Stderr output

<core_client_version>8.2.4</core_client_version>
<![CDATA[
<stderr_txt>
2025-11-20 09:06:01 (16808): vboxwrapper version 26210
2025-11-20 09:06:01 (16808): BOINC client version: 8.2.4
2025-11-20 09:06:02 (16808): Detected: VirtualBox VboxManage Interface (Version: 7.2.0)
2025-11-20 09:06:02 (16808): Successfully copied 'init_data.xml' to the shared directory.
2025-11-20 09:06:02 (16808): Create VM. (boinc_427ae883680304d2, slot#2)
2025-11-20 09:06:03 (16808): Setting Memory Size for VM. (4800MB)
2025-11-20 09:06:03 (16808): Setting CPU Count for VM. (8)
2025-11-20 09:06:03 (16808): Setting Chipset Options for VM.
2025-11-20 09:06:04 (16808): Setting Graphics Controller Options for VM. (Driver: VBoxVGA, 16MB)
2025-11-20 09:06:04 (16808): Setting Boot Options for VM.
2025-11-20 09:06:04 (16808): Setting Network Configuration for NAT. (Driver: virtio)
2025-11-20 09:06:05 (16808): Enabling VM Network Access.
2025-11-20 09:06:05 (16808): Disabling USB Support for VM.
2025-11-20 09:06:05 (16808): Disabling COM Port Support for VM.
2025-11-20 09:06:05 (16808): Disabling LPT Port Support for VM.
2025-11-20 09:06:06 (16808): Disabling Audio Support for VM.
2025-11-20 09:06:06 (16808): Disabling Clipboard Support for VM.
2025-11-20 09:06:06 (16808): Disabling Drag and Drop Support for VM.
2025-11-20 09:06:06 (16808): Adding storage controller(s) to VM.
2025-11-20 09:06:07 (16808): Adding virtual disk drive to VM. (ATLAS_vbox_3.03_image.vdi)
2025-11-20 09:06:07 (16808): Adding VirtualBox Guest Additions to VM.
2025-11-20 09:06:07 (16808): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-11-20 09:06:08 (16808): forwarding host port 54952 to guest port 80
2025-11-20 09:06:08 (16808): Enabling remote desktop for VM.
2025-11-20 09:06:08 (16808): Required extension pack not installed, remote desktop not enabled.
2025-11-20 09:06:08 (16808): Enabling shared directory for VM.
2025-11-20 09:06:09 (16808): Starting VM using VBoxManage interface. (boinc_427ae883680304d2, slot#2)
2025-11-20 09:06:13 (16808): Successfully started VM. (PID = '20976')
2025-11-20 09:06:13 (16808): Reporting VM Process ID to BOINC.
2025-11-20 09:06:13 (16808): Guest Log: BIOS: VirtualBox 7.2.0
2025-11-20 09:06:13 (16808): Guest Log: CPUID EDX: 0x178bfbff
2025-11-20 09:06:13 (16808): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-11-20 09:06:13 (16808): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-11-20 09:06:13 (16808): VM state change detected. (old = 'poweredoff', new = 'running')
2025-11-20 09:06:13 (16808): Detected: Web Application Enabled (http://localhost:54952)
2025-11-20 09:06:13 (16808): Preference change detected
2025-11-20 09:06:13 (16808): Setting CPU throttle for VM. (100%)
2025-11-20 09:06:14 (16808): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-11-20 09:06:15 (16808): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-11-20 09:06:15 (16808): Guest Log: BIOS: Booting from Hard Disk...
2025-11-20 09:06:18 (16808): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-11-20 09:06:18 (16808): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-11-20 09:06:18 (16808): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-11-20 09:06:18 (16808): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-11-20 09:06:18 (16808): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-11-20 09:06:18 (16808): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-11-20 09:06:18 (16808): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-11-20 09:06:18 (16808): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-11-20 09:06:18 (16808): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-11-20 09:06:18 (16808): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-11-20 09:06:18 (16808): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-11-20 09:06:18 (16808): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-11-20 09:06:18 (16808): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-11-20 09:06:18 (16808): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-11-20 09:06:18 (16808): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-11-20 09:06:18 (16808): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-11-20 09:06:18 (16808): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-11-20 09:06:18 (16808): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-11-20 09:06:18 (16808): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-11-20 09:06:18 (16808): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-11-20 09:06:18 (16808): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-11-20 09:06:18 (16808): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-11-20 09:06:18 (16808): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-11-20 09:06:18 (16808): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-11-20 09:06:18 (16808): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-11-20 09:06:18 (16808): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-11-20 09:06:18 (16808): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-11-20 09:06:18 (16808): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-11-20 09:06:18 (16808): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-11-20 09:06:18 (16808): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-11-20 09:06:18 (16808): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-11-20 09:06:18 (16808): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-11-20 09:06:23 (16808): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-11-20 09:06:23 (16808): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-11-20 09:06:27 (16808): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-11-20 09:06:27 (16808): Guest Log: 00:00:00.000081 main     Log opened 2025-11-20T09:06:25.422331000Z
2025-11-20 09:06:27 (16808): Guest Log: 00:00:00.000162 main     OS Product: Linux
2025-11-20 09:06:27 (16808): Guest Log: 00:00:00.000189 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-11-20 09:06:27 (16808): Guest Log: 00:00:00.000210 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-11-20 09:06:27 (16808): Guest Log: 00:00:00.000231 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-11-20 09:06:27 (16808): Guest Log: 00:00:00.000231 main     Process ID: 1370
2025-11-20 09:06:27 (16808): Guest Log: 00:00:00.000231 main     Package type: LINUX_64BITS_GENERIC
2025-11-20 09:06:27 (16808): Guest Log: 00:00:00.000839 main     5.2.32 r132073 started. Verbose level = 0
2025-11-20 09:06:27 (16808): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-11-20 09:06:27 (16808): Guest Log: [INFO] Mounting shared directory
2025-11-20 09:06:27 (16808): Guest Log: [INFO] Checking for init_data.xml
2025-11-20 09:06:31 (16808): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-11-20 09:06:31 (16808): Guest Log: [INFO] Detected branch: prod
2025-11-20 09:06:31 (16808): Guest Log: This is the prod version of the ATLAS job wrapper
2025-11-20 09:06:31 (16808): Guest Log: Copying input files
2025-11-20 09:06:33 (16808): Guest Log: Copied input files into RunAtlas.
2025-11-20 09:06:33 (16808): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-11-20 09:06:33 (16808): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-11-20 09:06:33 (16808): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-11-20 09:06:33 (16808): Guest Log: Further information can be found at the LHC@home message board.
2025-11-20 09:06:37 (16808): Guest Log: 00:00:10.005806 timesync vgsvcTimeSyncWorker: Radical guest time change: 21 612 210 941 000ns (GuestNow=1 763 651 197 634 981 000 ns GuestLast=1 763 629 585 424 040 000 ns fSetTimeLastLoop=true )
2025-11-20 09:06:42 (16808): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-11-20 09:06:42 (16808): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-11-20 09:06:42 (16808): Guest Log: 2.6.3.0 1649 0 32152 153084 4 1 3117639 4096000 0 65024 0 0 n/a 0 0 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
2025-11-20 09:06:42 (16808): Guest Log: copied the webapp to /var/www
2025-11-20 09:06:42 (16808): Guest Log: ATHENA_PROC_NUMBER=8
2025-11-20 09:06:42 (16808): Guest Log: ATHENA_CORE_NUMBER=8
2025-11-20 09:06:42 (16808): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-11-20 09:06:42 (16808): Guest Log:  *** Starting ATLAS job. (PandaID=6891567792 taskID=47493068) ***
2025-11-20 09:12:54 (16808): Preference change detected
2025-11-20 09:12:54 (16808): Setting CPU throttle for VM. (100%)
2025-11-20 09:12:54 (16808): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-11-20 10:46:16 (16808): Status Report: Elapsed Time: '6000.000000'
2025-11-20 10:46:16 (16808): Status Report: CPU Time: '44365.203125'
2025-11-20 12:26:19 (16808): Status Report: Elapsed Time: '12000.000000'
2025-11-20 12:26:19 (16808): Status Report: CPU Time: '91472.687500'
2025-11-20 14:06:22 (16808): Status Report: Elapsed Time: '18000.000000'
2025-11-20 14:06:22 (16808): Status Report: CPU Time: '138583.953125'
2025-11-20 15:46:24 (16808): Status Report: Elapsed Time: '24000.000000'
2025-11-20 15:46:24 (16808): Status Report: CPU Time: '185697.078125'
2025-11-20 17:26:27 (16808): Status Report: Elapsed Time: '30000.000000'
2025-11-20 17:26:27 (16808): Status Report: CPU Time: '232797.265625'
2025-11-20 19:06:30 (16808): Status Report: Elapsed Time: '36000.000000'
2025-11-20 19:06:30 (16808): Status Report: CPU Time: '279883.671875'
2025-11-20 19:38:23 (16808): Guest Log:  *** Job finished ***
2025-11-20 19:38:23 (16808): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-11-20 19:38:23 (16808): Guest Log: 2025-11-21 01:37:33,782 | INFO     | [data] queue_monitor thread has finished
2025-11-20 19:38:23 (16808): Guest Log: 2025-11-21 01:37:59,675 | INFO     | [monitor] cgroup control has ended
2025-11-20 19:38:23 (16808): Guest Log: 2025-11-21 01:38:01,880 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140056913295168)>', '<ExcThread(monitor, started 140055595185920)>']
2025-11-20 19:38:23 (16808): Guest Log: 2025-11-21 01:38:02,277 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-11-20 19:38:23 (16808): Guest Log: 2025-11-21 01:38:02,277 | INFO     | [monitor] control thread has ended
2025-11-20 19:38:23 (16808): Guest Log: 2025-11-21 01:38:03,588 [wrapper] supervise_pilot (15 min periods counter: 43)
2025-11-20 19:38:23 (16808): Guest Log: 2025-11-21 01:38:06,885 | INFO     | all workflow threads have been joined
2025-11-20 19:38:23 (16808): Guest Log: 2025-11-21 01:38:06,886 | INFO     | end of generic workflow (traces error code: 0)
2025-11-20 19:38:23 (16808): Guest Log: 2025-11-21 01:38:06,886 | INFO     | traces error code: 0
2025-11-20 19:38:23 (16808): Guest Log: 2025-11-21 01:38:06,886 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-11-20 19:38:23 (16808): Guest Log: 2025-11-21 01:38:06,986 [wrapper] ==== pilot stdout END ====
2025-11-20 19:38:23 (16808): Guest Log: 2025-11-21 01:38:06,990 [wrapper] ==== wrapper stdout RESUME ====
2025-11-20 19:38:23 (16808): Guest Log: 2025-11-21 01:38:06,994 [wrapper] pilotpid: 6092
2025-11-20 19:38:23 (16808): Guest Log: 2025-11-21 01:38:06,998 [wrapper] Pilot exit status: 0
2025-11-20 19:38:23 (16808): Guest Log: 2025-11-21 01:38:07,014 [wrapper] pandaids: 6891567792
2025-11-20 19:38:23 (16808): Guest Log: 2025-11-21 01:38:07,046 [wrapper] cleanup supervisor_pilot 23441 6093
2025-11-20 19:38:23 (16808): Guest Log: 2025-11-21 01:38:07,052 [wrapper] Test setup, not cleaning
2025-11-20 19:38:23 (16808): Guest Log: 2025-11-21 01:38:07,056 [wrapper] apfmon messages muted
2025-11-20 19:38:23 (16808): Guest Log: 2025-11-21 01:38:07,060 [wrapper] ==== wrapper stdout END ====
2025-11-20 19:38:23 (16808): Guest Log: 2025-11-21 01:38:07,065 [wrapper] ==== wrapper stderr END ====
2025-11-20 19:38:23 (16808): Guest Log:  *** Error codes and diagnostics ***
2025-11-20 19:38:23 (16808): Guest Log:     "exeErrorCode": 0,
2025-11-20 19:38:23 (16808): Guest Log:     "exeErrorDiag": "",
2025-11-20 19:38:23 (16808): Guest Log:     "pilotErrorCode": 0,
2025-11-20 19:38:23 (16808): Guest Log:     "pilotErrorDiag": "",
2025-11-20 19:38:23 (16808): Guest Log:  *** Listing of results directory ***
2025-11-20 19:38:23 (16808): Guest Log: total 919088
2025-11-20 19:38:23 (16808): Guest Log: -rw-r--r--. 1 atlas atlas    576529 Nov 18 15:15 pilot3.tar.gz
2025-11-20 19:38:23 (16808): Guest Log: -rw-r--r--. 1 atlas atlas      5112 Nov 18 15:32 queuedata.json
2025-11-20 19:38:23 (16808): Guest Log: -rwx------. 1 atlas atlas     36292 Nov 18 15:33 runpilot2-wrapper.sh
2025-11-20 19:38:23 (16808): Guest Log: -rwxr-xr-x. 1 atlas atlas     15120 Nov 20 15:06 start_atlas.sh
2025-11-20 19:38:23 (16808): Guest Log: -rwxr-xr-x. 1 atlas atlas    590101 Nov 20 15:06 input.tar.gz
2025-11-20 19:38:23 (16808): Guest Log: -rwxr-xr-x. 1 atlas atlas      9165 Nov 20 15:06 init_data.xml
2025-11-20 19:38:23 (16808): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Nov 20 15:06 EVNT.47493065._000174.pool.root.1 -> /data/./ATLAS.root_0
2025-11-20 19:38:23 (16808): Guest Log: -rw-r--r--. 1 atlas atlas      2773 Nov 20 15:06 pandaJob.out
2025-11-20 19:38:23 (16808): Guest Log: -rw-------. 1 atlas atlas    989440 Nov 20 15:07 agis_schedconf.cvmfs.json
2025-11-20 19:38:23 (16808): Guest Log: drwx------. 5 atlas atlas      4096 Nov 20 15:07 pilot3
2025-11-20 19:38:23 (16808): Guest Log: -rw-------. 1 atlas atlas        95 Nov 21 01:36 pilot_heartbeat.json
2025-11-20 19:38:23 (16808): Guest Log: -rw-------. 1 atlas atlas 923628227 Nov 21 01:36 HITS.47493068._001738.pool.root.1
2025-11-20 19:38:23 (16808): Guest Log: -rw-------. 1 atlas atlas      1040 Nov 21 01:36 memory_monitor_summary.json
2025-11-20 19:38:23 (16808): Guest Log: -rw-------. 1 atlas atlas   1526164 Nov 21 01:36 agis_ddmendpoints.agis.ALL.json
2025-11-20 19:38:23 (16808): Guest Log: -rw-------. 1 atlas atlas   1869735 Nov 21 01:36 log.47493068._001738.job.log.tgz.1
2025-11-20 19:38:23 (16808): Guest Log: -rw-------. 1 atlas atlas      8643 Nov 21 01:37 heartbeat.json
2025-11-20 19:38:23 (16808): Guest Log: -rw-------. 1 atlas atlas      4612 Nov 21 01:38 pilotlog.txt
2025-11-20 19:38:23 (16808): Guest Log: -rw-------. 1 atlas atlas   4962613 Nov 21 01:38 log.47493068._001738.job.log.1
2025-11-20 19:38:23 (16808): Guest Log: -rw-------. 1 atlas atlas       353 Nov 21 01:38 output.list
2025-11-20 19:38:23 (16808): Guest Log: -rw-r--r--. 1 atlas atlas       620 Nov 21 01:38 runtime_log
2025-11-20 19:38:23 (16808): Guest Log: -rw-------. 1 atlas atlas   6850560 Nov 21 01:38 result.tar.gz
2025-11-20 19:38:23 (16808): Guest Log: -rw-------. 1 atlas atlas       657 Nov 21 01:38 YTkKDmXtcf8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmXJFKDmOgK9on.diag
2025-11-20 19:38:23 (16808): Guest Log: -rw-r--r--. 1 atlas atlas      8628 Nov 21 01:38 runtime_log.err
2025-11-20 19:38:23 (16808): Guest Log: Looking for outputfile HITS.47493068._001738.pool.root.1
2025-11-20 19:38:23 (16808): Guest Log: HITS file was successfully produced
2025-11-20 19:38:23 (16808): Guest Log: -rw-------. 1 atlas atlas 923628227 Nov 21 01:36 /home/atlas/RunAtlas/HITS.47493068._001738.pool.root.1
2025-11-20 19:38:26 (16808): Guest Log: Successfully finished the ATLAS job!
2025-11-20 19:38:26 (16808): Guest Log: Copying the results back to the shared directory!
2025-11-20 19:38:27 (16808): Guest Log:  *** Contents of shared directory: ***
2025-11-20 19:38:27 (16808): Guest Log: total 1308828
2025-11-20 19:38:27 (16808): Guest Log: -rwxrwxrwx. 1 root root 409129166 Nov 20 15:06 ATLAS.root_0
2025-11-20 19:38:27 (16808): Guest Log: -rwxrwxrwx. 1 root root 923628227 Nov 21  2025 HITS.pool.root.1
2025-11-20 19:38:27 (16808): Guest Log: -rwxrwxrwx. 1 root root      9165 Nov 20 15:06 init_data.xml
2025-11-20 19:38:27 (16808): Guest Log: -rwxrwxrwx. 1 root root    590101 Nov 18 18:49 input.tar.gz
2025-11-20 19:38:27 (16808): Guest Log: -rwxrwxrwx. 1 root root   6850560 Nov 21  2025 result.tar.gz
2025-11-20 19:38:27 (16808): Guest Log: -rwxrwxrwx. 1 root root     15120 Nov 18 18:49 start_atlas.sh
2025-11-20 19:38:27 (16808): Guest Log:  *** Success! Shutting down the machine. ***
2025-11-20 19:38:27 (16808): VM Completion File Detected.
2025-11-20 19:38:27 (16808): Powering off VM.
2025-11-20 19:38:27 (16808): Successfully stopped VM.
2025-11-20 19:38:27 (16808): Deregistering VM. (boinc_427ae883680304d2, slot#2)
2025-11-20 19:38:27 (16808): Removing network bandwidth throttle group from VM.
2025-11-20 19:38:27 (16808): Removing VM from VirtualBox.
2025-11-20 19:38:32 (16808): called boinc_finish(0)

</stderr_txt>
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