Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
11:08:17 (152163): wrapper (7.7.26015): starting
11:08:17 (152163): wrapper: running run_atlas (--nthreads 8)
[2025-11-18 11:08:17] Arguments: --nthreads 8
[2025-11-18 11:08:17] Threads: 8
[2025-11-18 11:08:17] Checking for CVMFS
[2025-11-18 11:08:17] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-18 11:08:17] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-18 11:08:17] Running cvmfs_config stat atlas.cern.ch
[2025-11-18 11:08:17] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-18 11:08:17] 2.11.3.0 733561 17266 159916 153010 0 565 34762392 45568000 11243 130560 0 110832720 99.782 82740316 21375 http://cvmfs-s1bnl.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.164:3129 1
[2025-11-18 11:08:17] CVMFS is ok
[2025-11-18 11:08:17] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-18 11:08:17] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-18 11:08:17] Further information can be found at the LHC@home message board.
[2025-11-18 11:08:17] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-18 11:08:17] Checking for apptainer binary...
[2025-11-18 11:08:17] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-18 11:08:17] Running /usr/bin/apptainer --version
[2025-11-18 11:08:17] apptainer version 1.4.1-1.el9
[2025-11-18 11:08:17] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-18 11:08:18] wns0024.triumf.lcg
[2025-11-18 11:08:18] apptainer works
[2025-11-18 11:08:18] Set ATHENA_PROC_NUMBER=8
[2025-11-18 11:08:18] Set ATHENA_CORE_NUMBER=8
[2025-11-18 11:08:18] Starting ATLAS job with PandaID=6891584951
[2025-11-18 11:08:18] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-18 11:13:44]  *** The last 200 lines of the pilot log: ***
[2025-11-18 11:13:44] 2025-11-18 19:13:08,715 | INFO     | could have reported an average CPU frequency of 2095 MHz (4 samples)
[2025-11-18 11:13:44] 2025-11-18 19:13:08,715 | INFO     | ..............................
[2025-11-18 11:13:44] 2025-11-18 19:13:08,715 | INFO     | . Timing measurements:
[2025-11-18 11:13:44] 2025-11-18 19:13:08,715 | INFO     | . get job = 0 s
[2025-11-18 11:13:44] 2025-11-18 19:13:08,715 | INFO     | . initial setup = 3 s
[2025-11-18 11:13:44] 2025-11-18 19:13:08,715 | INFO     | . payload setup = 10 s
[2025-11-18 11:13:44] 2025-11-18 19:13:08,715 | INFO     | . stage-in = 0 s
[2025-11-18 11:13:44] 2025-11-18 19:13:08,715 | INFO     | . payload execution = 100 s
[2025-11-18 11:13:44] 2025-11-18 19:13:08,715 | INFO     | . stage-out = 0 s
[2025-11-18 11:13:44] 2025-11-18 19:13:08,715 | INFO     | . log creation = 0 s
[2025-11-18 11:13:44] 2025-11-18 19:13:08,716 | INFO     | ..............................
[2025-11-18 11:13:44] 2025-11-18 19:13:08,716 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-18 11:13:44] 2025-11-18 19:13:08,716 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6891584951/pilotlog.txt
[2025-11-18 11:13:44] 2025-11-18 19:13:08,728 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2025-11-18 11:13:44] - Log from pilotlog.txt -
[2025-11-18 11:13:44] 2025-11-18 19:13:08,712 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6891584951/memory_monitor_summary.json (trf name=prmon)
[2025-11-18 11:13:44] 2025-11-18 19:13:08,713 | INFO     | extracted standard info from prmon json
[2025-11-18 11:13:44] 2025-11-18 19:13:08,713 | INFO     | extracted standard memory fields from prmon json
[2025-11-18 11:13:44] 2025-11-18 19:13:08,713 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-18 11:13:44] 2025-11-18 19:13:08,713 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-18 11:13:44] 2025-11-18 19:13:08,713 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-18 11:13:44] 2025-11-18 19:13:08,714 | WARNING  | wrong length of table data, x=[1763492959.0, 1763493020.0], y=[968.0, 947386.0] (must be same and length>=4)
[2025-11-18 11:13:44] 2025-11-18 19:13:08,715 | INFO     | could have reported an average CPU frequency of 2095 MHz (4 samples)
[2025-11-18 11:13:44] 2025-11-18 19:13:08,715 | INFO     | ..............................
[2025-11-18 11:13:44] 2025-11-18 19:13:08,715 | INFO     | . Timing measurements:
[2025-11-18 11:13:44] 2025-11-18 19:13:08,715 | INFO     | . get job = 0 s
[2025-11-18 11:13:44] 2025-11-18 19:13:08,715 | INFO     | . initial setup = 3 s
[2025-11-18 11:13:44] 2025-11-18 19:13:08,715 | INFO     | . payload setup = 10 s
[2025-11-18 11:13:44] 2025-11-18 19:13:08,715 | INFO     | . stage-in = 0 s
[2025-11-18 11:13:44] 2025-11-18 19:13:08,715 | INFO     | . payload execution = 100 s
[2025-11-18 11:13:44] 2025-11-18 19:13:08,715 | INFO     | . stage-out = 0 s
[2025-11-18 11:13:44] 2025-11-18 19:13:08,715 | INFO     | . log creation = 0 s
[2025-11-18 11:13:44] 2025-11-18 19:13:08,716 | INFO     | ..............................
[2025-11-18 11:13:44] 2025-11-18 19:13:08,716 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-18 11:13:44] 2025-11-18 19:13:08,716 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6891584951/pilotlog.txt
[2025-11-18 11:13:44] 2025-11-18 19:13:08,728 | WARNING  | 
[2025-11-18 11:13:44] [begin log extracts]
[2025-11-18 11:13:44] - Log from pilotlog.txt -
[2025-11-18 11:13:44] 2025-11-18 19:13:08,712 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6891584951/memory_monitor_summary.json (trf name=prmon)
[2025-11-18 11:13:44] 2025-11-18 19:13:08,713 | INFO     | extracted standard info from prmon json
[2025-11-18 11:13:44] 2025-11-18 19:13:08,713 | INFO     | extracted standard memory fields from prmon json
[2025-11-18 11:13:44] 2025-11-18 19:13:08,713 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-18 11:13:44] 2025-11-18 19:13:08,713 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-18 11:13:44] 2025-11-18 19:13:08,713 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-18 11:13:44] 2025-11-18 19:13:08,714 | WARNING  | wrong length of table data, x=[1763492959.0, 1763493020.0], y=[968.0, 947386.0] (must be same and length>=4)
[2025-11-18 11:13:44] 2025-11-18 19:13:08,715 | INFO     | could have reported an average CPU frequency of 2095 MHz (4 samples)
[2025-11-18 11:13:44] 2025-11-18 19:13:08,715 | INFO     | ..............................
[2025-11-18 11:13:44] 2025-11-18 19:13:08,715 | INFO     | . Timing measurements:
[2025-11-18 11:13:44] 2025-11-18 19:13:08,715 | INFO     | . get job = 0 s
[2025-11-18 11:13:44] 2025-11-18 19:13:08,715 | INFO     | . initial setup = 3 s
[2025-11-18 11:13:44] 2025-11-18 19:13:08,715 | INFO     | . payload setup = 10 s
[2025-11-18 11:13:44] 2025-11-18 19:13:08,715 | INFO     | . stage-in = 0 s
[2025-11-18 11:13:44] 2025-11-18 19:13:08,715 | INFO     | . payload execution = 100 s
[2025-11-18 11:13:44] 2025-11-18 19:13:08,715 | INFO     | . stage-out = 0 s
[2025-11-18 11:13:44] 2025-11-18 19:13:08,715 | INFO     | . log creation = 0 s
[2025-11-18 11:13:44] 2025-11-18 19:13:08,716 | INFO     | ..............................
[2025-11-18 11:13:44] 2025-11-18 19:13:08,716 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-18 11:13:44] 2025-11-18 19:13:08,716 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6891584951/pilotlog.txt
[2025-11-18 11:13:44] [end log extracts]
[2025-11-18 11:13:44] 2025-11-18 19:13:08,728 | WARNING  | pilotErrorCodes = [1305, 1165] (will report primary/first error code)
[2025-11-18 11:13:44] 2025-11-18 19:13:08,729 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return c
[2025-11-18 11:13:44] 2025-11-18 19:13:08,804 | INFO     | 
[2025-11-18 11:13:44] 2025-11-18 19:13:08,805 | INFO     | job summary report
[2025-11-18 11:13:44] 2025-11-18 19:13:08,805 | INFO     | --------------------------------------------------
[2025-11-18 11:13:44] 2025-11-18 19:13:08,805 | INFO     | PanDA job id: 6891584951
[2025-11-18 11:13:44] 2025-11-18 19:13:08,805 | INFO     | task id: 47493068
[2025-11-18 11:13:44] 2025-11-18 19:13:08,805 | INFO     | error 1/2: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2025-11-18 11:10:47,505 CRITICAL Transform executor raised TransformValidationExceptio
[2025-11-18 11:13:44] 2025-11-18 19:13:08,805 | INFO     | error 2/2: 1165: Local output file is missing
[2025-11-18 11:13:44] 2025-11-18 19:13:08,805 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-18 11:13:44] 2025-11-18 19:13:08,805 | INFO     | pilot state: failed 
[2025-11-18 11:13:44] 2025-11-18 19:13:08,805 | INFO     | transexitcode: 65
[2025-11-18 11:13:44] 2025-11-18 19:13:08,805 | INFO     | exeerrorcode: 65
[2025-11-18 11:13:44] 2025-11-18 19:13:08,805 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: "IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFL
[2025-11-18 11:13:44] 2025-11-18 19:13:08,806 | INFO     | exitcode: 65
[2025-11-18 11:13:44] 2025-11-18 19:13:08,806 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: "IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 
[2025-11-18 11:13:44] 2025-11-18 19:13:08,806 | INFO     | cpuconsumptiontime: 52 s
[2025-11-18 11:13:44] 2025-11-18 19:13:08,806 | INFO     | nevents: 0
[2025-11-18 11:13:44] 2025-11-18 19:13:08,806 | INFO     | neventsw: 0
[2025-11-18 11:13:44] 2025-11-18 19:13:08,806 | INFO     | pid: 163343
[2025-11-18 11:13:44] 2025-11-18 19:13:08,806 | INFO     | pgrp: 163343
[2025-11-18 11:13:44] 2025-11-18 19:13:08,806 | INFO     | corecount: 8
[2025-11-18 11:13:44] 2025-11-18 19:13:08,806 | INFO     | event service: False
[2025-11-18 11:13:44] 2025-11-18 19:13:08,806 | INFO     | sizes: {0: 2297026, 1: 2297225, 10: 2297487, 12: 2297515, 114: 2322895, 115: 2327185, 116: 2327341, 249: 2327535}
[2025-11-18 11:13:44] 2025-11-18 19:13:08,806 | INFO     | --------------------------------------------------
[2025-11-18 11:13:44] 2025-11-18 19:13:08,806 | INFO     | 
[2025-11-18 11:13:44] 2025-11-18 19:13:08,806 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2025-11-18 11:13:44] 2025-11-18 19:13:08,995 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-18 11:13:44] 2025-11-18 19:13:08,996 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-18 11:13:44] 2025-11-18 19:13:08,996 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-18 11:13:44] 2025-11-18 19:13:08,996 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-18 11:13:44] 2025-11-18 19:13:08,996 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-18 11:13:44] 2025-11-18 19:13:08,996 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-18 11:13:44] 2025-11-18 19:13:08,996 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-18 11:13:44] 2025-11-18 19:13:08,996 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-18 11:13:44] 2025-11-18 19:13:08,996 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-18 11:13:44] 2025-11-18 19:13:08,996 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-18 11:13:44] 2025-11-18 19:13:08,996 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-18 11:13:44] 2025-11-18 19:13:08,997 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-18 11:13:44] 2025-11-18 19:13:08,997 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-18 11:13:44] 2025-11-18 19:13:08,997 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-18 11:13:44] 2025-11-18 19:13:08,997 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-18 11:13:44] 2025-11-18 19:13:08,997 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-18 11:13:44] 2025-11-18 19:13:08,997 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-18 11:13:44] 2025-11-18 19:13:08,997 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-18 11:13:44] 2025-11-18 19:13:08,997 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-18 11:13:44] 2025-11-18 19:13:08,997 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-18 11:13:44] 2025-11-18 19:13:08,997 | INFO     | job 6891584951 has completed (purged errors)
[2025-11-18 11:13:44] 2025-11-18 19:13:08,997 | INFO     | overall cleanup function is called
[2025-11-18 11:13:44] 2025-11-18 19:13:09,235 | INFO     | PID=155843 has CPU usage=1.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-18 11:13:44] 2025-11-18 19:13:09,235 | INFO     | .. there are 19 such processes running
[2025-11-18 11:13:44] 2025-11-18 19:13:10,020 | INFO     | --- collectZombieJob: --- 10, [163343]
[2025-11-18 11:13:44] 2025-11-18 19:13:10,020 | INFO     | zombie collector waiting for pid 163343
[2025-11-18 11:13:44] 2025-11-18 19:13:10,020 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-18 11:13:44] 2025-11-18 19:13:10,020 | INFO     | collected zombie processes
[2025-11-18 11:13:44] 2025-11-18 19:13:10,021 | INFO     | will attempt to kill all subprocesses of pid=163343
[2025-11-18 11:13:44] 2025-11-18 19:13:10,209 | INFO     | process IDs to be killed: [163343] (in reverse order)
[2025-11-18 11:13:44] 2025-11-18 19:13:10,264 | WARNING  | found no corresponding commands to process id(s)
[2025-11-18 11:13:44] 2025-11-18 19:13:10,264 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-18 11:13:44] 2025-11-18 19:13:10,270 | INFO     | did not find any defunct processes belonging to 163343
[2025-11-18 11:13:44] 2025-11-18 19:13:10,274 | INFO     | did not find any defunct processes belonging to 163343
[2025-11-18 11:13:44] 2025-11-18 19:13:10,275 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-18 11:13:44] 2025-11-18 19:13:10,275 | INFO     | ready for new job
[2025-11-18 11:13:44] 2025-11-18 19:13:10,275 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-18 11:13:44] 2025-11-18 19:13:10,277 | INFO     | ***************************************
[2025-11-18 11:13:44] 2025-11-18 19:13:10,277 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-18 11:13:44] 2025-11-18 19:13:10,277 | INFO     | ***************************************
[2025-11-18 11:13:44] 2025-11-18 19:13:10,277 | INFO     | 
[2025-11-18 11:13:44] 2025-11-18 19:13:10,278 | INFO     | architecture information:
[2025-11-18 11:13:44] 2025-11-18 19:13:10,279 | INFO     | executing command: cat /etc/os-release
[2025-11-18 11:13:44] 2025-11-18 19:13:10,294 | INFO     | cat /etc/os-release:
[2025-11-18 11:13:44] NAME="CentOS Linux"
[2025-11-18 11:13:44] VERSION="7 (Core)"
[2025-11-18 11:13:44] ID="centos"
[2025-11-18 11:13:44] ID_LIKE="rhel fedora"
[2025-11-18 11:13:44] VERSION_ID="7"
[2025-11-18 11:13:44] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-18 11:13:44] ANSI_COLOR="0;31"
[2025-11-18 11:13:44] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-18 11:13:44] HOME_URL="https://www.centos.org/"
[2025-11-18 11:13:44] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-18 11:13:44] 
[2025-11-18 11:13:44] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-18 11:13:44] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-18 11:13:44] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-18 11:13:44] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-18 11:13:44] 
[2025-11-18 11:13:44] 2025-11-18 19:13:10,294 | INFO     | ***************************************
[2025-11-18 11:13:44] 2025-11-18 19:13:10,806 | INFO     | executing command: df -mP /home/boinc/slots/0
[2025-11-18 11:13:44] 2025-11-18 19:13:10,819 | INFO     | sufficient remaining disk space (1317892259840 B)
[2025-11-18 11:13:44] 2025-11-18 19:13:10,819 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-18 11:13:44] 2025-11-18 19:13:10,819 | INFO     | current server update state: UPDATING_FINAL
[2025-11-18 11:13:44] 2025-11-18 19:13:10,819 | INFO     | update_server=False
[2025-11-18 11:13:44] 2025-11-18 19:13:10,820 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-18 11:13:44] 2025-11-18 19:13:10,820 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-18 11:13:44] 2025-11-18 19:13:10,820 | INFO     | aborting loop
[2025-11-18 11:13:44] 2025-11-18 19:13:10,893 | INFO     | all data control threads have been joined
[2025-11-18 11:13:44] 2025-11-18 19:13:11,805 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-18 11:13:44] 2025-11-18 19:13:11,825 | INFO     | [job] retrieve thread has finished
[2025-11-18 11:13:44] 2025-11-18 19:13:11,826 | INFO     | [job] job monitor thread has finished
[2025-11-18 11:13:44] 2025-11-18 19:13:11,881 | INFO     | [job] create_data_payload thread has finished
[2025-11-18 11:13:44] 2025-11-18 19:13:11,903 | INFO     | [data] control thread has finished
[2025-11-18 11:13:44] 2025-11-18 19:13:12,123 | INFO     | all payload control threads have been joined
[2025-11-18 11:13:44] 2025-11-18 19:13:12,224 | INFO     | all job control threads have been joined
[2025-11-18 11:13:44] 2025-11-18 19:13:12,420 | INFO     | [payload] validate_pre thread has finished
[2025-11-18 11:13:44] 2025-11-18 19:13:12,508 | INFO     | [payload] validate_post thread has finished
[2025-11-18 11:13:44] 2025-11-18 19:13:12,526 | INFO     | [payload] failed_post thread has finished
[2025-11-18 11:13:44] 2025-11-18 19:13:12,885 | INFO     | [data] copytool_in thread has finished
[2025-11-18 11:13:44] 2025-11-18 19:13:12,901 | INFO     | [job] validate thread has finished
[2025-11-18 11:13:44] 2025-11-18 19:13:12,970 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-18 11:13:44] 2025-11-18 19:13:12,970 | INFO     | [payload] execute_payloads thread has finished
[2025-11-18 11:13:44] 2025-11-18 19:13:13,115 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-18 11:13:44] 2025-11-18 19:13:13,131 | INFO     | [payload] control thread has finished
[2025-11-18 11:13:44] 2025-11-18 19:13:13,230 | INFO     | [job] control thread has finished
[2025-11-18 11:13:44] 2025-11-18 19:13:13,812 | INFO     | [data] copytool_out thread has finished
[2025-11-18 11:13:44] 2025-11-18 19:13:13,831 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-18 11:13:44] 2025-11-18 19:13:14,837 | INFO     | [job] queue monitor thread has finished
[2025-11-18 11:13:44] 2025-11-18 19:13:17,125 | INFO     | [data] queue_monitor thread has finished
[2025-11-18 11:13:44] 2025-11-18 19:13:38,538 | INFO     | [monitor] cgroup control has ended
[2025-11-18 11:13:44] 2025-11-18 19:13:39,088 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139857356683072)>', '<ExcThread(monitor, started 139856684513024)>']
[2025-11-18 11:13:44] 2025-11-18 19:13:41,515 | INFO     | PID=155843 has CPU usage=1.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-18 11:13:44] 2025-11-18 19:13:41,516 | INFO     | .. there are 19 such processes running
[2025-11-18 11:13:44] 2025-11-18 19:13:41,516 | INFO     | found 0 job(s) in 20 queues
[2025-11-18 11:13:44] 2025-11-18 19:13:41,517 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-18 11:13:44] 2025-11-18 19:13:41,517 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-18 11:13:44] 2025-11-18 19:13:41,517 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-18 11:13:44] 2025-11-18 19:13:41,517 | INFO     | [monitor] control thread has ended
[2025-11-18 11:13:44] 2025-11-18 19:13:44,121 | INFO     | all workflow threads have been joined
[2025-11-18 11:13:44] 2025-11-18 19:13:44,121 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-18 11:13:44] 2025-11-18 19:13:44,121 | INFO     | traces error code: 0
[2025-11-18 11:13:44] 2025-11-18 19:13:44,122 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-18 11:13:44] 2025-11-18 19:13:44,284 [wrapper] ==== pilot stdout END ====
[2025-11-18 11:13:44] 2025-11-18 19:13:44,300 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-18 11:13:44] 2025-11-18 19:13:44,302 [wrapper] pilotpid: 155843
[2025-11-18 11:13:44] 2025-11-18 19:13:44,304 [wrapper] Pilot exit status: 0
[2025-11-18 11:13:44] 2025-11-18 19:13:44,336 [wrapper] pandaids: 6891584951
[2025-11-18 11:13:44] 2025-11-18 19:13:44,373 [wrapper] cleanup supervisor_pilot  155849 155844
[2025-11-18 11:13:44] 2025-11-18 19:13:44,377 [wrapper] Test setup, not cleaning
[2025-11-18 11:13:44] 2025-11-18 19:13:44,379 [wrapper] apfmon messages muted
[2025-11-18 11:13:44] 2025-11-18 19:13:44,381 [wrapper] ==== wrapper stdout END ====
[2025-11-18 11:13:44] 2025-11-18 19:13:44,383 [wrapper] ==== wrapper stderr END ====
[2025-11-18 11:13:44]  *** Error codes and diagnostics ***
[2025-11-18 11:13:44]     "exeErrorCode": 65,
[2025-11-18 11:13:44]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: \"IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 cannot be opened - STOP\"",
[2025-11-18 11:13:44]     "pilotErrorCode": 1305,
[2025-11-18 11:13:44]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: \"IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 canno",
[2025-11-18 11:13:44]  *** Listing of results directory ***
[2025-11-18 11:13:44] total 401948
[2025-11-18 11:13:44] -rw-r--r--. 1 boinc boinc    576529 Nov 18 08:45 pilot3.tar.gz
[2025-11-18 11:13:44] -rwx------. 1 boinc boinc     36292 Nov 18 09:22 runpilot2-wrapper.sh
[2025-11-18 11:13:44] -rw-r--r--. 1 boinc boinc      5112 Nov 18 09:22 queuedata.json
[2025-11-18 11:13:44] -rw-r--r--. 1 boinc boinc       100 Nov 18 11:08 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-18 11:13:44] -rwxr-xr-x. 1 boinc boinc      7986 Nov 18 11:08 run_atlas
[2025-11-18 11:13:44] -rw-r--r--. 1 boinc boinc       105 Nov 18 11:08 job.xml
[2025-11-18 11:13:44] -rw-r--r--. 2 boinc boinc 407363611 Nov 18 11:08 EVNT.47493065._000471.pool.root.1
[2025-11-18 11:13:44] -rw-r--r--. 1 boinc boinc      6445 Nov 18 11:08 init_data.xml
[2025-11-18 11:13:44] -rw-r--r--. 2 boinc boinc     15120 Nov 18 11:08 start_atlas.sh
[2025-11-18 11:13:44] drwxrwx--x. 2 boinc boinc      4096 Nov 18 11:08 shared
[2025-11-18 11:13:44] -rw-r--r--. 2 boinc boinc    590092 Nov 18 11:08 input.tar.gz
[2025-11-18 11:13:44] -rw-r--r--. 1 boinc boinc         0 Nov 18 11:08 boinc_lockfile
[2025-11-18 11:13:44] -rw-r--r--. 1 boinc boinc      2773 Nov 18 11:08 pandaJob.out
[2025-11-18 11:13:44] -rw-------. 1 boinc boinc    992798 Nov 18 11:08 agis_schedconf.cvmfs.json
[2025-11-18 11:13:44] -rw-------. 1 boinc boinc   1525063 Nov 18 11:08 agis_ddmendpoints.agis.ALL.json
[2025-11-18 11:13:44] drwx------. 5 boinc boinc      4096 Nov 18 11:08 pilot3
[2025-11-18 11:13:44] -rw-r--r--. 1 boinc boinc       524 Nov 18 11:10 boinc_task_state.xml
[2025-11-18 11:13:44] -rw-------. 1 boinc boinc       991 Nov 18 11:10 memory_monitor_summary.json
[2025-11-18 11:13:44] -rw-------. 1 boinc boinc     49270 Nov 18 11:10 log.47493068._004710.job.log.tgz.1
[2025-11-18 11:13:44] -rw-------. 1 boinc boinc     10331 Nov 18 11:13 heartbeat.json
[2025-11-18 11:13:44] -rw-------. 1 boinc boinc        95 Nov 18 11:13 pilot_heartbeat.json
[2025-11-18 11:13:44] -rw-r--r--. 1 boinc boinc      8192 Nov 18 11:13 boinc_mmap_file
[2025-11-18 11:13:44] -rw-r--r--. 1 boinc boinc        23 Nov 18 11:13 wrapper_checkpoint.txt
[2025-11-18 11:13:44] -rw-------. 1 boinc boinc      4822 Nov 18 11:13 pilotlog.txt
[2025-11-18 11:13:44] -rw-------. 1 boinc boinc    100732 Nov 18 11:13 log.47493068._004710.job.log.1
[2025-11-18 11:13:44] -rw-------. 1 boinc boinc       186 Nov 18 11:13 output.list
[2025-11-18 11:13:44] -rw-r--r--. 1 boinc boinc       620 Nov 18 11:13 runtime_log
[2025-11-18 11:13:44] -rw-------. 1 boinc boinc    174080 Nov 18 11:13 result.tar.gz
[2025-11-18 11:13:44] -rw-r--r--. 1 boinc boinc      8526 Nov 18 11:13 runtime_log.err
[2025-11-18 11:13:44] -rw-------. 1 boinc boinc       645 Nov 18 11:13 p7HLDmVaef8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmf0FKDmiTspUn.diag
[2025-11-18 11:13:44] -rw-r--r--. 1 boinc boinc     22517 Nov 18 11:13 stderr.txt
[2025-11-18 11:13:44] No HITS result produced
[2025-11-18 11:13:44]  *** Contents of shared directory: ***
[2025-11-18 11:13:44] total 398592
[2025-11-18 11:13:44] -rw-r--r--. 2 boinc boinc 407363611 Nov 18 11:08 ATLAS.root_0
[2025-11-18 11:13:44] -rw-r--r--. 2 boinc boinc     15120 Nov 18 11:08 start_atlas.sh
[2025-11-18 11:13:44] -rw-r--r--. 2 boinc boinc    590092 Nov 18 11:08 input.tar.gz
[2025-11-18 11:13:44] -rw-------. 1 boinc boinc    174080 Nov 18 11:13 result.tar.gz
11:13:46 (152163): run_atlas exited; CPU time 53.384087
11:13:46 (152163): called boinc_finish(0)

</stderr_txt>
]]>

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