Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
21:36:38 (31577): wrapper (7.7.26015): starting
21:36:38 (31577): wrapper: running run_atlas (--nthreads 8)
[2025-11-19 21:36:38] Arguments: --nthreads 8
[2025-11-19 21:36:38] Threads: 8
[2025-11-19 21:36:38] Checking for CVMFS
[2025-11-19 21:36:38] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-19 21:36:39] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-19 21:36:39] Running cvmfs_config stat atlas.cern.ch
[2025-11-19 21:36:39] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-19 21:36:39] 2.11.2.0 10662 73504 92644 153056 3 236 19592150 25165825 3945 130560 3 22033706 99.891 12632161 2298 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-19 21:36:39] CVMFS is ok
[2025-11-19 21:36:39] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-19 21:36:39] Checking for apptainer binary...
[2025-11-19 21:36:39] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-19 21:36:39] Running /usr/bin/apptainer --version
[2025-11-19 21:36:39] apptainer version 1.3.2-1.el7
[2025-11-19 21:36:39] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-19 21:36:41] cg-vwn346.simple-grid.lan
[2025-11-19 21:36:41] apptainer works
[2025-11-19 21:36:41] Set ATHENA_PROC_NUMBER=8
[2025-11-19 21:36:41] Set ATHENA_CORE_NUMBER=8
[2025-11-19 21:36:41] Starting ATLAS job with PandaID=6891586340
[2025-11-19 21:36:41] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/10 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-20 22:26:58]  *** The last 200 lines of the pilot log: ***
[2025-11-20 22:26:58] 2025-11-20 21:26:18,110 | INFO     | monitor loop #5931: job 0:6891586340 is in state 'finished'
[2025-11-20 22:26:58] 2025-11-20 21:26:18,121 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-20 22:26:58] 2025-11-20 21:26:18,279 | INFO     | PID=5894 has CPU usage=14.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-20 22:26:58] 2025-11-20 21:26:18,279 | INFO     | .. there are 8 such processes running
[2025-11-20 22:26:58] 2025-11-20 21:26:19,280 | INFO     | time since job start (89344s) is within the limit (172800.0s)
[2025-11-20 22:26:58] 2025-11-20 21:26:20,465 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-20 22:26:58] 2025-11-20 21:26:20,466 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-11-20 22:26:58] 2025-11-20 21:26:20,468 | INFO     | using path: /var/lib/boinc/slots/10/PanDA_Pilot-6891586340/memory_monitor_summary.json (trf name=prmon)
[2025-11-20 22:26:58] 2025-11-20 21:26:20,469 | INFO     | extracted standard info from prmon json
[2025-11-20 22:26:58] 2025-11-20 21:26:20,469 | INFO     | extracted standard memory fields from prmon json
[2025-11-20 22:26:58] 2025-11-20 21:26:20,469 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-20 22:26:58] 2025-11-20 21:26:20,496 | INFO     | fitting pss+swap vs Time
[2025-11-20 22:26:58] 2025-11-20 21:26:20,499 | INFO     | sum of square deviations: 970985730662.6294
[2025-11-20 22:26:58] 2025-11-20 21:26:20,562 | INFO     | sum of deviations: 3494495502329.3315
[2025-11-20 22:26:58] 2025-11-20 21:26:20,563 | INFO     | mean x: 1763629360.0991113
[2025-11-20 22:26:58] 2025-11-20 21:26:20,563 | INFO     | mean y: 2854286.101161996
[2025-11-20 22:26:58] 2025-11-20 21:26:20,563 | INFO     | intersect: -6344298583.422977
[2025-11-20 22:26:58] 2025-11-20 21:26:20,565 | INFO     | chi2: 13.978212100652698
[2025-11-20 22:26:58] 2025-11-20 21:26:20,567 | INFO     | sum of square deviations: 961064816469.0681
[2025-11-20 22:26:58] 2025-11-20 21:26:20,625 | INFO     | sum of deviations: 3983628352651.8384
[2025-11-20 22:26:58] 2025-11-20 21:26:20,625 | INFO     | mean x: 1763629207.6028807
[2025-11-20 22:26:58] 2025-11-20 21:26:20,625 | INFO     | mean y: 2861804.037722908
[2025-11-20 22:26:58] 2025-11-20 21:26:20,625 | INFO     | intersect: -7307408215.817751
[2025-11-20 22:26:58] 2025-11-20 21:26:20,627 | INFO     | chi2: 10.786863268179115
[2025-11-20 22:26:58] 2025-11-20 21:26:20,628 | INFO     | current chi2=10.786863268179115 (change=22.830880011647313 %)
[2025-11-20 22:26:58] 2025-11-20 21:26:20,628 | INFO     | right removable region: 1457
[2025-11-20 22:26:58] 2025-11-20 21:26:20,630 | INFO     | sum of square deviations: 961063835589.0663
[2025-11-20 22:26:58] 2025-11-20 21:26:20,639 | INFO     | monitor loop #5932: job 0:6891586340 is in state 'finished'
[2025-11-20 22:26:58] 2025-11-20 21:26:20,639 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-20 22:26:58] 2025-11-20 21:26:20,695 | INFO     | sum of deviations: 2927638846158.3203
[2025-11-20 22:26:58] 2025-11-20 21:26:20,695 | INFO     | mean x: 1763629512.6028807
[2025-11-20 22:26:58] 2025-11-20 21:26:20,695 | INFO     | mean y: 2862997.9245541836
[2025-11-20 22:26:58] 2025-11-20 21:26:20,695 | INFO     | intersect: -5369589986.078041
[2025-11-20 22:26:58] 2025-11-20 21:26:20,697 | INFO     | chi2: 10.052491537306192
[2025-11-20 22:26:58] 2025-11-20 21:26:20,697 | INFO     | current chi2=10.052491537306192 (change=28.084568577716734 %)
[2025-11-20 22:26:58] 2025-11-20 21:26:20,699 | INFO     | sum of square deviations: 951209844435.6836
[2025-11-20 22:26:58] 2025-11-20 21:26:20,758 | INFO     | sum of deviations: 2569475704771.7827
[2025-11-20 22:26:58] 2025-11-20 21:26:20,759 | INFO     | mean x: 1763629665.1059875
[2025-11-20 22:26:58] 2025-11-20 21:26:20,759 | INFO     | mean y: 2868537.0598761183
[2025-11-20 22:26:58] 2025-11-20 21:26:20,759 | INFO     | intersect: -4761173386.195299
[2025-11-20 22:26:58] 2025-11-20 21:26:20,761 | INFO     | chi2: 8.379575909125494
[2025-11-20 22:26:58] 2025-11-20 21:26:20,761 | INFO     | current chi2=8.379575909125494 (change=16.64180091047355 %)
[2025-11-20 22:26:58] 2025-11-20 21:26:20,761 | INFO     | left removable region: 20
[2025-11-20 22:26:58] 2025-11-20 21:26:20,764 | INFO     | sum of square deviations: 920131858688.1842
[2025-11-20 22:26:58] 2025-11-20 21:26:20,826 | INFO     | sum of deviations: 2986072792078.7188
[2025-11-20 22:26:58] 2025-11-20 21:26:20,827 | INFO     | mean x: 1763629787.1113431
[2025-11-20 22:26:58] 2025-11-20 21:26:20,827 | INFO     | mean y: 2880614.5080027836
[2025-11-20 22:26:58] 2025-11-20 21:26:20,827 | INFO     | intersect: -5720567468.35794
[2025-11-20 22:26:58] 2025-11-20 21:26:20,829 | INFO     | chi2: 4.341886893253546
[2025-11-20 22:26:58] 2025-11-20 21:26:20,829 | INFO     | current memory leak: 3.25 B/s (using 1437 data points, chi2=4.34)
[2025-11-20 22:26:58] 2025-11-20 21:26:20,831 | INFO     | could have reported an average CPU frequency of 1999 MHz (49 samples)
[2025-11-20 22:26:58] 2025-11-20 21:26:20,832 | INFO     | ..............................
[2025-11-20 22:26:58] 2025-11-20 21:26:20,832 | INFO     | . Timing measurements:
[2025-11-20 22:26:58] 2025-11-20 21:26:20,832 | INFO     | . get job = 0 s
[2025-11-20 22:26:58] 2025-11-20 21:26:20,832 | INFO     | . initial setup = 5 s
[2025-11-20 22:26:58] 2025-11-20 21:26:20,832 | INFO     | . payload setup = 21 s
[2025-11-20 22:26:58] 2025-11-20 21:26:20,832 | INFO     | . stage-in = 0 s
[2025-11-20 22:26:58] 2025-11-20 21:26:20,832 | INFO     | . payload execution = 89248 s
[2025-11-20 22:26:58] 2025-11-20 21:26:20,832 | INFO     | . stage-out = 3 s
[2025-11-20 22:26:58] 2025-11-20 21:26:20,832 | INFO     | . log creation = 1 s
[2025-11-20 22:26:58] 2025-11-20 21:26:20,832 | INFO     | ..............................
[2025-11-20 22:26:58] 2025-11-20 21:26:20,964 | INFO     | 
[2025-11-20 22:26:58] 2025-11-20 21:26:20,964 | INFO     | job summary report
[2025-11-20 22:26:58] 2025-11-20 21:26:20,964 | INFO     | --------------------------------------------------
[2025-11-20 22:26:58] 2025-11-20 21:26:20,964 | INFO     | PanDA job id: 6891586340
[2025-11-20 22:26:58] 2025-11-20 21:26:20,964 | INFO     | task id: 47493068
[2025-11-20 22:26:58] 2025-11-20 21:26:20,964 | INFO     | errors: (none)
[2025-11-20 22:26:58] 2025-11-20 21:26:20,964 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-20 22:26:58] 2025-11-20 21:26:20,964 | INFO     | pilot state: finished 
[2025-11-20 22:26:58] 2025-11-20 21:26:20,965 | INFO     | transexitcode: 0
[2025-11-20 22:26:58] 2025-11-20 21:26:20,965 | INFO     | exeerrorcode: 0
[2025-11-20 22:26:58] 2025-11-20 21:26:20,965 | INFO     | exeerrordiag: 
[2025-11-20 22:26:58] 2025-11-20 21:26:20,965 | INFO     | exitcode: 0
[2025-11-20 22:26:58] 2025-11-20 21:26:20,965 | INFO     | exitmsg: OK
[2025-11-20 22:26:58] 2025-11-20 21:26:20,965 | INFO     | cpuconsumptiontime: 336093 s
[2025-11-20 22:26:58] 2025-11-20 21:26:20,965 | INFO     | nevents: 1000
[2025-11-20 22:26:58] 2025-11-20 21:26:20,965 | INFO     | neventsw: 0
[2025-11-20 22:26:58] 2025-11-20 21:26:20,965 | INFO     | pid: 19738
[2025-11-20 22:26:58] 2025-11-20 21:26:20,965 | INFO     | pgrp: 19738
[2025-11-20 22:26:58] 2025-11-20 21:26:20,965 | INFO     | corecount: 8
[2025-11-20 22:26:58] 2025-11-20 21:26:20,965 | INFO     | event service: False
[2025-11-20 22:26:58] 2025-11-20 21:26:20,965 | INFO     | sizes: {0: 2297029, 1: 2297228, 12: 2297228, 23: 2297256, 26: 2297546, 34: 2297574, 89273: 2361144, 89277: 2371736, 89278: 2371792, 89297: 2372038}
[2025-11-20 22:26:58] 2025-11-20 21:26:20,966 | INFO     | --------------------------------------------------
[2025-11-20 22:26:58] 2025-11-20 21:26:20,966 | INFO     | 
[2025-11-20 22:26:58] 2025-11-20 21:26:20,966 | INFO     | executing command: ls -lF /var/lib/boinc/slots/10
[2025-11-20 22:26:58] 2025-11-20 21:26:21,021 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-20 22:26:58] 2025-11-20 21:26:21,022 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-20 22:26:58] 2025-11-20 21:26:21,022 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-20 22:26:58] 2025-11-20 21:26:21,022 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-20 22:26:58] 2025-11-20 21:26:21,022 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-20 22:26:58] 2025-11-20 21:26:21,022 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-20 22:26:58] 2025-11-20 21:26:21,023 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-20 22:26:58] 2025-11-20 21:26:21,023 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-20 22:26:58] 2025-11-20 21:26:21,023 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-20 22:26:58] 2025-11-20 21:26:21,023 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-20 22:26:58] 2025-11-20 21:26:21,023 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-20 22:26:58] 2025-11-20 21:26:21,023 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-20 22:26:58] 2025-11-20 21:26:21,023 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-20 22:26:58] 2025-11-20 21:26:21,023 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-20 22:26:58] 2025-11-20 21:26:21,023 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-20 22:26:58] 2025-11-20 21:26:21,024 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-20 22:26:58] 2025-11-20 21:26:21,024 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-20 22:26:58] 2025-11-20 21:26:21,024 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-20 22:26:58] 2025-11-20 21:26:21,024 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-20 22:26:58] 2025-11-20 21:26:21,024 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-20 22:26:58] 2025-11-20 21:26:21,024 | INFO     | job 6891586340 has completed (purged errors)
[2025-11-20 22:26:58] 2025-11-20 21:26:21,024 | INFO     | overall cleanup function is called
[2025-11-20 22:26:58] 2025-11-20 21:26:22,042 | INFO     | --- collectZombieJob: --- 10, [19738]
[2025-11-20 22:26:58] 2025-11-20 21:26:22,042 | INFO     | zombie collector waiting for pid 19738
[2025-11-20 22:26:58] 2025-11-20 21:26:22,042 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-20 22:26:58] 2025-11-20 21:26:22,042 | INFO     | collected zombie processes
[2025-11-20 22:26:58] 2025-11-20 21:26:22,042 | INFO     | will attempt to kill all subprocesses of pid=19738
[2025-11-20 22:26:58] 2025-11-20 21:26:22,154 | INFO     | process IDs to be killed: [19738] (in reverse order)
[2025-11-20 22:26:58] 2025-11-20 21:26:22,295 | WARNING  | found no corresponding commands to process id(s)
[2025-11-20 22:26:58] 2025-11-20 21:26:22,295 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-20 22:26:58] 2025-11-20 21:26:22,298 | INFO     | did not find any defunct processes belonging to 19738
[2025-11-20 22:26:58] 2025-11-20 21:26:22,301 | INFO     | did not find any defunct processes belonging to 19738
[2025-11-20 22:26:58] 2025-11-20 21:26:22,318 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-20 22:26:58] 2025-11-20 21:26:22,318 | INFO     | ready for new job
[2025-11-20 22:26:58] 2025-11-20 21:26:22,318 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-20 22:26:58] 2025-11-20 21:26:22,325 | INFO     | ***************************************
[2025-11-20 22:26:58] 2025-11-20 21:26:22,325 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-20 22:26:58] 2025-11-20 21:26:22,325 | INFO     | ***************************************
[2025-11-20 22:26:58] 2025-11-20 21:26:22,325 | INFO     | 
[2025-11-20 22:26:58] 2025-11-20 21:26:22,326 | INFO     | pilot is running in a VM
[2025-11-20 22:26:58] 2025-11-20 21:26:22,326 | INFO     | architecture information:
[2025-11-20 22:26:58] 2025-11-20 21:26:22,326 | INFO     | executing command: cat /etc/os-release
[2025-11-20 22:26:58] 2025-11-20 21:26:22,364 | INFO     | cat /etc/os-release:
[2025-11-20 22:26:58] NAME="CentOS Linux"
[2025-11-20 22:26:58] VERSION="7 (Core)"
[2025-11-20 22:26:58] ID="centos"
[2025-11-20 22:26:58] ID_LIKE="rhel fedora"
[2025-11-20 22:26:58] VERSION_ID="7"
[2025-11-20 22:26:58] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-20 22:26:58] ANSI_COLOR="0;31"
[2025-11-20 22:26:58] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-20 22:26:58] HOME_URL="https://www.centos.org/"
[2025-11-20 22:26:58] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-20 22:26:58] 
[2025-11-20 22:26:58] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-20 22:26:58] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-20 22:26:58] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-20 22:26:58] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-20 22:26:58] 
[2025-11-20 22:26:58] 2025-11-20 21:26:22,364 | INFO     | ***************************************
[2025-11-20 22:26:58] 2025-11-20 21:26:22,868 | INFO     | executing command: df -mP /var/lib/boinc/slots/10
[2025-11-20 22:26:58] 2025-11-20 21:26:23,008 | INFO     | sufficient remaining disk space (493476642816 B)
[2025-11-20 22:26:58] 2025-11-20 21:26:23,009 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-20 22:26:58] 2025-11-20 21:26:23,009 | INFO     | current server update state: UPDATING_FINAL
[2025-11-20 22:26:58] 2025-11-20 21:26:23,009 | INFO     | update_server=False
[2025-11-20 22:26:58] 2025-11-20 21:26:23,009 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-20 22:26:58] 2025-11-20 21:26:23,144 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-20 22:26:58] 2025-11-20 21:26:23,144 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-20 22:26:58] 2025-11-20 21:26:23,144 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-20 22:26:58] 2025-11-20 21:26:23,144 | INFO     | will abort loop
[2025-11-20 22:26:58] 2025-11-20 21:26:23,171 | INFO     | all payload control threads have been joined
[2025-11-20 22:26:58] 2025-11-20 21:26:23,499 | INFO     | all data control threads have been joined
[2025-11-20 22:26:58] 2025-11-20 21:26:23,765 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-20 22:26:58] 2025-11-20 21:26:24,015 | INFO     | [job] retrieve thread has finished
[2025-11-20 22:26:58] 2025-11-20 21:26:24,150 | INFO     | [job] job monitor thread has finished
[2025-11-20 22:26:58] 2025-11-20 21:26:24,177 | INFO     | [payload] control thread has finished
[2025-11-20 22:26:58] 2025-11-20 21:26:24,504 | INFO     | [data] control thread has finished
[2025-11-20 22:26:58] 2025-11-20 21:26:24,604 | INFO     | all job control threads have been joined
[2025-11-20 22:26:58] 2025-11-20 21:26:24,704 | INFO     | [payload] execute_payloads thread has finished
[2025-11-20 22:26:58] 2025-11-20 21:26:25,160 | INFO     | [payload] validate_pre thread has finished
[2025-11-20 22:26:58] 2025-11-20 21:26:25,194 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-20 22:26:58] 2025-11-20 21:26:25,222 | INFO     | [payload] validate_post thread has finished
[2025-11-20 22:26:58] 2025-11-20 21:26:25,294 | INFO     | [data] copytool_in thread has finished
[2025-11-20 22:26:58] 2025-11-20 21:26:25,439 | INFO     | [job] validate thread has finished
[2025-11-20 22:26:58] 2025-11-20 21:26:25,469 | INFO     | [job] create_data_payload thread has finished
[2025-11-20 22:26:58] 2025-11-20 21:26:25,554 | INFO     | [payload] failed_post thread has finished
[2025-11-20 22:26:58] 2025-11-20 21:26:25,610 | INFO     | [job] control thread has finished
[2025-11-20 22:26:58] 2025-11-20 21:26:25,772 | INFO     | [data] copytool_out thread has finished
[2025-11-20 22:26:58] 2025-11-20 21:26:25,977 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-20 22:26:58] 2025-11-20 21:26:26,013 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-20 22:26:58] 2025-11-20 21:26:26,983 | INFO     | [job] queue monitor thread has finished
[2025-11-20 22:26:58] 2025-11-20 21:26:30,021 | INFO     | [data] queue_monitor thread has finished
[2025-11-20 22:26:58] 2025-11-20 21:26:50,999 | INFO     | [monitor] cgroup control has ended
[2025-11-20 22:26:58] 2025-11-20 21:26:52,435 | INFO     | PID=5894 has CPU usage=2.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-11-20 22:26:58] 2025-11-20 21:26:52,436 | INFO     | .. there are 9 such processes running
[2025-11-20 22:26:58] 2025-11-20 21:26:52,436 | INFO     | found 0 job(s) in 20 queues
[2025-11-20 22:26:58] 2025-11-20 21:26:52,436 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-20 22:26:58] 2025-11-20 21:26:52,436 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-20 22:26:58] 2025-11-20 21:26:53,049 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140285555857216)>', '<ExcThread(monitor, started 140284872603392)>']
[2025-11-20 22:26:58] 2025-11-20 21:26:53,441 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-20 22:26:58] 2025-11-20 21:26:53,442 | INFO     | [monitor] control thread has ended
[2025-11-20 22:26:58] 2025-11-20 21:26:58,075 | INFO     | all workflow threads have been joined
[2025-11-20 22:26:58] 2025-11-20 21:26:58,075 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-20 22:26:58] 2025-11-20 21:26:58,075 | INFO     | traces error code: 0
[2025-11-20 22:26:58] 2025-11-20 21:26:58,076 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-20 22:26:58] 2025-11-20 21:26:58,307 [wrapper] ==== pilot stdout END ====
[2025-11-20 22:26:58] 2025-11-20 21:26:58,311 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-20 22:26:58] 2025-11-20 21:26:58,318 [wrapper] pilotpid: 5894
[2025-11-20 22:26:58] 2025-11-20 21:26:58,322 [wrapper] Pilot exit status: 0
[2025-11-20 22:26:58] 2025-11-20 21:26:58,342 [wrapper] pandaids: 6891586340
[2025-11-20 22:26:58] 2025-11-20 21:26:58,385 [wrapper] cleanup supervisor_pilot 28287 5895
[2025-11-20 22:26:58] 2025-11-20 21:26:58,394 [wrapper] Test setup, not cleaning
[2025-11-20 22:26:58] 2025-11-20 21:26:58,397 [wrapper] apfmon messages muted
[2025-11-20 22:26:58] 2025-11-20 21:26:58,401 [wrapper] ==== wrapper stdout END ====
[2025-11-20 22:26:58] 2025-11-20 21:26:58,405 [wrapper] ==== wrapper stderr END ====
[2025-11-20 22:26:58]  *** Error codes and diagnostics ***
[2025-11-20 22:26:58]     "exeErrorCode": 0,
[2025-11-20 22:26:58]     "exeErrorDiag": "",
[2025-11-20 22:26:58]     "pilotErrorCode": 0,
[2025-11-20 22:26:58]     "pilotErrorDiag": "",
[2025-11-20 22:26:58]  *** Listing of results directory ***
[2025-11-20 22:26:58] total 1323104
[2025-11-20 22:26:58] -rwx------. 1 boinc boinc     36292 Nov 18 18:24 runpilot2-wrapper.sh
[2025-11-20 22:26:58] -rw-r--r--. 1 boinc boinc      5112 Nov 18 18:24 queuedata.json
[2025-11-20 22:26:58] -rw-r--r--. 1 boinc boinc    576529 Nov 18 18:24 pilot3.tar.gz
[2025-11-20 22:26:58] -rw-r--r--. 1 boinc boinc       100 Nov 19 21:36 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-20 22:26:58] -rwxr-xr-x. 1 boinc boinc      7986 Nov 19 21:36 run_atlas
[2025-11-20 22:26:58] -rw-r--r--. 1 boinc boinc       105 Nov 19 21:36 job.xml
[2025-11-20 22:26:58] -rw-r--r--. 1 boinc boinc      6389 Nov 19 21:36 init_data.xml
[2025-11-20 22:26:58] -rw-r--r--. 2 boinc boinc 409886522 Nov 19 21:36 EVNT.47493065._000483.pool.root.1
[2025-11-20 22:26:58] -rw-r--r--. 2 boinc boinc     15120 Nov 19 21:36 start_atlas.sh
[2025-11-20 22:26:58] drwxrwx--x. 2 boinc boinc        68 Nov 19 21:36 shared
[2025-11-20 22:26:58] -rw-r--r--. 2 boinc boinc    590087 Nov 19 21:36 input.tar.gz
[2025-11-20 22:26:58] -rw-r--r--. 1 boinc boinc         0 Nov 19 21:36 boinc_lockfile
[2025-11-20 22:26:58] -rw-r--r--. 1 boinc boinc      2772 Nov 19 21:36 pandaJob.out
[2025-11-20 22:26:58] -rw-------. 1 boinc boinc    989443 Nov 19 21:37 agis_schedconf.cvmfs.json
[2025-11-20 22:26:58] drwx------. 5 boinc boinc      4096 Nov 19 21:37 pilot3
[2025-11-20 22:26:58] -rw-r--r--. 1 boinc boinc       533 Nov 20 22:03 boinc_task_state.xml
[2025-11-20 22:26:58] -rw-------. 1 boinc boinc 912206196 Nov 20 22:25 HITS.47493068._004830.pool.root.1
[2025-11-20 22:26:58] -rw-------. 1 boinc boinc      1035 Nov 20 22:25 memory_monitor_summary.json
[2025-11-20 22:26:58] -rw-------. 1 boinc boinc   1526164 Nov 20 22:25 agis_ddmendpoints.agis.ALL.json
[2025-11-20 22:26:58] -rw-------. 1 boinc boinc   2532865 Nov 20 22:25 log.47493068._004830.job.log.tgz.1
[2025-11-20 22:26:58] -rw-------. 1 boinc boinc        95 Nov 20 22:26 pilot_heartbeat.json
[2025-11-20 22:26:58] -rw-------. 1 boinc boinc      8628 Nov 20 22:26 heartbeat.json
[2025-11-20 22:26:58] -rw-r--r--. 1 boinc boinc      8192 Nov 20 22:26 boinc_mmap_file
[2025-11-20 22:26:58] -rw-r--r--. 1 boinc boinc        29 Nov 20 22:26 wrapper_checkpoint.txt
[2025-11-20 22:26:58] -rw-------. 1 boinc boinc      5070 Nov 20 22:26 pilotlog.txt
[2025-11-20 22:26:58] -rw-------. 1 boinc boinc  11893239 Nov 20 22:26 log.47493068._004830.job.log.1
[2025-11-20 22:26:58] -rw-------. 1 boinc boinc       353 Nov 20 22:26 output.list
[2025-11-20 22:26:58] -rw-r--r--. 1 boinc boinc       620 Nov 20 22:26 runtime_log
[2025-11-20 22:26:58] -rw-------. 1 boinc boinc  14448640 Nov 20 22:26 result.tar.gz
[2025-11-20 22:26:58] -rw-------. 1 boinc boinc       662 Nov 20 22:26 WCwMDmTcef8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmk1FKDmuQOK8n.diag
[2025-11-20 22:26:58] -rw-r--r--. 1 boinc boinc      8717 Nov 20 22:26 runtime_log.err
[2025-11-20 22:26:58] -rw-r--r--. 1 boinc boinc     21261 Nov 20 22:26 stderr.txt
[2025-11-20 22:26:58] HITS file was successfully produced:
[2025-11-20 22:26:58] -rw-------. 1 boinc boinc 912206196 Nov 20 22:25 shared/HITS.pool.root.1
[2025-11-20 22:26:58]  *** Contents of shared directory: ***
[2025-11-20 22:26:58] total 1305816
[2025-11-20 22:26:58] -rw-r--r--. 2 boinc boinc 409886522 Nov 19 21:36 ATLAS.root_0
[2025-11-20 22:26:58] -rw-r--r--. 2 boinc boinc     15120 Nov 19 21:36 start_atlas.sh
[2025-11-20 22:26:58] -rw-r--r--. 2 boinc boinc    590087 Nov 19 21:36 input.tar.gz
[2025-11-20 22:26:58] -rw-------. 1 boinc boinc 912206196 Nov 20 22:25 HITS.pool.root.1
[2025-11-20 22:26:58] -rw-------. 1 boinc boinc  14448640 Nov 20 22:26 result.tar.gz
22:26:59 (31577): run_atlas exited; CPU time 336742.658406
22:26:59 (31577): called boinc_finish(0)

</stderr_txt>
]]>

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