Stderr output

<core_client_version>8.0.4</core_client_version>
<![CDATA[
<stderr_txt>
2025-11-18 23:34:52 (9512): vboxwrapper version 26210
2025-11-18 23:34:52 (9512): BOINC client version: 8.0.4
2025-11-18 23:34:53 (9512): Detected: VirtualBox VboxManage Interface (Version: 7.0.6)
2025-11-18 23:34:53 (9512): Successfully copied 'init_data.xml' to the shared directory.
2025-11-18 23:34:53 (9512): Create VM. (boinc_8e4868e46a8b4e2f, slot#1)
2025-11-18 23:34:54 (9512): Setting Memory Size for VM. (4600MB)
2025-11-18 23:34:54 (9512): Setting CPU Count for VM. (6)
2025-11-18 23:34:54 (9512): Setting Chipset Options for VM.
2025-11-18 23:34:54 (9512): Setting Graphics Controller Options for VM. (Driver: VBoxVGA, 16MB)
2025-11-18 23:34:55 (9512): Setting Boot Options for VM.
2025-11-18 23:34:55 (9512): Setting Network Configuration for NAT. (Driver: virtio)
2025-11-18 23:34:55 (9512): Enabling VM Network Access.
2025-11-18 23:34:56 (9512): Disabling USB Support for VM.
2025-11-18 23:34:56 (9512): Disabling COM Port Support for VM.
2025-11-18 23:34:56 (9512): Disabling LPT Port Support for VM.
2025-11-18 23:34:56 (9512): Disabling Audio Support for VM.
2025-11-18 23:34:57 (9512): Disabling Clipboard Support for VM.
2025-11-18 23:34:57 (9512): Disabling Drag and Drop Support for VM.
2025-11-18 23:34:57 (9512): Adding storage controller(s) to VM.
2025-11-18 23:34:58 (9512): Adding virtual disk drive to VM. (ATLAS_vbox_3.03_image.vdi)
2025-11-18 23:35:00 (9512): Adding VirtualBox Guest Additions to VM.
2025-11-18 23:35:00 (9512): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-11-18 23:35:00 (9512): forwarding host port 59066 to guest port 80
2025-11-18 23:35:00 (9512): Enabling remote desktop for VM.
2025-11-18 23:35:01 (9512): Required extension pack not installed, remote desktop not enabled.
2025-11-18 23:35:01 (9512): Enabling shared directory for VM.
2025-11-18 23:35:01 (9512): Starting VM using VBoxManage interface. (boinc_8e4868e46a8b4e2f, slot#1)
2025-11-18 23:35:06 (9512): Successfully started VM. (PID = '2608')
2025-11-18 23:35:06 (9512): Reporting VM Process ID to BOINC.
2025-11-18 23:35:06 (9512): Guest Log: BIOS: VirtualBox 7.0.6
2025-11-18 23:35:06 (9512): Guest Log: CPUID EDX: 0x178bfbff
2025-11-18 23:35:06 (9512): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-11-18 23:35:06 (9512): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-11-18 23:35:06 (9512): VM state change detected. (old = 'poweredoff', new = 'running')
2025-11-18 23:35:06 (9512): Detected: Web Application Enabled (http://localhost:59066)
2025-11-18 23:35:06 (9512): Preference change detected
2025-11-18 23:35:06 (9512): Setting CPU throttle for VM. (80%)
2025-11-18 23:35:07 (9512): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 180 seconds) or (Vbox_job.xml: 900 seconds))
2025-11-18 23:35:08 (9512): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-11-18 23:35:08 (9512): Guest Log: BIOS: Booting from Hard Disk...
2025-11-18 23:35:11 (9512): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-11-18 23:35:11 (9512): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-11-18 23:35:11 (9512): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-11-18 23:35:11 (9512): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-11-18 23:35:11 (9512): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-11-18 23:35:11 (9512): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-11-18 23:35:11 (9512): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-11-18 23:35:11 (9512): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-11-18 23:35:11 (9512): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-11-18 23:35:11 (9512): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-11-18 23:35:11 (9512): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-11-18 23:35:11 (9512): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-11-18 23:35:11 (9512): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-11-18 23:35:11 (9512): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-11-18 23:35:11 (9512): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-11-18 23:35:11 (9512): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-11-18 23:35:11 (9512): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-11-18 23:35:11 (9512): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-11-18 23:35:11 (9512): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-11-18 23:35:11 (9512): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-11-18 23:35:11 (9512): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-11-18 23:35:11 (9512): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-11-18 23:35:11 (9512): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-11-18 23:35:11 (9512): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-11-18 23:35:11 (9512): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-11-18 23:35:11 (9512): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-11-18 23:35:11 (9512): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-11-18 23:35:11 (9512): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-11-18 23:35:11 (9512): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-11-18 23:35:11 (9512): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-11-18 23:35:11 (9512): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-11-18 23:35:11 (9512): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-11-18 23:36:17 (9512): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-11-18 23:36:17 (9512): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-11-18 23:36:20 (9512): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-11-18 23:36:20 (9512): Guest Log: 00:00:00.000092 main     Log opened 2025-11-18T23:36:19.137940000Z
2025-11-18 23:36:20 (9512): Guest Log: 00:00:00.000167 main     OS Product: Linux
2025-11-18 23:36:20 (9512): Guest Log: 00:00:00.000190 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-11-18 23:36:20 (9512): Guest Log: 00:00:00.000206 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-11-18 23:36:20 (9512): Guest Log: 00:00:00.000221 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-11-18 23:36:20 (9512): Guest Log: 00:00:00.000222 main     Process ID: 1343
2025-11-18 23:36:20 (9512): Guest Log: 00:00:00.000222 main     Package type: LINUX_64BITS_GENERIC
2025-11-18 23:36:20 (9512): Guest Log: 00:00:00.000706 main     5.2.32 r132073 started. Verbose level = 0
2025-11-18 23:36:20 (9512): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-11-18 23:36:20 (9512): Guest Log: [INFO] Mounting shared directory
2025-11-18 23:36:20 (9512): Guest Log: [INFO] Checking for init_data.xml
2025-11-18 23:36:24 (9512): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-11-18 23:36:24 (9512): Guest Log: [INFO] Detected branch: prod
2025-11-18 23:36:24 (9512): Guest Log: This is the prod version of the ATLAS job wrapper
2025-11-18 23:36:24 (9512): Guest Log: Copying input files
2025-11-18 23:36:26 (9512): Guest Log: Copied input files into RunAtlas.
2025-11-18 23:36:26 (9512): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-11-18 23:36:26 (9512): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-11-18 23:36:26 (9512): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-11-18 23:36:26 (9512): Guest Log: Further information can be found at the LHC@home message board.
2025-11-18 23:36:30 (9512): Guest Log: 00:00:10.001956 timesync vgsvcTimeSyncWorker: Radical guest time change: 18 008 236 023 000ns (GuestNow=1 763 526 987 375 389 000 ns GuestLast=1 763 508 979 139 366 000 ns fSetTimeLastLoop=true )
2025-11-18 23:37:02 (9512): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-11-18 23:37:02 (9512): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-11-18 23:37:02 (9512): Guest Log: 2.6.3.0 1620 0 32036 153030 4 1 3117639 4096000 0 65024 0 0 n/a 0 0 http://s1bnl-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2025-11-18 23:37:02 (9512): Guest Log: copied the webapp to /var/www
2025-11-18 23:37:02 (9512): Guest Log: ATHENA_PROC_NUMBER=6
2025-11-18 23:37:02 (9512): Guest Log: ATHENA_CORE_NUMBER=6
2025-11-18 23:37:03 (9512): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-11-18 23:37:03 (9512): Guest Log:  *** Starting ATLAS job. (PandaID=6891565108 taskID=47493068) ***
2025-11-19 01:15:10 (9512): Status Report: Elapsed Time: '6000.000000'
2025-11-19 01:15:10 (9512): Status Report: CPU Time: '30024.687500'
2025-11-19 02:55:15 (9512): Status Report: Elapsed Time: '12000.506752'
2025-11-19 02:55:15 (9512): Status Report: CPU Time: '62417.656250'
2025-11-19 04:35:30 (9512): Status Report: Elapsed Time: '18001.182377'
2025-11-19 04:35:30 (9512): Status Report: CPU Time: '94859.890625'
2025-11-19 05:12:21 (9512): VM state change detected. (old = 'running', new = 'paused')
2025-11-19 09:43:36 (9512): VM state change detected. (old = 'paused', new = 'running')
2025-11-19 09:43:43 (9512): Guest Log: 05:35:59.351108 timesync vgsvcTimeSyncWorker: Radical host time change: 16 282 153 000 000ns (HostNow=1 763 563 419 583 000 000 ns HostLast=1 763 547 137 430 000 000 ns)
2025-11-19 09:43:53 (9512): Guest Log: 05:36:09.354024 timesync vgsvcTimeSyncWorker: Radical guest time change: 16 292 861 443 000ns (GuestNow=1 763 563 429 585 967 000 ns GuestLast=1 763 547 136 724 524 000 ns fSetTimeLastLoop=true )
2025-11-19 10:46:49 (9512): Status Report: Elapsed Time: '24001.182377'
2025-11-19 10:46:49 (9512): Status Report: CPU Time: '127302.562500'
2025-11-19 11:36:51 (9512): Guest Log:  *** Job finished ***
2025-11-19 11:36:51 (9512): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-11-19 11:36:51 (9512): Guest Log: 2025-11-19 16:36:15,602 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
2025-11-19 11:36:51 (9512): Guest Log: 2025-11-19 16:36:15,602 | WARNING  | will wait for a maximum of 300 s for threads to finish
2025-11-19 11:36:51 (9512): Guest Log: 2025-11-19 16:36:37,314 | INFO     | [monitor] cgroup control has ended
2025-11-19 11:36:51 (9512): Guest Log: 2025-11-19 16:36:39,319 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140497342363456)>', '<ExcThread(monitor, started 140496601069312)>']
2025-11-19 11:36:51 (9512): Guest Log: 2025-11-19 16:36:39,804 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-11-19 11:36:51 (9512): Guest Log: 2025-11-19 16:36:39,804 | INFO     | [monitor] control thread has ended
2025-11-19 11:36:51 (9512): Guest Log: 2025-11-19 16:36:44,325 | INFO     | all workflow threads have been joined
2025-11-19 11:36:51 (9512): Guest Log: 2025-11-19 16:36:44,325 | INFO     | end of generic workflow (traces error code: 0)
2025-11-19 11:36:51 (9512): Guest Log: 2025-11-19 16:36:44,325 | INFO     | traces error code: 0
2025-11-19 11:36:51 (9512): Guest Log: 2025-11-19 16:36:44,325 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-11-19 11:36:51 (9512): Guest Log: 2025-11-19 16:36:44,392 [wrapper] ==== pilot stdout END ====
2025-11-19 11:36:51 (9512): Guest Log: 2025-11-19 16:36:44,395 [wrapper] ==== wrapper stdout RESUME ====
2025-11-19 11:36:51 (9512): Guest Log: 2025-11-19 16:36:44,398 [wrapper] pilotpid: 6040
2025-11-19 11:36:51 (9512): Guest Log: 2025-11-19 16:36:44,401 [wrapper] Pilot exit status: 0
2025-11-19 11:36:51 (9512): Guest Log: 2025-11-19 16:36:44,411 [wrapper] pandaids: 6891565108
2025-11-19 11:36:51 (9512): Guest Log: 2025-11-19 16:36:44,430 [wrapper] cleanup supervisor_pilot  1773 6041
2025-11-19 11:36:51 (9512): Guest Log: 2025-11-19 16:36:44,433 [wrapper] Test setup, not cleaning
2025-11-19 11:36:51 (9512): Guest Log: 2025-11-19 16:36:44,436 [wrapper] apfmon messages muted
2025-11-19 11:36:51 (9512): Guest Log: 2025-11-19 16:36:44,439 [wrapper] ==== wrapper stdout END ====
2025-11-19 11:36:51 (9512): Guest Log: 2025-11-19 16:36:44,441 [wrapper] ==== wrapper stderr END ====
2025-11-19 11:36:51 (9512): Guest Log:  *** Error codes and diagnostics ***
2025-11-19 11:36:51 (9512): Guest Log:     "exeErrorCode": 0,
2025-11-19 11:36:51 (9512): Guest Log:     "exeErrorDiag": "",
2025-11-19 11:36:51 (9512): Guest Log:     "pilotErrorCode": 0,
2025-11-19 11:36:51 (9512): Guest Log:     "pilotErrorDiag": "",
2025-11-19 11:36:51 (9512): Guest Log:  *** Listing of results directory ***
2025-11-19 11:36:51 (9512): Guest Log: total 920988
2025-11-19 11:36:51 (9512): Guest Log: -rw-r--r--. 1 atlas atlas    576529 Nov 18 15:15 pilot3.tar.gz
2025-11-19 11:36:51 (9512): Guest Log: -rw-r--r--. 1 atlas atlas      5112 Nov 18 15:29 queuedata.json
2025-11-19 11:36:51 (9512): Guest Log: -rwx------. 1 atlas atlas     36292 Nov 18 15:30 runpilot2-wrapper.sh
2025-11-19 11:36:51 (9512): Guest Log: -rwxr-xr-x. 1 atlas atlas      8891 Nov 19 04:36 init_data.xml
2025-11-19 11:36:51 (9512): Guest Log: -rwxr-xr-x. 1 atlas atlas    590099 Nov 19 04:36 input.tar.gz
2025-11-19 11:36:51 (9512): Guest Log: -rwxr-xr-x. 1 atlas atlas     15120 Nov 19 04:36 start_atlas.sh
2025-11-19 11:36:51 (9512): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Nov 19 04:36 EVNT.47493065._000133.pool.root.1 -> /data/./ATLAS.root_0
2025-11-19 11:36:51 (9512): Guest Log: -rw-r--r--. 1 atlas atlas      2773 Nov 19 04:36 pandaJob.out
2025-11-19 11:36:51 (9512): Guest Log: -rw-------. 1 atlas atlas    992806 Nov 19 04:37 agis_schedconf.cvmfs.json
2025-11-19 11:36:51 (9512): Guest Log: drwx------. 5 atlas atlas      4096 Nov 19 04:37 pilot3
2025-11-19 11:36:51 (9512): Guest Log: -rw-------. 1 atlas atlas 929159383 Nov 19 16:35 HITS.47493068._001325.pool.root.1
2025-11-19 11:36:51 (9512): Guest Log: -rw-------. 1 atlas atlas      1036 Nov 19 16:35 memory_monitor_summary.json
2025-11-19 11:36:51 (9512): Guest Log: -rw-------. 1 atlas atlas   1525063 Nov 19 16:35 agis_ddmendpoints.agis.ALL.json
2025-11-19 11:36:51 (9512): Guest Log: -rw-------. 1 atlas atlas   1502770 Nov 19 16:35 log.47493068._001325.job.log.tgz.1
2025-11-19 11:36:51 (9512): Guest Log: -rw-------. 1 atlas atlas      8632 Nov 19 16:35 heartbeat.json
2025-11-19 11:36:51 (9512): Guest Log: -rw-------. 1 atlas atlas        98 Nov 19 16:36 pilot_heartbeat.json
2025-11-19 11:36:51 (9512): Guest Log: -rw-------. 1 atlas atlas      4805 Nov 19 16:36 pilotlog.txt
2025-11-19 11:36:51 (9512): Guest Log: -rw-------. 1 atlas atlas   3538396 Nov 19 16:36 log.47493068._001325.job.log.1
2025-11-19 11:36:51 (9512): Guest Log: -rw-------. 1 atlas atlas       353 Nov 19 16:36 output.list
2025-11-19 11:36:51 (9512): Guest Log: -rw-r--r--. 1 atlas atlas       620 Nov 19 16:36 runtime_log
2025-11-19 11:36:51 (9512): Guest Log: -rw-------. 1 atlas atlas   5058560 Nov 19 16:36 result.tar.gz
2025-11-19 11:36:51 (9512): Guest Log: -rw-r--r--. 1 atlas atlas      8652 Nov 19 16:36 runtime_log.err
2025-11-19 11:36:51 (9512): Guest Log: -rw-------. 1 atlas atlas       664 Nov 19 16:36 33wNDmcqcf8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmKIFKDmf0vjGo.diag
2025-11-19 11:36:51 (9512): Guest Log: Looking for outputfile HITS.47493068._001325.pool.root.1
2025-11-19 11:36:51 (9512): Guest Log: HITS file was successfully produced
2025-11-19 11:36:51 (9512): Guest Log: -rw-------. 1 atlas atlas 929159383 Nov 19 16:35 /home/atlas/RunAtlas/HITS.47493068._001325.pool.root.1
2025-11-19 11:36:53 (9512): Guest Log: Successfully finished the ATLAS job!
2025-11-19 11:36:53 (9512): Guest Log: Copying the results back to the shared directory!
2025-11-19 11:36:53 (9512): Guest Log:  *** Contents of shared directory: ***
2025-11-19 11:36:53 (9512): Guest Log: total 1314432
2025-11-19 11:36:53 (9512): Guest Log: -rwxrwxrwx. 1 root root 411135770 Nov 19 04:34 ATLAS.root_0
2025-11-19 11:36:53 (9512): Guest Log: -rwxrwxrwx. 1 root root 929159383 Nov 19  2025 HITS.pool.root.1
2025-11-19 11:36:53 (9512): Guest Log: -rwxrwxrwx. 1 root root      8891 Nov 19 04:34 init_data.xml
2025-11-19 11:36:53 (9512): Guest Log: -rwxrwxrwx. 1 root root    590099 Nov 18 18:41 input.tar.gz
2025-11-19 11:36:53 (9512): Guest Log: -rwxrwxrwx. 1 root root   5058560 Nov 19  2025 result.tar.gz
2025-11-19 11:36:53 (9512): Guest Log: -rwxrwxrwx. 1 root root     15120 Nov 18 18:41 start_atlas.sh
2025-11-19 11:36:53 (9512): Guest Log:  *** Success! Shutting down the machine. ***
2025-11-19 11:36:54 (9512): VM Completion File Detected.
2025-11-19 11:36:54 (9512): Powering off VM.
2025-11-19 11:36:54 (9512): Successfully stopped VM.
2025-11-19 11:36:54 (9512): Deregistering VM. (boinc_8e4868e46a8b4e2f, slot#1)
2025-11-19 11:36:54 (9512): Removing network bandwidth throttle group from VM.
2025-11-19 11:36:55 (9512): Removing VM from VirtualBox.
2025-11-19 11:37:00 (9512): called boinc_finish(0)

</stderr_txt>
]]>

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