25 17:18:55 (24632): Guest Log: 2025-11-26 01:18:26,460 | WARNING  | will wait for a maximum of 300 s for threads to finish
2025-11-25 17:18:55 (24632): Guest Log: 2025-11-26 01:18:32,873 | INFO     | [monitor] cgroup control has ended
2025-11-25 17:18:55 (24632): Guest Log: 2025-11-26 01:18:34,448 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140209348388672)>', '<ExcThread(monitor, started 140208326567680)>']
2025-11-25 17:18:55 (24632): Guest Log: 2025-11-26 01:18:34,584 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-11-25 17:18:55 (24632): Guest Log: 2025-11-26 01:18:34,584 | INFO     | [monitor] control thread has ended
2025-11-25 17:18:55 (24632): Guest Log: 2025-11-26 01:18:39,521 | INFO     | all workflow threads have been joined
2025-11-25 17:18:55 (24632): Guest Log: 2025-11-26 01:18:39,521 | INFO     | end of generic workflow (traces error code: 0)
2025-11-25 17:18:55 (24632): Guest Log: 2025-11-26 01:18:39,522 | INFO     | traces error code: 0
2025-11-25 17:18:55 (24632): Guest Log: 2025-11-26 01:18:39,522 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-11-25 17:18:55 (24632): Guest Log: 2025-11-26 01:18:39,650 [wrapper] ==== pilot stdout END ====
2025-11-25 17:18:55 (24632): Guest Log: 2025-11-26 01:18:39,656 [wrapper] ==== wrapper stdout RESUME ====
2025-11-25 17:18:55 (24632): Guest Log: 2025-11-26 01:18:39,663 [wrapper] pilotpid: 6091
2025-11-25 17:18:55 (24632): Guest Log: 2025-11-26 01:18:39,671 [wrapper] Pilot exit status: 0
2025-11-25 17:18:55 (24632): Guest Log: 2025-11-26 01:18:39,693 [wrapper] pandaids: 6891586316
2025-11-25 17:18:55 (24632): Guest Log: 2025-11-26 01:18:39,750 [wrapper] cleanup supervisor_pilot 26514 6092
2025-11-25 17:18:55 (24632): Guest Log: 2025-11-26 01:18:39,760 [wrapper] Test setup, not cleaning
2025-11-25 17:18:55 (24632): Guest Log: 2025-11-26 01:18:39,766 [wrapper] apfmon messages muted
2025-11-25 17:18:55 (24632): Guest Log: 2025-11-26 01:18:39,771 [wrapper] ==== wrapper stdout END ====
2025-11-25 17:18:55 (24632): Guest Log: 2025-11-26 01:18:39,778 [wrapper] ==== wrapper stderr END ====
2025-11-25 17:18:55 (24632): Guest Log:  *** Error codes and diagnostics ***
2025-11-25 17:18:55 (24632): Guest Log:     "exeErrorCode": 0,
2025-11-25 17:18:55 (24632): Guest Log:     "exeErrorDiag": "",
2025-11-25 17:18:55 (24632): Guest Log:     "pilotErrorCode": 0,
2025-11-25 17:18:55 (24632): Guest Log:     "pilotErrorDiag": "",
2025-11-25 17:18:55 (24632): Guest Log:  *** Listing of results directory ***
2025-11-25 17:18:55 (24632): Guest Log: total 912064
2025-11-25 17:18:55 (24632): Guest Log: -rw-r--r--. 1 atlas atlas    576529 Nov 18 17:24 pilot3.tar.gz
2025-11-25 17:18:55 (24632): Guest Log: -rw-r--r--. 1 atlas atlas      5112 Nov 18 17:25 queuedata.json
2025-11-25 17:18:55 (24632): Guest Log: -rwx------. 1 atlas atlas     36292 Nov 18 17:26 runpilot2-wrapper.sh
2025-11-25 17:18:55 (24632): Guest Log: -rwxr-xr-x. 1 atlas atlas     15120 Nov 25 13:52 start_atlas.sh
2025-11-25 17:18:55 (24632): Guest Log: -rwxr-xr-x. 1 atlas atlas    590100 Nov 25 13:52 input.tar.gz
2025-11-25 17:18:55 (24632): Guest Log: -rwxr-xr-x. 1 atlas atlas      8956 Nov 25 13:52 init_data.xml
2025-11-25 17:18:55 (24632): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Nov 25 13:52 EVNT.47493065._000481.pool.root.1 -> /data/./ATLAS.root_0
2025-11-25 17:18:55 (24632): Guest Log: -rw-r--r--. 1 atlas atlas      2773 Nov 25 13:52 pandaJob.out
2025-11-25 17:18:55 (24632): Guest Log: -rw-------. 1 atlas atlas    991909 Nov 25 13:53 agis_schedconf.cvmfs.json
2025-11-25 17:18:55 (24632): Guest Log: drwx------. 5 atlas atlas      4096 Nov 25 13:53 pilot3
2025-11-25 17:18:55 (24632): Guest Log: -rw-------. 1 atlas atlas 915523889 Nov 26 01:17 HITS.47493068._004806.pool.root.1
2025-11-25 17:18:55 (24632): Guest Log: -rw-------. 1 atlas atlas      1038 Nov 26 01:17 memory_monitor_summary.json
2025-11-25 17:18:55 (24632): Guest Log: -rw-------. 1 atlas atlas   1516240 Nov 26 01:17 agis_ddmendpoints.agis.ALL.json
2025-11-25 17:18:55 (24632): Guest Log: -rw-------. 1 atlas atlas   1914514 Nov 26 01:17 log.47493068._004806.job.log.tgz.1
2025-11-25 17:18:55 (24632): Guest Log: -rw-------. 1 atlas atlas      8640 Nov 26 01:17 heartbeat.json
2025-11-25 17:18:55 (24632): Guest Log: -rw-------. 1 atlas atlas        95 Nov 26 01:18 pilot_heartbeat.json
2025-11-25 17:18:55 (24632): Guest Log: -rw-------. 1 atlas atlas      4805 Nov 26 01:18 pilotlog.txt
2025-11-25 17:18:55 (24632): Guest Log: -rw-------. 1 atlas atlas   5376208 Nov 26 01:18 log.47493068._004806.job.log.1
2025-11-25 17:18:55 (24632): Guest Log: -rw-------. 1 atlas atlas       353 Nov 26 01:18 output.list
2025-11-25 17:18:55 (24632): Guest Log: -rw-r--r--. 1 atlas atlas       620 Nov 26 01:18 runtime_log
2025-11-25 17:18:55 (24632): Guest Log: -rw-------. 1 atlas atlas   7311360 Nov 26 01:18 result.tar.gz
2025-11-25 17:18:55 (24632): Guest Log: -rw-------. 1 atlas atlas       660 Nov 26 01:18 vodMDmReef8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm22FKDm7JKcUm.diag
2025-11-25 17:18:55 (24632): Guest Log: -rw-r--r--. 1 atlas atlas      8634 Nov 26 01:18 runtime_log.err
2025-11-25 17:18:55 (24632): Guest Log: Looking for outputfile HITS.47493068._004806.pool.root.1
2025-11-25 17:18:55 (24632): Guest Log: HITS file was successfully produced
2025-11-25 17:18:55 (24632): Guest Log: -rw-------. 1 atlas atlas 915523889 Nov 26 01:17 /home/atlas/RunAtlas/HITS.47493068._004806.pool.root.1
2025-11-25 17:19:00 (24632): Guest Log: Successfully finished the ATLAS job!
2025-11-25 17:19:00 (24632): Guest Log: Copying the results back to the shared directory!
2025-11-25 17:19:00 (24632): Guest Log:  *** Contents of shared directory: ***
2025-11-25 17:19:00 (24632): Guest Log: total 1301900
2025-11-25 17:19:00 (24632): Guest Log: -rwxrwxrwx. 1 root root 409685990 Nov 25 13:51 ATLAS.root_0
2025-11-25 17:19:00 (24632): Guest Log: -rwxrwxrwx. 1 root root 915523889 Nov 26  2025 HITS.pool.root.1
2025-11-25 17:19:00 (24632): Guest Log: -rwxrwxrwx. 1 root root      8956 Nov 25 13:51 init_data.xml
2025-11-25 17:19:00 (24632): Guest Log: -rwxrwxrwx. 1 root root    590100 Nov 18 18:53 input.tar.gz
2025-11-25 17:19:00 (24632): Guest Log: -rwxrwxrwx. 1 root root   7311360 Nov 26  2025 result.tar.gz
2025-11-25 17:19:00 (24632): Guest Log: -rwxrwxrwx. 1 root root     15120 Nov 18 18:53 start_atlas.sh
2025-11-25 17:19:00 (24632): Guest Log:  *** Success! Shutting down the machine. ***
2025-11-25 17:19:00 (24632): VM Completion File Detected.
2025-11-25 17:19:00 (24632): Powering off VM.
2025-11-25 17:19:01 (24632): Successfully stopped VM.
2025-11-25 17:19:01 (24632): Deregistering VM. (boinc_5044ce3e5255e9a1, slot#2)
2025-11-25 17:19:01 (24632): Removing network bandwidth throttle group from VM.
2025-11-25 17:19:01 (24632): Removing VM from VirtualBox.
2025-11-25 17:19:06 (24632): called boinc_finish(0)

</stderr_txt>
]]>

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