Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
22:30:30 (11267): wrapper (7.7.26015): starting
22:30:30 (11267): wrapper: running run_atlas (--nthreads 8)
[2025-11-20 22:30:30] Arguments: --nthreads 8
[2025-11-20 22:30:30] Threads: 8
[2025-11-20 22:30:30] Checking for CVMFS
[2025-11-20 22:30:31] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-20 22:30:31] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-20 22:30:31] Running cvmfs_config stat atlas.cern.ch
[2025-11-20 22:30:31] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-20 22:30:31] 2.11.2.0 18802 277222 142872 153088 3 313 24627603 25165825 3673 130560 2 136647540 99.891 72976752 2829 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-20 22:30:31] CVMFS is ok
[2025-11-20 22:30:31] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-20 22:30:31] Checking for apptainer binary...
[2025-11-20 22:30:31] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-20 22:30:31] Running /usr/bin/apptainer --version
[2025-11-20 22:30:31] apptainer version 1.3.2-1.el7
[2025-11-20 22:30:31] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-20 22:30:33] cg-vwn230.simple-grid.lan
[2025-11-20 22:30:33] apptainer works
[2025-11-20 22:30:33] Set ATHENA_PROC_NUMBER=8
[2025-11-20 22:30:33] Set ATHENA_CORE_NUMBER=8
[2025-11-20 22:30:33] Starting ATLAS job with PandaID=6891583849
[2025-11-20 22:30:33] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-21 23:33:53]  *** The last 200 lines of the pilot log: ***
[2025-11-21 23:33:53] 2025-11-21 22:32:50,283 | INFO     | mean x: 1763719324.75271
[2025-11-21 23:33:53] 2025-11-21 22:32:50,283 | INFO     | mean y: 2874489.090785908
[2025-11-21 23:33:53] 2025-11-21 22:32:50,283 | INFO     | intersect: -5883275974.122931
[2025-11-21 23:33:53] 2025-11-21 22:32:50,285 | INFO     | chi2: 8.070201496886908
[2025-11-21 23:33:53] 2025-11-21 22:32:50,287 | INFO     | sum of square deviations: 986995174750.8671
[2025-11-21 23:33:53] 2025-11-21 22:32:50,344 | INFO     | sum of deviations: 3833220289107.558
[2025-11-21 23:33:53] 2025-11-21 22:32:50,345 | INFO     | mean x: 1763719172.256968
[2025-11-21 23:33:53] 2025-11-21 22:32:50,345 | INFO     | mean y: 2882123.5064581917
[2025-11-21 23:33:53] 2025-11-21 22:32:50,345 | INFO     | intersect: -6846922504.049
[2025-11-21 23:33:53] 2025-11-21 22:32:50,347 | INFO     | chi2: 4.8154214277120975
[2025-11-21 23:33:53] 2025-11-21 22:32:50,347 | INFO     | current chi2=4.8154214277120975 (change=40.33084019563014 %)
[2025-11-21 23:33:53] 2025-11-21 22:32:50,349 | INFO     | sum of square deviations: 976965345970.4401
[2025-11-21 23:33:53] 2025-11-21 22:32:50,406 | INFO     | sum of deviations: 4136470676925.78
[2025-11-21 23:33:53] 2025-11-21 22:32:50,407 | INFO     | mean x: 1763719019.761255
[2025-11-21 23:33:53] 2025-11-21 22:32:50,407 | INFO     | mean y: 2886730.4222373804
[2025-11-21 23:33:53] 2025-11-21 22:32:50,407 | INFO     | intersect: -7464698519.832332
[2025-11-21 23:33:53] 2025-11-21 22:32:50,409 | INFO     | chi2: 3.3266781350175956
[2025-11-21 23:33:53] 2025-11-21 22:32:50,409 | INFO     | current chi2=3.3266781350175956 (change=30.91615791147554 %)
[2025-11-21 23:33:53] 2025-11-21 22:32:50,411 | INFO     | sum of square deviations: 967003615334.4891
[2025-11-21 23:33:53] 2025-11-21 22:32:50,452 | INFO     | monitor loop #5969: job 0:6891583849 is in state 'finished'
[2025-11-21 23:33:53] 2025-11-21 22:32:50,452 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-21 23:33:53] 2025-11-21 22:32:50,474 | INFO     | sum of deviations: 4275094499378.881
[2025-11-21 23:33:53] 2025-11-21 22:32:50,474 | INFO     | mean x: 1763718867.264887
[2025-11-21 23:33:53] 2025-11-21 22:32:50,474 | INFO     | mean y: 2888851.338809035
[2025-11-21 23:33:53] 2025-11-21 22:32:50,474 | INFO     | intersect: -7794460308.81582
[2025-11-21 23:33:53] 2025-11-21 22:32:50,476 | INFO     | chi2: 2.95728351973559
[2025-11-21 23:33:53] 2025-11-21 22:32:50,476 | INFO     | current chi2=2.95728351973559 (change=11.104008271604302 %)
[2025-11-21 23:33:53] 2025-11-21 22:32:50,477 | INFO     | right removable region: 1460
[2025-11-21 23:33:53] 2025-11-21 22:32:50,479 | INFO     | sum of square deviations: 986994046860.8673
[2025-11-21 23:33:53] 2025-11-21 22:32:50,547 | INFO     | sum of deviations: 2862626417185.6396
[2025-11-21 23:33:53] 2025-11-21 22:32:50,548 | INFO     | mean x: 1763719477.256968
[2025-11-21 23:33:53] 2025-11-21 22:32:50,548 | INFO     | mean y: 2881508.278721958
[2025-11-21 23:33:53] 2025-11-21 22:32:50,548 | INFO     | intersect: -5112519120.690182
[2025-11-21 23:33:53] 2025-11-21 22:32:50,550 | INFO     | chi2: 5.475040509436687
[2025-11-21 23:33:53] 2025-11-21 22:32:50,550 | INFO     | current chi2=5.475040509436687 (change=32.15732579231519 %)
[2025-11-21 23:33:53] 2025-11-21 22:32:50,552 | INFO     | sum of square deviations: 976963718680.0645
[2025-11-21 23:33:53] 2025-11-21 22:32:50,616 | INFO     | sum of deviations: 2758502437034.9517
[2025-11-21 23:33:53] 2025-11-21 22:32:50,616 | INFO     | mean x: 1763719629.7564802
[2025-11-21 23:33:53] 2025-11-21 22:32:50,616 | INFO     | mean y: 2883091.2687585265
[2025-11-21 23:33:53] 2025-11-21 22:32:50,617 | INFO     | intersect: -4977061203.390247
[2025-11-21 23:33:53] 2025-11-21 22:32:50,618 | INFO     | chi2: 5.4089531492845415
[2025-11-21 23:33:53] 2025-11-21 22:32:50,619 | INFO     | current chi2=5.4089531492845415 (change=1.2070661402091698 %)
[2025-11-21 23:33:53] 2025-11-21 22:32:50,619 | INFO     | left removable region: 20
[2025-11-21 23:33:53] 2025-11-21 22:32:50,621 | INFO     | sum of square deviations: 925901255524.9154
[2025-11-21 23:33:53] 2025-11-21 22:32:50,683 | INFO     | sum of deviations: 3558621067612.3535
[2025-11-21 23:33:53] 2025-11-21 22:32:50,683 | INFO     | mean x: 1763719446.770139
[2025-11-21 23:33:53] 2025-11-21 22:32:50,684 | INFO     | mean y: 2900263.263888889
[2025-11-21 23:33:53] 2025-11-21 22:32:50,684 | INFO     | intersect: -6775802263.795086
[2025-11-21 23:33:53] 2025-11-21 22:32:50,686 | INFO     | chi2: 0.21046990951248723
[2025-11-21 23:33:53] 2025-11-21 22:32:50,686 | INFO     | current memory leak: 3.84 B/s (using 1440 data points, chi2=0.21)
[2025-11-21 23:33:53] 2025-11-21 22:32:50,688 | INFO     | could have reported an average CPU frequency of 1999 MHz (50 samples)
[2025-11-21 23:33:53] 2025-11-21 22:32:50,688 | INFO     | ..............................
[2025-11-21 23:33:53] 2025-11-21 22:32:50,688 | INFO     | . Timing measurements:
[2025-11-21 23:33:53] 2025-11-21 22:32:50,689 | INFO     | . get job = 0 s
[2025-11-21 23:33:53] 2025-11-21 22:32:50,689 | INFO     | . initial setup = 6 s
[2025-11-21 23:33:53] 2025-11-21 22:32:50,689 | INFO     | . payload setup = 15 s
[2025-11-21 23:33:53] 2025-11-21 22:32:50,689 | INFO     | . stage-in = 0 s
[2025-11-21 23:33:53] 2025-11-21 22:32:50,689 | INFO     | . payload execution = 90030 s
[2025-11-21 23:33:53] 2025-11-21 22:32:50,689 | INFO     | . stage-out = 4 s
[2025-11-21 23:33:53] 2025-11-21 22:32:50,689 | INFO     | . log creation = 1 s
[2025-11-21 23:33:53] 2025-11-21 22:32:50,689 | INFO     | ..............................
[2025-11-21 23:33:53] 2025-11-21 22:32:50,826 | INFO     | 
[2025-11-21 23:33:53] 2025-11-21 22:32:50,826 | INFO     | job summary report
[2025-11-21 23:33:53] 2025-11-21 22:32:50,827 | INFO     | --------------------------------------------------
[2025-11-21 23:33:53] 2025-11-21 22:32:50,827 | INFO     | PanDA job id: 6891583849
[2025-11-21 23:33:53] 2025-11-21 22:32:50,827 | INFO     | task id: 47493068
[2025-11-21 23:33:53] 2025-11-21 22:32:50,827 | INFO     | errors: (none)
[2025-11-21 23:33:53] 2025-11-21 22:32:50,827 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-21 23:33:53] 2025-11-21 22:32:50,827 | INFO     | pilot state: finished 
[2025-11-21 23:33:53] 2025-11-21 22:32:50,827 | INFO     | transexitcode: 0
[2025-11-21 23:33:53] 2025-11-21 22:32:50,827 | INFO     | exeerrorcode: 0
[2025-11-21 23:33:53] 2025-11-21 22:32:50,827 | INFO     | exeerrordiag: 
[2025-11-21 23:33:53] 2025-11-21 22:32:50,827 | INFO     | exitcode: 0
[2025-11-21 23:33:53] 2025-11-21 22:32:50,828 | INFO     | exitmsg: OK
[2025-11-21 23:33:53] 2025-11-21 22:32:50,828 | INFO     | cpuconsumptiontime: 337828 s
[2025-11-21 23:33:53] 2025-11-21 22:32:50,828 | INFO     | nevents: 1000
[2025-11-21 23:33:53] 2025-11-21 22:32:50,828 | INFO     | neventsw: 0
[2025-11-21 23:33:53] 2025-11-21 22:32:50,828 | INFO     | pid: 28907
[2025-11-21 23:33:53] 2025-11-21 22:32:50,828 | INFO     | pgrp: 28907
[2025-11-21 23:33:53] 2025-11-21 22:32:50,828 | INFO     | corecount: 8
[2025-11-21 23:33:53] 2025-11-21 22:32:50,828 | INFO     | event service: False
[2025-11-21 23:33:53] 2025-11-21 22:32:50,828 | INFO     | sizes: {0: 2298625, 1: 2298824, 2: 2298824, 12: 2298852, 18: 2299142, 23: 2299170, 90049: 2362859, 90054: 2371853, 90058: 2371909, 90071: 2372155}
[2025-11-21 23:33:53] 2025-11-21 22:32:50,828 | INFO     | --------------------------------------------------
[2025-11-21 23:33:53] 2025-11-21 22:32:50,828 | INFO     | 
[2025-11-21 23:33:53] 2025-11-21 22:32:50,829 | INFO     | executing command: ls -lF /var/lib/boinc/slots/4
[2025-11-21 23:33:53] 2025-11-21 22:32:50,881 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-21 23:33:53] 2025-11-21 22:32:50,881 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-21 23:33:53] 2025-11-21 22:32:50,882 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-21 23:33:53] 2025-11-21 22:32:50,882 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-21 23:33:53] 2025-11-21 22:32:50,882 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-21 23:33:53] 2025-11-21 22:32:50,882 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-21 23:33:53] 2025-11-21 22:32:50,882 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-21 23:33:53] 2025-11-21 22:32:50,882 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-21 23:33:53] 2025-11-21 22:32:50,882 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-21 23:33:53] 2025-11-21 22:32:50,882 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-21 23:33:53] 2025-11-21 22:32:50,883 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-21 23:33:53] 2025-11-21 22:32:50,883 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-21 23:33:53] 2025-11-21 22:32:50,883 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-21 23:33:53] 2025-11-21 22:32:50,883 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-21 23:33:53] 2025-11-21 22:32:50,883 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-21 23:33:53] 2025-11-21 22:32:50,883 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-21 23:33:53] 2025-11-21 22:32:50,883 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-21 23:33:53] 2025-11-21 22:32:50,883 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-21 23:33:53] 2025-11-21 22:32:50,884 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-21 23:33:53] 2025-11-21 22:32:50,884 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-21 23:33:53] 2025-11-21 22:32:50,884 | INFO     | job 6891583849 has completed (purged errors)
[2025-11-21 23:33:53] 2025-11-21 22:32:50,884 | INFO     | overall cleanup function is called
[2025-11-21 23:33:53] 2025-11-21 22:32:51,903 | INFO     | --- collectZombieJob: --- 10, [28907]
[2025-11-21 23:33:53] 2025-11-21 22:32:51,904 | INFO     | zombie collector waiting for pid 28907
[2025-11-21 23:33:53] 2025-11-21 22:32:51,904 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-21 23:33:53] 2025-11-21 22:32:51,904 | INFO     | collected zombie processes
[2025-11-21 23:33:53] 2025-11-21 22:32:51,904 | INFO     | will attempt to kill all subprocesses of pid=28907
[2025-11-21 23:33:53] 2025-11-21 22:32:52,017 | INFO     | process IDs to be killed: [28907] (in reverse order)
[2025-11-21 23:33:53] 2025-11-21 22:32:52,105 | WARNING  | found no corresponding commands to process id(s)
[2025-11-21 23:33:53] 2025-11-21 22:32:52,105 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-21 23:33:53] 2025-11-21 22:32:52,109 | INFO     | did not find any defunct processes belonging to 28907
[2025-11-21 23:33:53] 2025-11-21 22:32:52,112 | INFO     | did not find any defunct processes belonging to 28907
[2025-11-21 23:33:53] 2025-11-21 22:32:52,139 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-21 23:33:53] 2025-11-21 22:32:52,139 | INFO     | ready for new job
[2025-11-21 23:33:53] 2025-11-21 22:32:52,139 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-21 23:33:53] 2025-11-21 22:32:52,146 | INFO     | ***************************************
[2025-11-21 23:33:53] 2025-11-21 22:32:52,147 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-21 23:33:53] 2025-11-21 22:32:52,147 | INFO     | ***************************************
[2025-11-21 23:33:53] 2025-11-21 22:32:52,147 | INFO     | 
[2025-11-21 23:33:53] 2025-11-21 22:32:52,148 | INFO     | pilot is running in a VM
[2025-11-21 23:33:53] 2025-11-21 22:32:52,148 | INFO     | architecture information:
[2025-11-21 23:33:53] 2025-11-21 22:32:52,153 | INFO     | executing command: cat /etc/os-release
[2025-11-21 23:33:53] 2025-11-21 22:32:52,218 | INFO     | cat /etc/os-release:
[2025-11-21 23:33:53] NAME="CentOS Linux"
[2025-11-21 23:33:53] VERSION="7 (Core)"
[2025-11-21 23:33:53] ID="centos"
[2025-11-21 23:33:53] ID_LIKE="rhel fedora"
[2025-11-21 23:33:53] VERSION_ID="7"
[2025-11-21 23:33:53] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-21 23:33:53] ANSI_COLOR="0;31"
[2025-11-21 23:33:53] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-21 23:33:53] HOME_URL="https://www.centos.org/"
[2025-11-21 23:33:53] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-21 23:33:53] 
[2025-11-21 23:33:53] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-21 23:33:53] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-21 23:33:53] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-21 23:33:53] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-21 23:33:53] 
[2025-11-21 23:33:53] 2025-11-21 22:32:52,219 | INFO     | ***************************************
[2025-11-21 23:33:53] 2025-11-21 22:32:52,722 | INFO     | executing command: df -mP /var/lib/boinc/slots/4
[2025-11-21 23:33:53] 2025-11-21 22:32:52,754 | INFO     | sufficient remaining disk space (495217278976 B)
[2025-11-21 23:33:53] 2025-11-21 22:32:52,754 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-21 23:33:53] 2025-11-21 22:32:52,754 | INFO     | current server update state: UPDATING_FINAL
[2025-11-21 23:33:53] 2025-11-21 22:32:52,755 | INFO     | update_server=False
[2025-11-21 23:33:53] 2025-11-21 22:32:52,755 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-21 23:33:53] 2025-11-21 22:32:52,755 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-21 23:33:53] 2025-11-21 22:32:52,755 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-21 23:33:53] 2025-11-21 22:32:52,920 | INFO     | all payload control threads have been joined
[2025-11-21 23:33:53] 2025-11-21 22:32:52,961 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-21 23:33:53] 2025-11-21 22:32:52,962 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-21 23:33:53] 2025-11-21 22:32:52,962 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-21 23:33:53] 2025-11-21 22:32:52,962 | INFO     | will abort loop
[2025-11-21 23:33:53] 2025-11-21 22:32:53,089 | INFO     | all data control threads have been joined
[2025-11-21 23:33:53] 2025-11-21 22:32:53,762 | INFO     | [job] queue monitor thread has finished
[2025-11-21 23:33:53] 2025-11-21 22:32:53,766 | INFO     | [job] retrieve thread has finished
[2025-11-21 23:33:53] 2025-11-21 22:32:53,926 | INFO     | [payload] control thread has finished
[2025-11-21 23:33:53] 2025-11-21 22:32:53,948 | INFO     | [payload] validate_post thread has finished
[2025-11-21 23:33:53] 2025-11-21 22:32:53,959 | INFO     | all job control threads have been joined
[2025-11-21 23:33:53] 2025-11-21 22:32:53,967 | INFO     | [job] job monitor thread has finished
[2025-11-21 23:33:53] 2025-11-21 22:32:53,979 | INFO     | [data] copytool_in thread has finished
[2025-11-21 23:33:53] 2025-11-21 22:32:53,990 | INFO     | [job] validate thread has finished
[2025-11-21 23:33:53] 2025-11-21 22:32:54,095 | INFO     | [data] control thread has finished
[2025-11-21 23:33:53] 2025-11-21 22:32:54,176 | INFO     | [payload] validate_pre thread has finished
[2025-11-21 23:33:53] 2025-11-21 22:32:54,253 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-21 23:33:53] 2025-11-21 22:32:54,668 | INFO     | [job] create_data_payload thread has finished
[2025-11-21 23:33:53] 2025-11-21 22:32:54,861 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-21 23:33:53] 2025-11-21 22:32:54,965 | INFO     | [job] control thread has finished
[2025-11-21 23:33:53] 2025-11-21 22:32:55,039 | INFO     | [payload] execute_payloads thread has finished
[2025-11-21 23:33:53] 2025-11-21 22:32:55,289 | INFO     | [payload] failed_post thread has finished
[2025-11-21 23:33:53] 2025-11-21 22:32:56,260 | INFO     | [data] copytool_out thread has finished
[2025-11-21 23:33:53] 2025-11-21 22:32:56,762 | INFO     | [data] queue_monitor thread has finished
[2025-11-21 23:33:53] 2025-11-21 22:33:22,106 | INFO     | PID=18865 has CPU usage=4.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-21 23:33:53] 2025-11-21 22:33:22,106 | INFO     | .. there are 9 such processes running
[2025-11-21 23:33:53] 2025-11-21 22:33:22,108 | INFO     | found 0 job(s) in 20 queues
[2025-11-21 23:33:53] 2025-11-21 22:33:22,108 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-21 23:33:53] 2025-11-21 22:33:22,108 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-21 23:33:53] 2025-11-21 22:33:43,309 | INFO     | [monitor] cgroup control has ended
[2025-11-21 23:33:53] 2025-11-21 22:33:45,095 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139980482512704)>', '<ExcThread(monitor, started 139979812493056)>']
[2025-11-21 23:33:53] 2025-11-21 22:33:45,243 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-21 23:33:53] 2025-11-21 22:33:45,244 | INFO     | [monitor] control thread has ended
[2025-11-21 23:33:53] 2025-11-21 22:33:50,121 | INFO     | all workflow threads have been joined
[2025-11-21 23:33:53] 2025-11-21 22:33:50,122 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-21 23:33:53] 2025-11-21 22:33:50,122 | INFO     | traces error code: 0
[2025-11-21 23:33:53] 2025-11-21 22:33:50,122 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-21 23:33:53] 2025-11-21 22:33:50,491 [wrapper] ==== pilot stdout END ====
[2025-11-21 23:33:53] 2025-11-21 22:33:50,578 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-21 23:33:53] 2025-11-21 22:33:50,596 [wrapper] pilotpid: 18865
[2025-11-21 23:33:53] 2025-11-21 22:33:50,608 [wrapper] Pilot exit status: 0
[2025-11-21 23:33:53] 2025-11-21 22:33:51,076 [wrapper] pandaids: 6891583849
[2025-11-21 23:33:53] 2025-11-21 22:33:51,694 [wrapper] cleanup supervisor_pilot 26665 18866
[2025-11-21 23:33:53] 2025-11-21 22:33:51,782 [wrapper] Test setup, not cleaning
[2025-11-21 23:33:53] 2025-11-21 22:33:51,838 [wrapper] apfmon messages muted
[2025-11-21 23:33:53] 2025-11-21 22:33:51,935 [wrapper] ==== wrapper stdout END ====
[2025-11-21 23:33:53] 2025-11-21 22:33:51,969 [wrapper] ==== wrapper stderr END ====
[2025-11-21 23:33:53]  *** Error codes and diagnostics ***
[2025-11-21 23:33:53]     "exeErrorCode": 0,
[2025-11-21 23:33:53]     "exeErrorDiag": "",
[2025-11-21 23:33:53]     "pilotErrorCode": 0,
[2025-11-21 23:33:53]     "pilotErrorDiag": "",
[2025-11-21 23:33:53]  *** Listing of results directory ***
[2025-11-21 23:33:53] total 1342400
[2025-11-21 23:33:53] -rw-r--r--. 1 boinc boinc    576529 Nov 18 17:45 pilot3.tar.gz
[2025-11-21 23:33:53] -rwx------. 1 boinc boinc     36292 Nov 18 18:15 runpilot2-wrapper.sh
[2025-11-21 23:33:53] -rw-r--r--. 1 boinc boinc      5112 Nov 18 18:15 queuedata.json
[2025-11-21 23:33:53] -rw-r--r--. 1 boinc boinc       100 Nov 20 22:30 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-21 23:33:53] -rwxr-xr-x. 1 boinc boinc      7986 Nov 20 22:30 run_atlas
[2025-11-21 23:33:53] -rw-r--r--. 1 boinc boinc       105 Nov 20 22:30 job.xml
[2025-11-21 23:33:53] -rw-r--r--. 2 boinc boinc 411664824 Nov 20 22:30 EVNT.47493065._000447.pool.root.1
[2025-11-21 23:33:53] -rw-r--r--. 1 boinc boinc      6391 Nov 20 22:30 init_data.xml
[2025-11-21 23:33:53] -rw-r--r--. 2 boinc boinc     15120 Nov 20 22:30 start_atlas.sh
[2025-11-21 23:33:53] drwxrwx--x. 2 boinc boinc        68 Nov 20 22:30 shared
[2025-11-21 23:33:53] -rw-r--r--. 2 boinc boinc    590097 Nov 20 22:30 input.tar.gz
[2025-11-21 23:33:53] -rw-r--r--. 1 boinc boinc         0 Nov 20 22:30 boinc_lockfile
[2025-11-21 23:33:53] -rw-r--r--. 1 boinc boinc      2773 Nov 20 22:30 pandaJob.out
[2025-11-21 23:33:53] -rw-------. 1 boinc boinc    989440 Nov 20 22:30 agis_schedconf.cvmfs.json
[2025-11-21 23:33:53] drwx------. 5 boinc boinc      4096 Nov 20 22:31 pilot3
[2025-11-21 23:33:53] -rw-r--r--. 1 boinc boinc       533 Nov 21 23:13 boinc_task_state.xml
[2025-11-21 23:33:53] -rw-------. 1 boinc boinc 930016228 Nov 21 23:31 HITS.47493068._004463.pool.root.1
[2025-11-21 23:33:53] -rw-------. 1 boinc boinc      1033 Nov 21 23:32 memory_monitor_summary.json
[2025-11-21 23:33:53] -rw-------. 1 boinc boinc   1526164 Nov 21 23:32 agis_ddmendpoints.agis.ALL.json
[2025-11-21 23:33:53] -rw-------. 1 boinc boinc   2538414 Nov 21 23:32 log.47493068._004463.job.log.tgz.1
[2025-11-21 23:33:53] -rw-------. 1 boinc boinc      8626 Nov 21 23:32 heartbeat.json
[2025-11-21 23:33:53] -rw-------. 1 boinc boinc        95 Nov 21 23:33 pilot_heartbeat.json
[2025-11-21 23:33:53] -rw-r--r--. 1 boinc boinc        29 Nov 21 23:33 wrapper_checkpoint.txt
[2025-11-21 23:33:53] -rw-r--r--. 1 boinc boinc      8192 Nov 21 23:33 boinc_mmap_file
[2025-11-21 23:33:53] -rw-------. 1 boinc boinc      5070 Nov 21 23:33 pilotlog.txt
[2025-11-21 23:33:53] -rw-------. 1 boinc boinc  11973667 Nov 21 23:33 log.47493068._004463.job.log.1
[2025-11-21 23:33:53] -rw-------. 1 boinc boinc       353 Nov 21 23:33 output.list
[2025-11-21 23:33:53] -rw-r--r--. 1 boinc boinc       620 Nov 21 23:33 runtime_log
[2025-11-21 23:33:53] -rw-------. 1 boinc boinc  14530560 Nov 21 23:33 result.tar.gz
[2025-11-21 23:33:53] -rw-r--r--. 1 boinc boinc      8703 Nov 21 23:33 runtime_log.err
[2025-11-21 23:33:53] -rw-------. 1 boinc boinc       662 Nov 21 23:33 JeKODm7Tef8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmOYFKDm7SCznn.diag
[2025-11-21 23:33:53] -rw-r--r--. 1 boinc boinc     20902 Nov 21 23:33 stderr.txt
[2025-11-21 23:33:54] HITS file was successfully produced:
[2025-11-21 23:33:54] -rw-------. 1 boinc boinc 930016228 Nov 21 23:31 shared/HITS.pool.root.1
[2025-11-21 23:33:54]  *** Contents of shared directory: ***
[2025-11-21 23:33:54] total 1325028
[2025-11-21 23:33:54] -rw-r--r--. 2 boinc boinc 411664824 Nov 20 22:30 ATLAS.root_0
[2025-11-21 23:33:54] -rw-r--r--. 2 boinc boinc     15120 Nov 20 22:30 start_atlas.sh
[2025-11-21 23:33:54] -rw-r--r--. 2 boinc boinc    590097 Nov 20 22:30 input.tar.gz
[2025-11-21 23:33:54] -rw-------. 1 boinc boinc 930016228 Nov 21 23:31 HITS.pool.root.1
[2025-11-21 23:33:54] -rw-------. 1 boinc boinc  14530560 Nov 21 23:33 result.tar.gz
23:33:55 (11267): run_atlas exited; CPU time 338357.540218
23:33:55 (11267): called boinc_finish(0)

</stderr_txt>
]]>

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