Stderr output

<core_client_version>8.0.4</core_client_version>
<![CDATA[
<stderr_txt>
2025-11-19 11:37:07 (6712): vboxwrapper version 26210
2025-11-19 11:37:07 (6712): BOINC client version: 8.0.4
2025-11-19 11:37:07 (6712): Detected: VirtualBox VboxManage Interface (Version: 7.0.6)
2025-11-19 11:37:07 (6712): Successfully copied 'init_data.xml' to the shared directory.
2025-11-19 11:37:08 (6712): Create VM. (boinc_b0d6124a5c9c44ca, slot#1)
2025-11-19 11:37:08 (6712): Setting Memory Size for VM. (4600MB)
2025-11-19 11:37:08 (6712): Setting CPU Count for VM. (6)
2025-11-19 11:37:09 (6712): Setting Chipset Options for VM.
2025-11-19 11:37:09 (6712): Setting Graphics Controller Options for VM. (Driver: VBoxVGA, 16MB)
2025-11-19 11:37:09 (6712): Setting Boot Options for VM.
2025-11-19 11:37:10 (6712): Setting Network Configuration for NAT. (Driver: virtio)
2025-11-19 11:37:10 (6712): Enabling VM Network Access.
2025-11-19 11:37:11 (6712): Disabling USB Support for VM.
2025-11-19 11:37:11 (6712): Disabling COM Port Support for VM.
2025-11-19 11:37:11 (6712): Disabling LPT Port Support for VM.
2025-11-19 11:37:11 (6712): Disabling Audio Support for VM.
2025-11-19 11:37:12 (6712): Disabling Clipboard Support for VM.
2025-11-19 11:37:12 (6712): Disabling Drag and Drop Support for VM.
2025-11-19 11:37:12 (6712): Adding storage controller(s) to VM.
2025-11-19 11:37:12 (6712): Adding virtual disk drive to VM. (ATLAS_vbox_3.03_image.vdi)
2025-11-19 11:37:15 (6712): Adding VirtualBox Guest Additions to VM.
2025-11-19 11:37:16 (6712): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-11-19 11:37:16 (6712): forwarding host port 57819 to guest port 80
2025-11-19 11:37:16 (6712): Enabling remote desktop for VM.
2025-11-19 11:37:16 (6712): Required extension pack not installed, remote desktop not enabled.
2025-11-19 11:37:16 (6712): Enabling shared directory for VM.
2025-11-19 11:37:17 (6712): Starting VM using VBoxManage interface. (boinc_b0d6124a5c9c44ca, slot#1)
2025-11-19 11:37:22 (6712): Successfully started VM. (PID = '7364')
2025-11-19 11:37:22 (6712): Reporting VM Process ID to BOINC.
2025-11-19 11:37:22 (6712): Guest Log: BIOS: VirtualBox 7.0.6
2025-11-19 11:37:22 (6712): Guest Log: CPUID EDX: 0x178bfbff
2025-11-19 11:37:22 (6712): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-11-19 11:37:22 (6712): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-11-19 11:37:22 (6712): VM state change detected. (old = 'poweredoff', new = 'running')
2025-11-19 11:37:22 (6712): Detected: Web Application Enabled (http://localhost:57819)
2025-11-19 11:37:22 (6712): Preference change detected
2025-11-19 11:37:22 (6712): Setting CPU throttle for VM. (80%)
2025-11-19 11:37:22 (6712): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 180 seconds) or (Vbox_job.xml: 900 seconds))
2025-11-19 11:37:24 (6712): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-11-19 11:37:24 (6712): Guest Log: BIOS: Booting from Hard Disk...
2025-11-19 11:37:27 (6712): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-11-19 11:37:27 (6712): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-11-19 11:37:27 (6712): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-11-19 11:37:27 (6712): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-11-19 11:37:27 (6712): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-11-19 11:37:27 (6712): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-11-19 11:37:27 (6712): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-11-19 11:37:27 (6712): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-11-19 11:37:27 (6712): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-11-19 11:37:27 (6712): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-11-19 11:37:27 (6712): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-11-19 11:37:27 (6712): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-11-19 11:37:27 (6712): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-11-19 11:37:27 (6712): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-11-19 11:37:27 (6712): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-11-19 11:37:27 (6712): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-11-19 11:37:27 (6712): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-11-19 11:37:27 (6712): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-11-19 11:37:27 (6712): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-11-19 11:37:27 (6712): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-11-19 11:37:27 (6712): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-11-19 11:37:27 (6712): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-11-19 11:37:27 (6712): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-11-19 11:37:27 (6712): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-11-19 11:37:27 (6712): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-11-19 11:37:27 (6712): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-11-19 11:37:27 (6712): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-11-19 11:37:27 (6712): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-11-19 11:37:27 (6712): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-11-19 11:37:27 (6712): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-11-19 11:37:27 (6712): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-11-19 11:37:27 (6712): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-11-19 11:38:32 (6712): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-11-19 11:38:32 (6712): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-11-19 11:38:35 (6712): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-11-19 11:38:35 (6712): Guest Log: 00:00:00.000101 main     Log opened 2025-11-19T11:38:33.562434000Z
2025-11-19 11:38:35 (6712): Guest Log: 00:00:00.000174 main     OS Product: Linux
2025-11-19 11:38:35 (6712): Guest Log: 00:00:00.000199 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-11-19 11:38:35 (6712): Guest Log: 00:00:00.000218 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-11-19 11:38:35 (6712): Guest Log: 00:00:00.000235 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-11-19 11:38:35 (6712): Guest Log: 00:00:00.000236 main     Process ID: 1339
2025-11-19 11:38:35 (6712): Guest Log: 00:00:00.000236 main     Package type: LINUX_64BITS_GENERIC
2025-11-19 11:38:35 (6712): Guest Log: 00:00:00.000707 main     5.2.32 r132073 started. Verbose level = 0
2025-11-19 11:38:35 (6712): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-11-19 11:38:35 (6712): Guest Log: [INFO] Mounting shared directory
2025-11-19 11:38:35 (6712): Guest Log: [INFO] Checking for init_data.xml
2025-11-19 11:38:45 (6712): Guest Log: 00:00:10.002529 timesync vgsvcTimeSyncWorker: Radical guest time change: 18 008 368 936 000ns (GuestNow=1 763 570 321 932 736 000 ns GuestLast=1 763 552 313 563 800 000 ns fSetTimeLastLoop=true )
2025-11-19 11:39:00 (6712): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-11-19 11:39:00 (6712): Guest Log: [INFO] Detected branch: prod
2025-11-19 11:39:01 (6712): Guest Log: This is the prod version of the ATLAS job wrapper
2025-11-19 11:39:01 (6712): Guest Log: Copying input files
2025-11-19 11:39:02 (6712): Guest Log: Copied input files into RunAtlas.
2025-11-19 11:39:02 (6712): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-11-19 11:39:02 (6712): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-11-19 11:39:02 (6712): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-11-19 11:39:02 (6712): Guest Log: Further information can be found at the LHC@home message board.
2025-11-19 11:39:12 (6712): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-11-19 11:39:12 (6712): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-11-19 11:39:12 (6712): Guest Log: 2.6.3.0 1620 0 32200 153051 4 1 3117639 4096000 0 65024 0 0 n/a 0 0 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
2025-11-19 11:39:13 (6712): Guest Log: copied the webapp to /var/www
2025-11-19 11:39:13 (6712): Guest Log: ATHENA_PROC_NUMBER=6
2025-11-19 11:39:13 (6712): Guest Log: ATHENA_CORE_NUMBER=6
2025-11-19 11:39:13 (6712): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-11-19 11:39:13 (6712): Guest Log:  *** Starting ATLAS job. (PandaID=6891583760 taskID=47493068) ***
2025-11-19 13:17:25 (6712): Status Report: Elapsed Time: '6000.000000'
2025-11-19 13:17:25 (6712): Status Report: CPU Time: '30236.171875'
2025-11-19 14:36:10 (6712): VM state change detected. (old = 'running', new = 'paused')
2025-11-20 16:14:53 (6712): VM state change detected. (old = 'paused', new = 'running')
2025-11-20 16:14:59 (6712): Guest Log: 02:57:35.779608 timesync vgsvcTimeSyncWorker: Radical host time change: 92 331 934 000 000ns (HostNow=1 763 673 250 772 000 000 ns HostLast=1 763 580 918 838 000 000 ns)
2025-11-20 16:15:08 (6712): Guest Log: 02:57:45.780355 timesync vgsvcTimeSyncWorker: Radical guest time change: 92 293 063 235 000ns (GuestNow=1 763 673 260 772 891 000 ns GuestLast=1 763 580 967 709 656 000 ns fSetTimeLastLoop=true )
2025-11-20 16:19:14 (6712): VM state change detected. (old = 'running', new = 'paused')
2025-11-20 16:34:17 (6712): VM state change detected. (old = 'paused', new = 'running')
2025-11-20 16:44:08 (6712): VM state change detected. (old = 'running', new = 'paused')
2025-11-20 17:13:52 (6712): VM state change detected. (old = 'paused', new = 'running')
2025-11-20 17:14:05 (6712): Guest Log: 03:11:56.112533 timesync vgsvcTimeSyncWorker: Radical guest time change: 2 709 214 704 000ns (GuestNow=1 763 676 810 312 883 000 ns GuestLast=1 763 674 101 098 179 000 ns fSetTimeLastLoop=true )
2025-11-20 17:21:11 (6712): Status Report: Elapsed Time: '12000.000000'
2025-11-20 17:21:11 (6712): Status Report: CPU Time: '62663.640625'
2025-11-20 19:02:01 (6712): Status Report: Elapsed Time: '18000.000000'
2025-11-20 19:02:01 (6712): Status Report: CPU Time: '95230.843750'
2025-11-20 20:42:52 (6712): Status Report: Elapsed Time: '24000.000000'
2025-11-20 20:42:52 (6712): Status Report: CPU Time: '127812.468750'
2025-11-20 20:49:17 (6712): VM state change detected. (old = 'running', new = 'paused')
2025-11-20 21:07:25 (6712): VM state change detected. (old = 'paused', new = 'running')
2025-11-20 22:24:15 (6712): Guest Log:  *** Job finished ***
2025-11-20 22:24:15 (6712): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-11-20 22:24:15 (6712): Guest Log: 2025-11-21 03:04:59,357 | INFO     | [data] copytool_out thread has finished
2025-11-20 22:24:15 (6712): Guest Log: 2025-11-21 03:05:00,829 | INFO     | [data] queue_monitor thread has finished
2025-11-20 22:24:15 (6712): Guest Log: 2025-11-21 03:05:28,128 | INFO     | [monitor] cgroup control has ended
2025-11-20 22:24:15 (6712): Guest Log: 2025-11-21 03:05:30,033 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139796118239040)>', '<ExcThread(monitor, started 139795388942080)>']
2025-11-20 22:24:15 (6712): Guest Log: 2025-11-21 03:05:30,077 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-11-20 22:24:15 (6712): Guest Log: 2025-11-21 03:05:30,077 | INFO     | [monitor] control thread has ended
2025-11-20 22:24:15 (6712): Guest Log: 2025-11-21 03:05:35,038 | INFO     | all workflow threads have been joined
2025-11-20 22:24:15 (6712): Guest Log: 2025-11-21 03:05:35,038 | INFO     | end of generic workflow (traces error code: 0)
2025-11-20 22:24:15 (6712): Guest Log: 2025-11-21 03:05:35,038 | INFO     | traces error code: 0
2025-11-20 22:24:15 (6712): Guest Log: 2025-11-21 03:05:35,039 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-11-20 22:24:15 (6712): Guest Log: 2025-11-21 03:05:35,116 [wrapper] ==== pilot stdout END ====
2025-11-20 22:24:15 (6712): Guest Log: 2025-11-21 03:05:35,118 [wrapper] ==== wrapper stdout RESUME ====
2025-11-20 22:24:15 (6712): Guest Log: 2025-11-21 03:05:35,121 [wrapper] pilotpid: 6035
2025-11-20 22:24:15 (6712): Guest Log: 2025-11-21 03:05:35,124 [wrapper] Pilot exit status: 0
2025-11-20 22:24:15 (6712): Guest Log: 2025-11-21 03:05:35,134 [wrapper] pandaids: 6891583760
2025-11-20 22:24:15 (6712): Guest Log: 2025-11-21 03:05:35,158 [wrapper] cleanup supervisor_pilot 10188 6036
2025-11-20 22:24:15 (6712): Guest Log: 2025-11-21 03:05:35,161 [wrapper] Test setup, not cleaning
2025-11-20 22:24:15 (6712): Guest Log: 2025-11-21 03:05:35,164 [wrapper] apfmon messages muted
2025-11-20 22:24:15 (6712): Guest Log: 2025-11-21 03:05:35,166 [wrapper] ==== wrapper stdout END ====
2025-11-20 22:24:15 (6712): Guest Log: 2025-11-21 03:05:35,169 [wrapper] ==== wrapper stderr END ====
2025-11-20 22:24:15 (6712): Guest Log:  *** Error codes and diagnostics ***
2025-11-20 22:24:15 (6712): Guest Log:     "exeErrorCode": 0,
2025-11-20 22:24:15 (6712): Guest Log:     "exeErrorDiag": "",
2025-11-20 22:24:15 (6712): Guest Log:     "pilotErrorCode": 0,
2025-11-20 22:24:15 (6712): Guest Log:     "pilotErrorDiag": "",
2025-11-20 22:24:15 (6712): Guest Log:  *** Listing of results directory ***
2025-11-20 22:24:15 (6712): Guest Log: total 900068
2025-11-20 22:24:15 (6712): Guest Log: -rw-r--r--. 1 atlas atlas    576529 Nov 18 16:45 pilot3.tar.gz
2025-11-20 22:24:15 (6712): Guest Log: -rwx------. 1 atlas atlas     36292 Nov 18 17:09 runpilot2-wrapper.sh
2025-11-20 22:24:15 (6712): Guest Log: -rw-r--r--. 1 atlas atlas      5112 Nov 18 17:09 queuedata.json
2025-11-20 22:24:15 (6712): Guest Log: -rwxr-xr-x. 1 atlas atlas     15120 Nov 19 16:38 start_atlas.sh
2025-11-20 22:24:15 (6712): Guest Log: -rwxr-xr-x. 1 atlas atlas    590093 Nov 19 16:38 input.tar.gz
2025-11-20 22:24:15 (6712): Guest Log: -rwxr-xr-x. 1 atlas atlas      8891 Nov 19 16:38 init_data.xml
2025-11-20 22:24:15 (6712): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Nov 19 16:38 EVNT.47493065._000442.pool.root.1 -> /data/./ATLAS.root_0
2025-11-20 22:24:15 (6712): Guest Log: -rw-r--r--. 1 atlas atlas      2773 Nov 19 16:39 pandaJob.out
2025-11-20 22:24:15 (6712): Guest Log: -rw-------. 1 atlas atlas    989426 Nov 19 16:39 agis_schedconf.cvmfs.json
2025-11-20 22:24:15 (6712): Guest Log: drwx------. 5 atlas atlas      4096 Nov 19 16:39 pilot3
2025-11-20 22:24:15 (6712): Guest Log: -rw-------. 1 atlas atlas        98 Nov 21 03:04 pilot_heartbeat.json
2025-11-20 22:24:15 (6712): Guest Log: -rw-------. 1 atlas atlas 907167501 Nov 21 03:04 HITS.47493068._004419.pool.root.1
2025-11-20 22:24:15 (6712): Guest Log: -rw-------. 1 atlas atlas      1034 Nov 21 03:04 memory_monitor_summary.json
2025-11-20 22:24:15 (6712): Guest Log: -rw-------. 1 atlas atlas   1526164 Nov 21 03:04 agis_ddmendpoints.agis.ALL.json
2025-11-20 22:24:15 (6712): Guest Log: -rw-------. 1 atlas atlas   1524179 Nov 21 03:04 log.47493068._004419.job.log.tgz.1
2025-11-20 22:24:15 (6712): Guest Log: -rw-------. 1 atlas atlas      8626 Nov 21 03:04 heartbeat.json
2025-11-20 22:24:15 (6712): Guest Log: -rw-------. 1 atlas atlas      4612 Nov 21 03:05 pilotlog.txt
2025-11-20 22:24:15 (6712): Guest Log: -rw-------. 1 atlas atlas   3797342 Nov 21 03:05 log.47493068._004419.job.log.1
2025-11-20 22:24:15 (6712): Guest Log: -rw-------. 1 atlas atlas       353 Nov 21 03:05 output.list
2025-11-20 22:24:15 (6712): Guest Log: -rw-r--r--. 1 atlas atlas       620 Nov 21 03:05 runtime_log
2025-11-20 22:24:15 (6712): Guest Log: -rw-------. 1 atlas atlas   5345280 Nov 21 03:05 result.tar.gz
2025-11-20 22:24:15 (6712): Guest Log: -rw-------. 1 atlas atlas       667 Nov 21 03:05 z0VMDm6Nef8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmpyFKDm5E6Mrn.diag
2025-11-20 22:24:15 (6712): Guest Log: -rw-r--r--. 1 atlas atlas      8653 Nov 21 03:05 runtime_log.err
2025-11-20 22:24:15 (6712): Guest Log: Looking for outputfile HITS.47493068._004419.pool.root.1
2025-11-20 22:24:15 (6712): Guest Log: HITS file was successfully produced
2025-11-20 22:24:15 (6712): Guest Log: -rw-------. 1 atlas atlas 907167501 Nov 21 03:04 /home/atlas/RunAtlas/HITS.47493068._004419.pool.root.1
2025-11-20 22:24:17 (6712): Guest Log: Successfully finished the ATLAS job!
2025-11-20 22:24:17 (6712): Guest Log: Copying the results back to the shared directory!
2025-11-20 22:24:17 (6712): Guest Log:  *** Contents of shared directory: ***
2025-11-20 22:24:17 (6712): Guest Log: total 1293188
2025-11-20 22:24:17 (6712): Guest Log: -rwxrwxrwx. 1 root root 411085759 Nov 19 16:37 ATLAS.root_0
2025-11-20 22:24:17 (6712): Guest Log: -rwxrwxrwx. 1 root root 907167501 Nov 21  2025 HITS.pool.root.1
2025-11-20 22:24:17 (6712): Guest Log: -rwxrwxrwx. 1 root root      8891 Nov 19 16:37 init_data.xml
2025-11-20 22:24:17 (6712): Guest Log: -rwxrwxrwx. 1 root root    590093 Nov 18 18:50 input.tar.gz
2025-11-20 22:24:17 (6712): Guest Log: -rwxrwxrwx. 1 root root   5345280 Nov 21  2025 result.tar.gz
2025-11-20 22:24:17 (6712): Guest Log: -rwxrwxrwx. 1 root root     15120 Nov 18 18:50 start_atlas.sh
2025-11-20 22:24:17 (6712): Guest Log:  *** Success! Shutting down the machine. ***
2025-11-20 22:24:17 (6712): VM Completion File Detected.
2025-11-20 22:24:17 (6712): Powering off VM.
2025-11-20 22:24:18 (6712): Successfully stopped VM.
2025-11-20 22:24:18 (6712): Deregistering VM. (boinc_b0d6124a5c9c44ca, slot#1)
2025-11-20 22:24:18 (6712): Removing network bandwidth throttle group from VM.
2025-11-20 22:24:19 (6712): Removing VM from VirtualBox.
2025-11-20 22:24:24 (6712): called boinc_finish(0)

</stderr_txt>
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