Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
20:46:59 (28841): wrapper (7.7.26015): starting
20:46:59 (28841): wrapper: running run_atlas (--nthreads 8)
[2025-11-19 20:46:59] Arguments: --nthreads 8
[2025-11-19 20:46:59] Threads: 8
[2025-11-19 20:46:59] Checking for CVMFS
[2025-11-19 20:47:00] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-19 20:47:00] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-19 20:47:00] Running cvmfs_config stat atlas.cern.ch
[2025-11-19 20:47:01] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-19 20:47:01] 2.11.2.0 25379 275679 135916 153055 2 235 21658042 25165824 4582 130560 3 138837191 99.886 78604571 3095 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-19 20:47:01] CVMFS is ok
[2025-11-19 20:47:01] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-19 20:47:01] Checking for apptainer binary...
[2025-11-19 20:47:01] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-19 20:47:01] Running /usr/bin/apptainer --version
[2025-11-19 20:47:01] apptainer version 1.3.2-1.el7
[2025-11-19 20:47:01] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-19 20:47:06] cg-vwn336.simple-grid.lan
[2025-11-19 20:47:06] apptainer works
[2025-11-19 20:47:06] Set ATHENA_PROC_NUMBER=8
[2025-11-19 20:47:06] Set ATHENA_CORE_NUMBER=8
[2025-11-19 20:47:06] Starting ATLAS job with PandaID=6891558335
[2025-11-19 20:47:06] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-20 21:26:24]  *** The last 200 lines of the pilot log: ***
[2025-11-20 21:26:24] 2025-11-20 20:25:24,741 | INFO     | monitor loop #5920: job 0:6891558335 is in state 'finished'
[2025-11-20 21:26:24] 2025-11-20 20:25:24,741 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-20 21:26:24] 2025-11-20 20:25:26,667 | INFO     | time since job start (88486s) is within the limit (172800.0s)
[2025-11-20 21:26:24] 2025-11-20 20:25:27,253 | INFO     | monitor loop #5921: job 0:6891558335 is in state 'finished'
[2025-11-20 21:26:24] 2025-11-20 20:25:27,253 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-20 21:26:24] 2025-11-20 20:25:28,673 | INFO     | time since job start (88488s) is within the limit (172800.0s)
[2025-11-20 21:26:24] 2025-11-20 20:25:29,766 | INFO     | monitor loop #5922: job 0:6891558335 is in state 'finished'
[2025-11-20 21:26:24] 2025-11-20 20:25:29,766 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-20 21:26:24] 2025-11-20 20:25:30,683 | INFO     | time since job start (88490s) is within the limit (172800.0s)
[2025-11-20 21:26:24] 2025-11-20 20:25:32,271 | INFO     | monitor loop #5923: job 0:6891558335 is in state 'finished'
[2025-11-20 21:26:24] 2025-11-20 20:25:32,271 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-20 21:26:24] 2025-11-20 20:25:32,690 | INFO     | time since job start (88492s) is within the limit (172800.0s)
[2025-11-20 21:26:24] 2025-11-20 20:25:34,697 | INFO     | time since job start (88494s) is within the limit (172800.0s)
[2025-11-20 21:26:24] 2025-11-20 20:25:34,776 | INFO     | monitor loop #5924: job 0:6891558335 is in state 'finished'
[2025-11-20 21:26:24] 2025-11-20 20:25:34,776 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-20 21:26:24] 2025-11-20 20:25:35,744 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-20 21:26:24] 2025-11-20 20:25:35,745 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-11-20 21:26:24] 2025-11-20 20:25:35,747 | INFO     | using path: /var/lib/boinc/slots/3/PanDA_Pilot-6891558335/memory_monitor_summary.json (trf name=prmon)
[2025-11-20 21:26:24] 2025-11-20 20:25:35,747 | INFO     | extracted standard info from prmon json
[2025-11-20 21:26:24] 2025-11-20 20:25:35,747 | INFO     | extracted standard memory fields from prmon json
[2025-11-20 21:26:24] 2025-11-20 20:25:35,748 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-20 21:26:24] 2025-11-20 20:25:35,795 | INFO     | fitting pss+swap vs Time
[2025-11-20 21:26:24] 2025-11-20 20:25:35,798 | INFO     | sum of square deviations: 927833312517.5938
[2025-11-20 21:26:24] 2025-11-20 20:25:35,867 | INFO     | sum of deviations: 3872250824458.1904
[2025-11-20 21:26:24] 2025-11-20 20:25:35,868 | INFO     | mean x: 1763626253.1943095
[2025-11-20 21:26:24] 2025-11-20 20:25:35,868 | INFO     | mean y: 2840307.6814712007
[2025-11-20 21:26:24] 2025-11-20 20:25:35,868 | INFO     | intersect: -7357536950.640215
[2025-11-20 21:26:24] 2025-11-20 20:25:35,870 | INFO     | chi2: 25.592577642329946
[2025-11-20 21:26:24] 2025-11-20 20:25:35,872 | INFO     | sum of square deviations: 918209080210.4375
[2025-11-20 21:26:24] 2025-11-20 20:25:35,934 | INFO     | sum of deviations: 4352269335165.063
[2025-11-20 21:26:24] 2025-11-20 20:25:35,935 | INFO     | mean x: 1763626100.698468
[2025-11-20 21:26:24] 2025-11-20 20:25:35,935 | INFO     | mean y: 2847912.983983287
[2025-11-20 21:26:24] 2025-11-20 20:25:35,935 | INFO     | intersect: -8356659700.475383
[2025-11-20 21:26:24] 2025-11-20 20:25:35,937 | INFO     | chi2: 22.378282038211655
[2025-11-20 21:26:24] 2025-11-20 20:25:35,937 | INFO     | current chi2=22.378282038211655 (change=12.559483648110023 %)
[2025-11-20 21:26:24] 2025-11-20 20:25:35,937 | INFO     | right removable region: 1435
[2025-11-20 21:26:24] 2025-11-20 20:25:35,939 | INFO     | sum of square deviations: 918208030400.4366
[2025-11-20 21:26:24] 2025-11-20 20:25:36,055 | INFO     | sum of deviations: 3259445240014.059
[2025-11-20 21:26:24] 2025-11-20 20:25:36,055 | INFO     | mean x: 1763626405.698468
[2025-11-20 21:26:24] 2025-11-20 20:25:36,055 | INFO     | mean y: 2850016.662952646
[2025-11-20 21:26:24] 2025-11-20 20:25:36,055 | INFO     | intersect: -6257652508.794204
[2025-11-20 21:26:24] 2025-11-20 20:25:36,059 | INFO     | chi2: 20.659782951815796
[2025-11-20 21:26:24] 2025-11-20 20:25:36,059 | INFO     | current chi2=20.659782951815796 (change=19.274317575402574 %)
[2025-11-20 21:26:24] 2025-11-20 20:25:36,059 | INFO     | left removable region: 10
[2025-11-20 21:26:24] 2025-11-20 20:25:36,061 | INFO     | sum of square deviations: 897268449730.5138
[2025-11-20 21:26:24] 2025-11-20 20:25:36,122 | INFO     | sum of deviations: 3300953318351.216
[2025-11-20 21:26:24] 2025-11-20 20:25:36,122 | INFO     | mean x: 1763626375.2077193
[2025-11-20 21:26:24] 2025-11-20 20:25:36,123 | INFO     | mean y: 2868087.634385965
[2025-11-20 21:26:24] 2025-11-20 20:25:36,123 | INFO     | intersect: -6485322082.567325
[2025-11-20 21:26:24] 2025-11-20 20:25:36,124 | INFO     | chi2: 12.881723259821795
[2025-11-20 21:26:24] 2025-11-20 20:25:36,125 | INFO     | current memory leak: 3.68 B/s (using 1425 data points, chi2=12.88)
[2025-11-20 21:26:24] 2025-11-20 20:25:36,127 | INFO     | could have reported an average CPU frequency of 1999 MHz (49 samples)
[2025-11-20 21:26:24] 2025-11-20 20:25:36,127 | INFO     | ..............................
[2025-11-20 21:26:24] 2025-11-20 20:25:36,128 | INFO     | . Timing measurements:
[2025-11-20 21:26:24] 2025-11-20 20:25:36,129 | INFO     | . get job = 0 s
[2025-11-20 21:26:24] 2025-11-20 20:25:36,129 | INFO     | . initial setup = 5 s
[2025-11-20 21:26:24] 2025-11-20 20:25:36,129 | INFO     | . payload setup = 135 s
[2025-11-20 21:26:24] 2025-11-20 20:25:36,129 | INFO     | . stage-in = 0 s
[2025-11-20 21:26:24] 2025-11-20 20:25:36,129 | INFO     | . payload execution = 88056 s
[2025-11-20 21:26:24] 2025-11-20 20:25:36,129 | INFO     | . stage-out = 7 s
[2025-11-20 21:26:24] 2025-11-20 20:25:36,129 | INFO     | . log creation = 1 s
[2025-11-20 21:26:24] 2025-11-20 20:25:36,129 | INFO     | ..............................
[2025-11-20 21:26:24] 2025-11-20 20:25:36,261 | INFO     | 
[2025-11-20 21:26:24] 2025-11-20 20:25:36,261 | INFO     | job summary report
[2025-11-20 21:26:24] 2025-11-20 20:25:36,261 | INFO     | --------------------------------------------------
[2025-11-20 21:26:24] 2025-11-20 20:25:36,261 | INFO     | PanDA job id: 6891558335
[2025-11-20 21:26:24] 2025-11-20 20:25:36,261 | INFO     | task id: 47493068
[2025-11-20 21:26:24] 2025-11-20 20:25:36,261 | INFO     | errors: (none)
[2025-11-20 21:26:24] 2025-11-20 20:25:36,261 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-20 21:26:24] 2025-11-20 20:25:36,261 | INFO     | pilot state: finished 
[2025-11-20 21:26:24] 2025-11-20 20:25:36,262 | INFO     | transexitcode: 0
[2025-11-20 21:26:24] 2025-11-20 20:25:36,262 | INFO     | exeerrorcode: 0
[2025-11-20 21:26:24] 2025-11-20 20:25:36,262 | INFO     | exeerrordiag: 
[2025-11-20 21:26:24] 2025-11-20 20:25:36,262 | INFO     | exitcode: 0
[2025-11-20 21:26:24] 2025-11-20 20:25:36,262 | INFO     | exitmsg: OK
[2025-11-20 21:26:24] 2025-11-20 20:25:36,262 | INFO     | cpuconsumptiontime: 326724 s
[2025-11-20 21:26:24] 2025-11-20 20:25:36,262 | INFO     | nevents: 1000
[2025-11-20 21:26:24] 2025-11-20 20:25:36,262 | INFO     | neventsw: 0
[2025-11-20 21:26:24] 2025-11-20 20:25:36,262 | INFO     | pid: 6780
[2025-11-20 21:26:24] 2025-11-20 20:25:36,262 | INFO     | pgrp: 6780
[2025-11-20 21:26:24] 2025-11-20 20:25:36,262 | INFO     | corecount: 8
[2025-11-20 21:26:24] 2025-11-20 20:25:36,263 | INFO     | event service: False
[2025-11-20 21:26:24] 2025-11-20 20:25:36,263 | INFO     | sizes: {0: 2296969, 1: 2297224, 12: 2297224, 23: 2297252, 34: 2297280, 45: 2297308, 55: 2297464, 66: 2297492, 77: 2297520, 88: 2297576, 98: 2297604, 100: 2298174, 
[2025-11-20 21:26:24] 2025-11-20 20:25:36,263 | INFO     | --------------------------------------------------
[2025-11-20 21:26:24] 2025-11-20 20:25:36,263 | INFO     | 
[2025-11-20 21:26:24] 2025-11-20 20:25:36,263 | INFO     | executing command: ls -lF /var/lib/boinc/slots/3
[2025-11-20 21:26:24] 2025-11-20 20:25:36,711 | INFO     | time since job start (88496s) is within the limit (172800.0s)
[2025-11-20 21:26:24] 2025-11-20 20:25:36,726 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-20 21:26:24] 2025-11-20 20:25:36,727 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-20 21:26:24] 2025-11-20 20:25:36,727 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-20 21:26:24] 2025-11-20 20:25:36,727 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-20 21:26:24] 2025-11-20 20:25:36,727 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-20 21:26:24] 2025-11-20 20:25:36,727 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-20 21:26:24] 2025-11-20 20:25:36,727 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-20 21:26:24] 2025-11-20 20:25:36,727 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-20 21:26:24] 2025-11-20 20:25:36,727 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-20 21:26:24] 2025-11-20 20:25:36,727 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-20 21:26:24] 2025-11-20 20:25:36,727 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-20 21:26:24] 2025-11-20 20:25:36,727 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-20 21:26:24] 2025-11-20 20:25:36,727 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-20 21:26:24] 2025-11-20 20:25:36,728 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-20 21:26:24] 2025-11-20 20:25:36,728 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-20 21:26:24] 2025-11-20 20:25:36,728 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-20 21:26:24] 2025-11-20 20:25:36,728 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-20 21:26:24] 2025-11-20 20:25:36,728 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-20 21:26:24] 2025-11-20 20:25:36,728 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-20 21:26:24] 2025-11-20 20:25:36,728 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-20 21:26:24] 2025-11-20 20:25:36,728 | INFO     | job 6891558335 has completed (purged errors)
[2025-11-20 21:26:24] 2025-11-20 20:25:36,729 | INFO     | overall cleanup function is called
[2025-11-20 21:26:24] 2025-11-20 20:25:37,750 | INFO     | --- collectZombieJob: --- 10, [6780]
[2025-11-20 21:26:24] 2025-11-20 20:25:37,750 | INFO     | zombie collector waiting for pid 6780
[2025-11-20 21:26:24] 2025-11-20 20:25:37,750 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-20 21:26:24] 2025-11-20 20:25:37,750 | INFO     | collected zombie processes
[2025-11-20 21:26:24] 2025-11-20 20:25:37,750 | INFO     | will attempt to kill all subprocesses of pid=6780
[2025-11-20 21:26:24] 2025-11-20 20:25:37,897 | INFO     | process IDs to be killed: [6780] (in reverse order)
[2025-11-20 21:26:24] 2025-11-20 20:25:39,512 | WARNING  | found no corresponding commands to process id(s)
[2025-11-20 21:26:24] 2025-11-20 20:25:39,513 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-20 21:26:24] 2025-11-20 20:25:39,516 | INFO     | did not find any defunct processes belonging to 6780
[2025-11-20 21:26:24] 2025-11-20 20:25:39,519 | INFO     | did not find any defunct processes belonging to 6780
[2025-11-20 21:26:24] 2025-11-20 20:25:39,566 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-20 21:26:24] 2025-11-20 20:25:39,567 | INFO     | ready for new job
[2025-11-20 21:26:24] 2025-11-20 20:25:39,567 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-20 21:26:24] 2025-11-20 20:25:39,573 | INFO     | ***************************************
[2025-11-20 21:26:24] 2025-11-20 20:25:39,574 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-20 21:26:24] 2025-11-20 20:25:39,574 | INFO     | ***************************************
[2025-11-20 21:26:24] 2025-11-20 20:25:39,574 | INFO     | 
[2025-11-20 21:26:24] 2025-11-20 20:25:39,575 | INFO     | pilot is running in a VM
[2025-11-20 21:26:24] 2025-11-20 20:25:39,575 | INFO     | architecture information:
[2025-11-20 21:26:24] 2025-11-20 20:25:39,587 | INFO     | executing command: cat /etc/os-release
[2025-11-20 21:26:24] 2025-11-20 20:25:39,846 | INFO     | cat /etc/os-release:
[2025-11-20 21:26:24] NAME="CentOS Linux"
[2025-11-20 21:26:24] VERSION="7 (Core)"
[2025-11-20 21:26:24] ID="centos"
[2025-11-20 21:26:24] ID_LIKE="rhel fedora"
[2025-11-20 21:26:24] VERSION_ID="7"
[2025-11-20 21:26:24] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-20 21:26:24] ANSI_COLOR="0;31"
[2025-11-20 21:26:24] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-20 21:26:24] HOME_URL="https://www.centos.org/"
[2025-11-20 21:26:24] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-20 21:26:24] 
[2025-11-20 21:26:24] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-20 21:26:24] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-20 21:26:24] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-20 21:26:24] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-20 21:26:24] 
[2025-11-20 21:26:24] 2025-11-20 20:25:39,846 | INFO     | ***************************************
[2025-11-20 21:26:24] 2025-11-20 20:25:40,350 | INFO     | executing command: df -mP /var/lib/boinc/slots/3
[2025-11-20 21:26:24] 2025-11-20 20:25:40,561 | INFO     | sufficient remaining disk space (494904803328 B)
[2025-11-20 21:26:24] 2025-11-20 20:25:40,561 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-20 21:26:24] 2025-11-20 20:25:40,562 | INFO     | current server update state: UPDATING_FINAL
[2025-11-20 21:26:24] 2025-11-20 20:25:40,562 | INFO     | update_server=False
[2025-11-20 21:26:24] 2025-11-20 20:25:40,562 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-20 21:26:24] 2025-11-20 20:25:40,689 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-20 21:26:24] 2025-11-20 20:25:40,812 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-20 21:26:24] 2025-11-20 20:25:40,812 | INFO     | aborting loop
[2025-11-20 21:26:24] 2025-11-20 20:25:41,276 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-20 21:26:24] 2025-11-20 20:25:41,297 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-20 21:26:24] 2025-11-20 20:25:41,568 | INFO     | [job] retrieve thread has finished
[2025-11-20 21:26:24] 2025-11-20 20:25:41,613 | INFO     | all data control threads have been joined
[2025-11-20 21:26:24] 2025-11-20 20:25:41,638 | INFO     | [payload] validate_pre thread has finished
[2025-11-20 21:26:24] 2025-11-20 20:25:41,672 | INFO     | [data] copytool_in thread has finished
[2025-11-20 21:26:24] 2025-11-20 20:25:41,818 | INFO     | [job] job monitor thread has finished
[2025-11-20 21:26:24] 2025-11-20 20:25:41,926 | INFO     | all job control threads have been joined
[2025-11-20 21:26:24] 2025-11-20 20:25:41,936 | INFO     | [payload] failed_post thread has finished
[2025-11-20 21:26:24] 2025-11-20 20:25:42,061 | INFO     | [payload] execute_payloads thread has finished
[2025-11-20 21:26:24] 2025-11-20 20:25:42,075 | INFO     | all payload control threads have been joined
[2025-11-20 21:26:24] 2025-11-20 20:25:42,127 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-20 21:26:24] 2025-11-20 20:25:42,282 | INFO     | [job] queue monitor thread has finished
[2025-11-20 21:26:24] 2025-11-20 20:25:42,423 | INFO     | [job] validate thread has finished
[2025-11-20 21:26:24] 2025-11-20 20:25:42,495 | INFO     | [job] create_data_payload thread has finished
[2025-11-20 21:26:24] 2025-11-20 20:25:42,619 | INFO     | [data] control thread has finished
[2025-11-20 21:26:24] 2025-11-20 20:25:42,696 | INFO     | [data] copytool_out thread has finished
[2025-11-20 21:26:24] 2025-11-20 20:25:42,932 | INFO     | [job] control thread has finished
[2025-11-20 21:26:24] 2025-11-20 20:25:43,081 | INFO     | [payload] control thread has finished
[2025-11-20 21:26:24] 2025-11-20 20:25:43,108 | INFO     | [payload] validate_post thread has finished
[2025-11-20 21:26:24] 2025-11-20 20:25:45,306 | INFO     | [data] queue_monitor thread has finished
[2025-11-20 21:26:24] 2025-11-20 20:26:09,928 | INFO     | PID=32609 has CPU usage=1.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-20 21:26:24] 2025-11-20 20:26:09,928 | INFO     | .. there are 9 such processes running
[2025-11-20 21:26:24] 2025-11-20 20:26:09,929 | INFO     | found 0 job(s) in 20 queues
[2025-11-20 21:26:24] 2025-11-20 20:26:09,929 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-20 21:26:24] 2025-11-20 20:26:09,929 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-20 21:26:24] 2025-11-20 20:26:14,748 | INFO     | [monitor] cgroup control has ended
[2025-11-20 21:26:24] 2025-11-20 20:26:15,592 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140298240534336)>', '<ExcThread(monitor, started 140297723967232)>']
[2025-11-20 21:26:24] 2025-11-20 20:26:15,965 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-20 21:26:24] 2025-11-20 20:26:15,965 | INFO     | [monitor] control thread has ended
[2025-11-20 21:26:24] 2025-11-20 20:26:20,618 | INFO     | all workflow threads have been joined
[2025-11-20 21:26:24] 2025-11-20 20:26:20,618 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-20 21:26:24] 2025-11-20 20:26:20,618 | INFO     | traces error code: 0
[2025-11-20 21:26:24] 2025-11-20 20:26:20,618 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-20 21:26:24] 2025-11-20 20:26:20,971 [wrapper] ==== pilot stdout END ====
[2025-11-20 21:26:24] 2025-11-20 20:26:21,077 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-20 21:26:24] 2025-11-20 20:26:21,188 [wrapper] pilotpid: 32609
[2025-11-20 21:26:24] 2025-11-20 20:26:21,299 [wrapper] Pilot exit status: 0
[2025-11-20 21:26:24] 2025-11-20 20:26:21,730 [wrapper] pandaids: 6891558335
[2025-11-20 21:26:24] 2025-11-20 20:26:22,478 [wrapper] cleanup supervisor_pilot  9768 32610
[2025-11-20 21:26:24] 2025-11-20 20:26:22,571 [wrapper] Test setup, not cleaning
[2025-11-20 21:26:24] 2025-11-20 20:26:22,665 [wrapper] apfmon messages muted
[2025-11-20 21:26:24] 2025-11-20 20:26:22,775 [wrapper] ==== wrapper stdout END ====
[2025-11-20 21:26:24] 2025-11-20 20:26:22,866 [wrapper] ==== wrapper stderr END ====
[2025-11-20 21:26:24]  *** Error codes and diagnostics ***
[2025-11-20 21:26:24]     "exeErrorCode": 0,
[2025-11-20 21:26:24]     "exeErrorDiag": "",
[2025-11-20 21:26:24]     "pilotErrorCode": 0,
[2025-11-20 21:26:24]     "pilotErrorDiag": "",
[2025-11-20 21:26:24]  *** Listing of results directory ***
[2025-11-20 21:26:24] total 1311512
[2025-11-20 21:26:24] -rw-r--r--. 1 boinc boinc    576529 Nov 18 16:15 pilot3.tar.gz
[2025-11-20 21:26:24] -rwx------. 1 boinc boinc     36292 Nov 18 16:23 runpilot2-wrapper.sh
[2025-11-20 21:26:24] -rw-r--r--. 1 boinc boinc      5112 Nov 18 16:23 queuedata.json
[2025-11-20 21:26:24] -rw-r--r--. 1 boinc boinc       100 Nov 19 20:46 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-20 21:26:24] -rwxr-xr-x. 1 boinc boinc      7986 Nov 19 20:46 run_atlas
[2025-11-20 21:26:24] -rw-r--r--. 1 boinc boinc       105 Nov 19 20:46 job.xml
[2025-11-20 21:26:24] -rw-r--r--. 1 boinc boinc      6390 Nov 19 20:46 init_data.xml
[2025-11-20 21:26:24] -rw-r--r--. 2 boinc boinc 408824106 Nov 19 20:46 EVNT.47493065._000054.pool.root.1
[2025-11-20 21:26:24] -rw-r--r--. 2 boinc boinc     15120 Nov 19 20:46 start_atlas.sh
[2025-11-20 21:26:24] drwxrwx--x. 2 boinc boinc        68 Nov 19 20:46 shared
[2025-11-20 21:26:24] -rw-r--r--. 2 boinc boinc    590091 Nov 19 20:46 input.tar.gz
[2025-11-20 21:26:24] -rw-r--r--. 1 boinc boinc         0 Nov 19 20:46 boinc_lockfile
[2025-11-20 21:26:24] -rw-r--r--. 1 boinc boinc      2771 Nov 19 20:47 pandaJob.out
[2025-11-20 21:26:24] -rw-------. 1 boinc boinc    989451 Nov 19 20:50 agis_schedconf.cvmfs.json
[2025-11-20 21:26:24] drwx------. 5 boinc boinc      4096 Nov 19 20:50 pilot3
[2025-11-20 21:26:24] -rw-r--r--. 1 boinc boinc       533 Nov 20 21:03 boinc_task_state.xml
[2025-11-20 21:26:24] -rw-------. 1 boinc boinc 901648565 Nov 20 21:22 HITS.47493068._000537.pool.root.1
[2025-11-20 21:26:24] -rw-------. 1 boinc boinc      1028 Nov 20 21:23 memory_monitor_summary.json
[2025-11-20 21:26:24] -rw-------. 1 boinc boinc   1526164 Nov 20 21:24 agis_ddmendpoints.agis.ALL.json
[2025-11-20 21:26:24] -rw-------. 1 boinc boinc   2514537 Nov 20 21:24 log.47493068._000537.job.log.tgz.1
[2025-11-20 21:26:24] -rw-------. 1 boinc boinc      8625 Nov 20 21:25 heartbeat.json
[2025-11-20 21:26:24] -rw-r--r--. 1 boinc boinc      8192 Nov 20 21:26 boinc_mmap_file
[2025-11-20 21:26:24] -rw-r--r--. 1 boinc boinc        29 Nov 20 21:26 wrapper_checkpoint.txt
[2025-11-20 21:26:24] -rw-------. 1 boinc boinc        95 Nov 20 21:26 pilot_heartbeat.json
[2025-11-20 21:26:24] -rw-------. 1 boinc boinc      4884 Nov 20 21:26 pilotlog.txt
[2025-11-20 21:26:24] -rw-------. 1 boinc boinc  11787273 Nov 20 21:26 log.47493068._000537.job.log.1
[2025-11-20 21:26:24] -rw-------. 1 boinc boinc       353 Nov 20 21:26 output.list
[2025-11-20 21:26:24] -rw-r--r--. 1 boinc boinc       620 Nov 20 21:26 runtime_log
[2025-11-20 21:26:24] -rw-------. 1 boinc boinc  14325760 Nov 20 21:26 result.tar.gz
[2025-11-20 21:26:24] -rw-r--r--. 1 boinc boinc      8703 Nov 20 21:26 runtime_log.err
[2025-11-20 21:26:24] -rw-------. 1 boinc boinc       662 Nov 20 21:26 9dyMDmTjcf8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmUJFKDmnLGt0m.diag
[2025-11-20 21:26:24] -rw-r--r--. 1 boinc boinc     21434 Nov 20 21:26 stderr.txt
[2025-11-20 21:26:25] HITS file was successfully produced:
[2025-11-20 21:26:25] -rw-------. 1 boinc boinc 901648565 Nov 20 21:22 shared/HITS.pool.root.1
[2025-11-20 21:26:25]  *** Contents of shared directory: ***
[2025-11-20 21:26:25] total 1294352
[2025-11-20 21:26:25] -rw-r--r--. 2 boinc boinc 408824106 Nov 19 20:46 ATLAS.root_0
[2025-11-20 21:26:25] -rw-r--r--. 2 boinc boinc     15120 Nov 19 20:46 start_atlas.sh
[2025-11-20 21:26:25] -rw-r--r--. 2 boinc boinc    590091 Nov 19 20:46 input.tar.gz
[2025-11-20 21:26:25] -rw-------. 1 boinc boinc 901648565 Nov 20 21:22 HITS.pool.root.1
[2025-11-20 21:26:25] -rw-------. 1 boinc boinc  14325760 Nov 20 21:26 result.tar.gz
21:26:26 (28841): run_atlas exited; CPU time 327267.162047
21:26:26 (28841): called boinc_finish(0)

</stderr_txt>
]]>

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