Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
10:37:49 (3856829): wrapper (7.7.26015): starting
10:37:49 (3856829): wrapper: running run_atlas (--nthreads 12)
[2025-11-18 10:37:49] Arguments: --nthreads 12
[2025-11-18 10:37:49] Threads: 12
[2025-11-18 10:37:49] Checking for CVMFS
[2025-11-18 10:37:49] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-18 10:37:49] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-18 10:37:49] Running cvmfs_config stat atlas.cern.ch
[2025-11-18 10:37:49] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-18 10:37:49] 2.11.3.0 2224448 17213 269808 153010 0 278 45339424 45568000 14073 130560 0 180027422 99.826 94754496 24662 http://cvmfs-s1bnl.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.162:3129 1
[2025-11-18 10:37:49] CVMFS is ok
[2025-11-18 10:37:49] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-18 10:37:49] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-18 10:37:49] Further information can be found at the LHC@home message board.
[2025-11-18 10:37:49] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-18 10:37:49] Checking for apptainer binary...
[2025-11-18 10:37:49] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-18 10:37:49] Running /usr/bin/apptainer --version
[2025-11-18 10:37:49] apptainer version 1.4.1-1.el9
[2025-11-18 10:37:49] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-18 10:37:49] wns0170.triumf.lcg
[2025-11-18 10:37:49] apptainer works
[2025-11-18 10:37:49] Set ATHENA_PROC_NUMBER=12
[2025-11-18 10:37:49] Set ATHENA_CORE_NUMBER=12
[2025-11-18 10:37:49] Starting ATLAS job with PandaID=6891583645
[2025-11-18 10:37:49] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-18 10:43:44]  *** The last 200 lines of the pilot log: ***
[2025-11-18 10:43:44] 2025-11-18 18:43:11,197 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-18 10:43:44] 2025-11-18 18:43:11,197 | WARNING  | wrong length of table data, x=[1763491169.0, 1763491230.0], y=[1978.0, 373276.0] (must be same and length>=4)
[2025-11-18 10:43:44] 2025-11-18 18:43:11,198 | INFO     | could have reported an average CPU frequency of 2936 MHz (4 samples)
[2025-11-18 10:43:44] 2025-11-18 18:43:11,198 | INFO     | ..............................
[2025-11-18 10:43:44] 2025-11-18 18:43:11,198 | INFO     | . Timing measurements:
[2025-11-18 10:43:44] 2025-11-18 18:43:11,198 | INFO     | . get job = 0 s
[2025-11-18 10:43:44] 2025-11-18 18:43:11,198 | INFO     | . initial setup = 4 s
[2025-11-18 10:43:44] 2025-11-18 18:43:11,198 | INFO     | . payload setup = 8 s
[2025-11-18 10:43:44] 2025-11-18 18:43:11,198 | INFO     | . stage-in = 0 s
[2025-11-18 10:43:44] 2025-11-18 18:43:11,198 | INFO     | . payload execution = 102 s
[2025-11-18 10:43:44] 2025-11-18 18:43:11,198 | INFO     | . stage-out = 0 s
[2025-11-18 10:43:44] 2025-11-18 18:43:11,198 | INFO     | . log creation = 0 s
[2025-11-18 10:43:44] 2025-11-18 18:43:11,198 | INFO     | ..............................
[2025-11-18 10:43:44] 2025-11-18 18:43:11,198 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-18 10:43:44] 2025-11-18 18:43:11,199 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6891583645/pilotlog.txt
[2025-11-18 10:43:44] 2025-11-18 18:43:11,319 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2025-11-18 10:43:44] - Log from pilotlog.txt -
[2025-11-18 10:43:44] 2025-11-18 18:43:11,196 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6891583645/memory_monitor_summary.json (trf name=prmon)
[2025-11-18 10:43:44] 2025-11-18 18:43:11,197 | INFO     | extracted standard info from prmon json
[2025-11-18 10:43:44] 2025-11-18 18:43:11,197 | INFO     | extracted standard memory fields from prmon json
[2025-11-18 10:43:44] 2025-11-18 18:43:11,197 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-18 10:43:44] 2025-11-18 18:43:11,197 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-18 10:43:44] 2025-11-18 18:43:11,197 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-18 10:43:44] 2025-11-18 18:43:11,197 | WARNING  | wrong length of table data, x=[1763491169.0, 1763491230.0], y=[1978.0, 373276.0] (must be same and length>=4)
[2025-11-18 10:43:44] 2025-11-18 18:43:11,198 | INFO     | could have reported an average CPU frequency of 2936 MHz (4 samples)
[2025-11-18 10:43:44] 2025-11-18 18:43:11,198 | INFO     | ..............................
[2025-11-18 10:43:44] 2025-11-18 18:43:11,198 | INFO     | . Timing measurements:
[2025-11-18 10:43:44] 2025-11-18 18:43:11,198 | INFO     | . get job = 0 s
[2025-11-18 10:43:44] 2025-11-18 18:43:11,198 | INFO     | . initial setup = 4 s
[2025-11-18 10:43:44] 2025-11-18 18:43:11,198 | INFO     | . payload setup = 8 s
[2025-11-18 10:43:44] 2025-11-18 18:43:11,198 | INFO     | . stage-in = 0 s
[2025-11-18 10:43:44] 2025-11-18 18:43:11,198 | INFO     | . payload execution = 102 s
[2025-11-18 10:43:44] 2025-11-18 18:43:11,198 | INFO     | . stage-out = 0 s
[2025-11-18 10:43:44] 2025-11-18 18:43:11,198 | INFO     | . log creation = 0 s
[2025-11-18 10:43:44] 2025-11-18 18:43:11,198 | INFO     | ..............................
[2025-11-18 10:43:44] 2025-11-18 18:43:11,198 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-18 10:43:44] 2025-11-18 18:43:11,199 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6891583645/pilotlog.txt
[2025-11-18 10:43:44] 2025-11-18 18:43:11,319 | WARNING  | 
[2025-11-18 10:43:44] [begin log extracts]
[2025-11-18 10:43:44] - Log from pilotlog.txt -
[2025-11-18 10:43:44] 2025-11-18 18:43:11,196 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6891583645/memory_monitor_summary.json (trf name=prmon)
[2025-11-18 10:43:44] 2025-11-18 18:43:11,197 | INFO     | extracted standard info from prmon json
[2025-11-18 10:43:44] 2025-11-18 18:43:11,197 | INFO     | extracted standard memory fields from prmon json
[2025-11-18 10:43:44] 2025-11-18 18:43:11,197 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-18 10:43:44] 2025-11-18 18:43:11,197 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-18 10:43:44] 2025-11-18 18:43:11,197 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-18 10:43:44] 2025-11-18 18:43:11,197 | WARNING  | wrong length of table data, x=[1763491169.0, 1763491230.0], y=[1978.0, 373276.0] (must be same and length>=4)
[2025-11-18 10:43:44] 2025-11-18 18:43:11,198 | INFO     | could have reported an average CPU frequency of 2936 MHz (4 samples)
[2025-11-18 10:43:44] 2025-11-18 18:43:11,198 | INFO     | ..............................
[2025-11-18 10:43:44] 2025-11-18 18:43:11,198 | INFO     | . Timing measurements:
[2025-11-18 10:43:44] 2025-11-18 18:43:11,198 | INFO     | . get job = 0 s
[2025-11-18 10:43:44] 2025-11-18 18:43:11,198 | INFO     | . initial setup = 4 s
[2025-11-18 10:43:44] 2025-11-18 18:43:11,198 | INFO     | . payload setup = 8 s
[2025-11-18 10:43:44] 2025-11-18 18:43:11,198 | INFO     | . stage-in = 0 s
[2025-11-18 10:43:44] 2025-11-18 18:43:11,198 | INFO     | . payload execution = 102 s
[2025-11-18 10:43:44] 2025-11-18 18:43:11,198 | INFO     | . stage-out = 0 s
[2025-11-18 10:43:44] 2025-11-18 18:43:11,198 | INFO     | . log creation = 0 s
[2025-11-18 10:43:44] 2025-11-18 18:43:11,198 | INFO     | ..............................
[2025-11-18 10:43:44] 2025-11-18 18:43:11,198 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-18 10:43:44] 2025-11-18 18:43:11,199 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6891583645/pilotlog.txt
[2025-11-18 10:43:44] [end log extracts]
[2025-11-18 10:43:44] 2025-11-18 18:43:11,319 | WARNING  | pilotErrorCodes = [1305, 1165] (will report primary/first error code)
[2025-11-18 10:43:44] 2025-11-18 18:43:11,319 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return c
[2025-11-18 10:43:44] 2025-11-18 18:43:11,449 | INFO     | 
[2025-11-18 10:43:44] 2025-11-18 18:43:11,449 | INFO     | job summary report
[2025-11-18 10:43:44] 2025-11-18 18:43:11,449 | INFO     | --------------------------------------------------
[2025-11-18 10:43:44] 2025-11-18 18:43:11,449 | INFO     | PanDA job id: 6891583645
[2025-11-18 10:43:44] 2025-11-18 18:43:11,449 | INFO     | task id: 47493068
[2025-11-18 10:43:44] 2025-11-18 18:43:11,450 | INFO     | error 1/2: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2025-11-18 10:40:45,239 CRITICAL Transform executor raised TransformValidationExceptio
[2025-11-18 10:43:44] 2025-11-18 18:43:11,450 | INFO     | error 2/2: 1165: Local output file is missing
[2025-11-18 10:43:44] 2025-11-18 18:43:11,450 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-18 10:43:44] 2025-11-18 18:43:11,450 | INFO     | pilot state: failed 
[2025-11-18 10:43:44] 2025-11-18 18:43:11,450 | INFO     | transexitcode: 65
[2025-11-18 10:43:44] 2025-11-18 18:43:11,450 | INFO     | exeerrorcode: 65
[2025-11-18 10:43:44] 2025-11-18 18:43:11,450 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: "IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFL
[2025-11-18 10:43:44] 2025-11-18 18:43:11,450 | INFO     | exitcode: 65
[2025-11-18 10:43:44] 2025-11-18 18:43:11,450 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: "IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 
[2025-11-18 10:43:44] 2025-11-18 18:43:11,450 | INFO     | cpuconsumptiontime: 34 s
[2025-11-18 10:43:44] 2025-11-18 18:43:11,450 | INFO     | nevents: 0
[2025-11-18 10:43:44] 2025-11-18 18:43:11,450 | INFO     | neventsw: 0
[2025-11-18 10:43:44] 2025-11-18 18:43:11,450 | INFO     | pid: 3867212
[2025-11-18 10:43:44] 2025-11-18 18:43:11,450 | INFO     | pgrp: 3867212
[2025-11-18 10:43:44] 2025-11-18 18:43:11,450 | INFO     | corecount: 12
[2025-11-18 10:43:44] 2025-11-18 18:43:11,450 | INFO     | event service: False
[2025-11-18 10:43:44] 2025-11-18 18:43:11,450 | INFO     | sizes: {0: 2296970, 1: 2297054, 2: 2297253, 13: 2297543, 23: 2297571, 114: 2323053, 115: 2327475, 117: 2327475, 252: 2327641}
[2025-11-18 10:43:44] 2025-11-18 18:43:11,450 | INFO     | --------------------------------------------------
[2025-11-18 10:43:44] 2025-11-18 18:43:11,450 | INFO     | 
[2025-11-18 10:43:44] 2025-11-18 18:43:11,450 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2025-11-18 10:43:44] 2025-11-18 18:43:11,492 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-18 10:43:44] 2025-11-18 18:43:11,492 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-18 10:43:44] 2025-11-18 18:43:11,492 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-18 10:43:44] 2025-11-18 18:43:11,492 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-18 10:43:44] 2025-11-18 18:43:11,493 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-18 10:43:44] 2025-11-18 18:43:11,493 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-18 10:43:44] 2025-11-18 18:43:11,493 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-18 10:43:44] 2025-11-18 18:43:11,493 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-18 10:43:44] 2025-11-18 18:43:11,493 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-18 10:43:44] 2025-11-18 18:43:11,493 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-18 10:43:44] 2025-11-18 18:43:11,493 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-18 10:43:44] 2025-11-18 18:43:11,493 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-18 10:43:44] 2025-11-18 18:43:11,493 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-18 10:43:44] 2025-11-18 18:43:11,493 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-18 10:43:44] 2025-11-18 18:43:11,493 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-18 10:43:44] 2025-11-18 18:43:11,493 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-18 10:43:44] 2025-11-18 18:43:11,493 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-18 10:43:44] 2025-11-18 18:43:11,493 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-18 10:43:44] 2025-11-18 18:43:11,493 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-18 10:43:44] 2025-11-18 18:43:11,493 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-18 10:43:44] 2025-11-18 18:43:11,493 | INFO     | job 6891583645 has completed (purged errors)
[2025-11-18 10:43:44] 2025-11-18 18:43:11,493 | INFO     | overall cleanup function is called
[2025-11-18 10:43:44] 2025-11-18 18:43:12,501 | INFO     | --- collectZombieJob: --- 10, [3867212]
[2025-11-18 10:43:44] 2025-11-18 18:43:12,501 | INFO     | zombie collector waiting for pid 3867212
[2025-11-18 10:43:44] 2025-11-18 18:43:12,501 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-18 10:43:44] 2025-11-18 18:43:12,501 | INFO     | collected zombie processes
[2025-11-18 10:43:44] 2025-11-18 18:43:12,501 | INFO     | will attempt to kill all subprocesses of pid=3867212
[2025-11-18 10:43:44] 2025-11-18 18:43:12,856 | INFO     | process IDs to be killed: [3867212] (in reverse order)
[2025-11-18 10:43:44] 2025-11-18 18:43:12,916 | WARNING  | found no corresponding commands to process id(s)
[2025-11-18 10:43:44] 2025-11-18 18:43:12,916 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-18 10:43:44] 2025-11-18 18:43:12,935 | INFO     | did not find any defunct processes belonging to 3867212
[2025-11-18 10:43:44] 2025-11-18 18:43:13,007 | INFO     | did not find any defunct processes belonging to 3867212
[2025-11-18 10:43:44] 2025-11-18 18:43:13,046 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-18 10:43:44] 2025-11-18 18:43:13,046 | INFO     | ready for new job
[2025-11-18 10:43:44] 2025-11-18 18:43:13,046 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-18 10:43:44] 2025-11-18 18:43:13,047 | INFO     | ***************************************
[2025-11-18 10:43:44] 2025-11-18 18:43:13,048 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-18 10:43:44] 2025-11-18 18:43:13,048 | INFO     | ***************************************
[2025-11-18 10:43:44] 2025-11-18 18:43:13,048 | INFO     | 
[2025-11-18 10:43:44] 2025-11-18 18:43:13,049 | INFO     | architecture information:
[2025-11-18 10:43:44] 2025-11-18 18:43:13,086 | INFO     | executing command: cat /etc/os-release
[2025-11-18 10:43:44] 2025-11-18 18:43:13,176 | INFO     | cat /etc/os-release:
[2025-11-18 10:43:44] NAME="CentOS Linux"
[2025-11-18 10:43:44] VERSION="7 (Core)"
[2025-11-18 10:43:44] ID="centos"
[2025-11-18 10:43:44] ID_LIKE="rhel fedora"
[2025-11-18 10:43:44] VERSION_ID="7"
[2025-11-18 10:43:44] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-18 10:43:44] ANSI_COLOR="0;31"
[2025-11-18 10:43:44] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-18 10:43:44] HOME_URL="https://www.centos.org/"
[2025-11-18 10:43:44] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-18 10:43:44] 
[2025-11-18 10:43:44] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-18 10:43:44] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-18 10:43:44] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-18 10:43:44] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-18 10:43:44] 
[2025-11-18 10:43:44] 2025-11-18 18:43:13,177 | INFO     | ***************************************
[2025-11-18 10:43:44] 2025-11-18 18:43:13,680 | INFO     | executing command: df -mP /home/boinc/slots/0
[2025-11-18 10:43:44] 2025-11-18 18:43:13,805 | INFO     | sufficient remaining disk space (2403146399744 B)
[2025-11-18 10:43:44] 2025-11-18 18:43:13,805 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-18 10:43:44] 2025-11-18 18:43:13,805 | INFO     | current server update state: UPDATING_FINAL
[2025-11-18 10:43:44] 2025-11-18 18:43:13,805 | INFO     | update_server=False
[2025-11-18 10:43:44] 2025-11-18 18:43:13,805 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-18 10:43:44] 2025-11-18 18:43:13,806 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-18 10:43:44] 2025-11-18 18:43:13,806 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-18 10:43:44] 2025-11-18 18:43:13,806 | INFO     | aborting loop
[2025-11-18 10:43:44] 2025-11-18 18:43:14,104 | INFO     | all payload control threads have been joined
[2025-11-18 10:43:44] 2025-11-18 18:43:14,641 | INFO     | all data control threads have been joined
[2025-11-18 10:43:44] 2025-11-18 18:43:14,811 | INFO     | [job] retrieve thread has finished
[2025-11-18 10:43:44] 2025-11-18 18:43:14,812 | INFO     | [job] job monitor thread has finished
[2025-11-18 10:43:44] 2025-11-18 18:43:14,822 | INFO     | [payload] execute_payloads thread has finished
[2025-11-18 10:43:44] 2025-11-18 18:43:14,832 | INFO     | [payload] validate_post thread has finished
[2025-11-18 10:43:44] 2025-11-18 18:43:15,092 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-18 10:43:44] 2025-11-18 18:43:15,110 | INFO     | [payload] control thread has finished
[2025-11-18 10:43:44] 2025-11-18 18:43:15,149 | INFO     | [payload] validate_pre thread has finished
[2025-11-18 10:43:44] 2025-11-18 18:43:15,464 | INFO     | all job control threads have been joined
[2025-11-18 10:43:44] 2025-11-18 18:43:15,620 | INFO     | [job] validate thread has finished
[2025-11-18 10:43:44] 2025-11-18 18:43:15,647 | INFO     | [data] control thread has finished
[2025-11-18 10:43:44] 2025-11-18 18:43:15,813 | INFO     | [data] copytool_out thread has finished
[2025-11-18 10:43:44] 2025-11-18 18:43:15,962 | INFO     | [job] create_data_payload thread has finished
[2025-11-18 10:43:44] 2025-11-18 18:43:16,150 | INFO     | [data] copytool_in thread has finished
[2025-11-18 10:43:44] 2025-11-18 18:43:16,239 | INFO     | [payload] failed_post thread has finished
[2025-11-18 10:43:44] 2025-11-18 18:43:16,468 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-18 10:43:44] 2025-11-18 18:43:16,470 | INFO     | [job] control thread has finished
[2025-11-18 10:43:44] 2025-11-18 18:43:16,991 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-18 10:43:44] 2025-11-18 18:43:17,474 | INFO     | [job] queue monitor thread has finished
[2025-11-18 10:43:44] 2025-11-18 18:43:21,000 | INFO     | [data] queue_monitor thread has finished
[2025-11-18 10:43:44] 2025-11-18 18:43:28,901 | INFO     | [monitor] cgroup control has ended
[2025-11-18 10:43:44] 2025-11-18 18:43:29,558 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139781206951744)>', '<ExcThread(monitor, started 139780314625792)>']
[2025-11-18 10:43:44] 2025-11-18 18:43:34,584 | INFO     | all workflow threads have been joined
[2025-11-18 10:43:44] 2025-11-18 18:43:34,584 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-18 10:43:44] 2025-11-18 18:43:34,584 | INFO     | traces error code: 0
[2025-11-18 10:43:44] 2025-11-18 18:43:34,584 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-18 10:43:44] 2025-11-18 18:43:43,551 | INFO     | PID=3860555 has CPU usage=1.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-18 10:43:44] 2025-11-18 18:43:43,552 | INFO     | .. there are 28 such processes running
[2025-11-18 10:43:44] 2025-11-18 18:43:43,552 | INFO     | found 0 job(s) in 20 queues
[2025-11-18 10:43:44] 2025-11-18 18:43:43,552 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-18 10:43:44] 2025-11-18 18:43:43,553 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-18 10:43:44] 2025-11-18 18:43:43,553 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-18 10:43:44] 2025-11-18 18:43:43,553 | INFO     | [monitor] control thread has ended
[2025-11-18 10:43:44] 2025-11-18 18:43:43,681 [wrapper] ==== pilot stdout END ====
[2025-11-18 10:43:44] 2025-11-18 18:43:43,701 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-18 10:43:44] 2025-11-18 18:43:43,737 [wrapper] pilotpid: 3860555
[2025-11-18 10:43:44] 2025-11-18 18:43:43,754 [wrapper] Pilot exit status: 0
[2025-11-18 10:43:44] 2025-11-18 18:43:43,881 [wrapper] pandaids: 6891583645
[2025-11-18 10:43:44] 2025-11-18 18:43:44,091 [wrapper] cleanup supervisor_pilot 3860561 3860556
[2025-11-18 10:43:44] 2025-11-18 18:43:44,094 [wrapper] Test setup, not cleaning
[2025-11-18 10:43:44] 2025-11-18 18:43:44,096 [wrapper] apfmon messages muted
[2025-11-18 10:43:44] 2025-11-18 18:43:44,104 [wrapper] ==== wrapper stdout END ====
[2025-11-18 10:43:44] 2025-11-18 18:43:44,114 [wrapper] ==== wrapper stderr END ====
[2025-11-18 10:43:44]  *** Error codes and diagnostics ***
[2025-11-18 10:43:44]     "exeErrorCode": 65,
[2025-11-18 10:43:44]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: \"IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 cannot be opened - STOP\"",
[2025-11-18 10:43:44]     "pilotErrorCode": 1305,
[2025-11-18 10:43:44]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: \"IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 canno",
[2025-11-18 10:43:44]  *** Listing of results directory ***
[2025-11-18 10:43:44] total 403308
[2025-11-18 10:43:44] -rw-r--r--. 1 boinc boinc    576529 Nov 18 08:45 pilot3.tar.gz
[2025-11-18 10:43:44] -rw-r--r--. 1 boinc boinc      5112 Nov 18 09:05 queuedata.json
[2025-11-18 10:43:44] -rwx------. 1 boinc boinc     36292 Nov 18 09:07 runpilot2-wrapper.sh
[2025-11-18 10:43:44] -rw-r--r--. 1 boinc boinc       100 Nov 18 10:37 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-18 10:43:44] -rwxr-xr-x. 1 boinc boinc      7986 Nov 18 10:37 run_atlas
[2025-11-18 10:43:44] -rw-r--r--. 1 boinc boinc       105 Nov 18 10:37 job.xml
[2025-11-18 10:43:44] -rw-r--r--. 1 boinc boinc      6628 Nov 18 10:37 init_data.xml
[2025-11-18 10:43:44] -rw-r--r--. 2 boinc boinc 408765667 Nov 18 10:37 EVNT.47493065._000433.pool.root.1
[2025-11-18 10:43:44] -rw-r--r--. 2 boinc boinc     15120 Nov 18 10:37 start_atlas.sh
[2025-11-18 10:43:44] drwxrwx--x. 2 boinc boinc      4096 Nov 18 10:37 shared
[2025-11-18 10:43:44] -rw-r--r--. 2 boinc boinc    590100 Nov 18 10:37 input.tar.gz
[2025-11-18 10:43:44] -rw-r--r--. 1 boinc boinc         0 Nov 18 10:37 boinc_lockfile
[2025-11-18 10:43:44] -rw-r--r--. 1 boinc boinc      2773 Nov 18 10:37 pandaJob.out
[2025-11-18 10:43:44] -rw-------. 1 boinc boinc    992798 Nov 18 10:38 agis_schedconf.cvmfs.json
[2025-11-18 10:43:44] -rw-------. 1 boinc boinc   1525063 Nov 18 10:38 agis_ddmendpoints.agis.ALL.json
[2025-11-18 10:43:44] drwx------. 5 boinc boinc      4096 Nov 18 10:38 pilot3
[2025-11-18 10:43:44] -rw-r--r--. 1 boinc boinc       524 Nov 18 10:40 boinc_task_state.xml
[2025-11-18 10:43:44] -rw-------. 1 boinc boinc       990 Nov 18 10:40 memory_monitor_summary.json
[2025-11-18 10:43:44] -rw-------. 1 boinc boinc     48168 Nov 18 10:40 log.47493068._004323.job.log.tgz.1
[2025-11-18 10:43:44] -rw-------. 1 boinc boinc     10336 Nov 18 10:43 heartbeat.json
[2025-11-18 10:43:44] -rw-r--r--. 1 boinc boinc      8192 Nov 18 10:43 boinc_mmap_file
[2025-11-18 10:43:44] -rw-r--r--. 1 boinc boinc        23 Nov 18 10:43 wrapper_checkpoint.txt
[2025-11-18 10:43:44] -rw-------. 1 boinc boinc       823 Nov 18 10:43 pilotlog.txt
[2025-11-18 10:43:44] -rw-------. 1 boinc boinc        95 Nov 18 10:43 pilot_heartbeat.json
[2025-11-18 10:43:44] -rw-------. 1 boinc boinc    101579 Nov 18 10:43 log.47493068._004323.job.log.1
[2025-11-18 10:43:44] -rw-------. 1 boinc boinc       186 Nov 18 10:43 output.list
[2025-11-18 10:43:44] -rw-r--r--. 1 boinc boinc       620 Nov 18 10:43 runtime_log
[2025-11-18 10:43:44] -rw-------. 1 boinc boinc    174080 Nov 18 10:43 result.tar.gz
[2025-11-18 10:43:44] -rw-r--r--. 1 boinc boinc      8528 Nov 18 10:43 runtime_log.err
[2025-11-18 10:43:44] -rw-------. 1 boinc boinc       645 Nov 18 10:43 hgxMDm9Lef8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm8xFKDm53Zctn.diag
[2025-11-18 10:43:44] -rw-r--r--. 1 boinc boinc     22496 Nov 18 10:43 stderr.txt
[2025-11-18 10:43:44] No HITS result produced
[2025-11-18 10:43:44]  *** Contents of shared directory: ***
[2025-11-18 10:43:44] total 399960
[2025-11-18 10:43:44] -rw-r--r--. 2 boinc boinc 408765667 Nov 18 10:37 ATLAS.root_0
[2025-11-18 10:43:44] -rw-r--r--. 2 boinc boinc     15120 Nov 18 10:37 start_atlas.sh
[2025-11-18 10:43:44] -rw-r--r--. 2 boinc boinc    590100 Nov 18 10:37 input.tar.gz
[2025-11-18 10:43:44] -rw-------. 1 boinc boinc    174080 Nov 18 10:43 result.tar.gz
10:43:46 (3856829): run_atlas exited; CPU time 40.314488
10:43:46 (3856829): called boinc_finish(0)

</stderr_txt>
]]>

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