Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
21:55:43 (22127): wrapper (7.7.26015): starting
21:55:43 (22127): wrapper: running run_atlas (--nthreads 8)
[2025-11-19 21:55:43] Arguments: --nthreads 8
[2025-11-19 21:55:43] Threads: 8
[2025-11-19 21:55:43] Checking for CVMFS
[2025-11-19 21:55:44] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-19 21:55:45] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-19 21:55:45] Running cvmfs_config stat atlas.cern.ch
[2025-11-19 21:55:46] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-19 21:55:46] 2.11.2.0 10419 75691 97024 153056 1 247 13934500 25165824 4201 130560 2 23880255 99.866 12995194 1752 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-19 21:55:46] CVMFS is ok
[2025-11-19 21:55:46] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-19 21:55:46] Checking for apptainer binary...
[2025-11-19 21:55:46] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-19 21:55:46] Running /usr/bin/apptainer --version
[2025-11-19 21:55:46] apptainer version 1.3.2-1.el7
[2025-11-19 21:55:46] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-19 21:55:53] cg-vwn422.simple-grid.lan
[2025-11-19 21:55:53] apptainer works
[2025-11-19 21:55:53] Set ATHENA_PROC_NUMBER=8
[2025-11-19 21:55:53] Set ATHENA_CORE_NUMBER=8
[2025-11-19 21:55:53] Starting ATLAS job with PandaID=6891582181
[2025-11-19 21:55:53] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/7 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-20 22:41:41]  *** The last 200 lines of the pilot log: ***
[2025-11-20 22:41:41] 2025-11-20 21:40:28,993 | INFO     | monitor loop #5892: job 0:6891582181 is in state 'finished'
[2025-11-20 22:41:41] 2025-11-20 21:40:28,993 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-20 22:41:41] 2025-11-20 21:40:30,199 | INFO     | time since job start (88891s) is within the limit (172800.0s)
[2025-11-20 22:41:41] 2025-11-20 21:40:31,496 | INFO     | monitor loop #5893: job 0:6891582181 is in state 'finished'
[2025-11-20 22:41:41] 2025-11-20 21:40:31,496 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-20 22:41:41] 2025-11-20 21:40:32,208 | INFO     | time since job start (88893s) is within the limit (172800.0s)
[2025-11-20 22:41:41] 2025-11-20 21:40:34,003 | INFO     | monitor loop #5894: job 0:6891582181 is in state 'finished'
[2025-11-20 22:41:41] 2025-11-20 21:40:34,003 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-20 22:41:41] 2025-11-20 21:40:34,214 | INFO     | time since job start (88895s) is within the limit (172800.0s)
[2025-11-20 22:41:41] 2025-11-20 21:40:36,220 | INFO     | time since job start (88897s) is within the limit (172800.0s)
[2025-11-20 22:41:41] 2025-11-20 21:40:36,507 | INFO     | monitor loop #5895: job 0:6891582181 is in state 'finished'
[2025-11-20 22:41:41] 2025-11-20 21:40:36,507 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-20 22:41:41] 2025-11-20 21:40:37,356 | INFO     | PID=25907 has CPU usage=14.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-20 22:41:41] 2025-11-20 21:40:37,356 | INFO     | .. there are 9 such processes running
[2025-11-20 22:41:41] 2025-11-20 21:40:38,098 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-20 22:41:41] 2025-11-20 21:40:38,099 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-11-20 22:41:41] 2025-11-20 21:40:38,101 | INFO     | using path: /var/lib/boinc/slots/7/PanDA_Pilot-6891582181/memory_monitor_summary.json (trf name=prmon)
[2025-11-20 22:41:41] 2025-11-20 21:40:38,102 | INFO     | extracted standard info from prmon json
[2025-11-20 22:41:41] 2025-11-20 21:40:38,102 | INFO     | extracted standard memory fields from prmon json
[2025-11-20 22:41:41] 2025-11-20 21:40:38,102 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-20 22:41:41] 2025-11-20 21:40:38,133 | INFO     | fitting pss+swap vs Time
[2025-11-20 22:41:41] 2025-11-20 21:40:38,136 | INFO     | sum of square deviations: 959083647985.8914
[2025-11-20 22:41:41] 2025-11-20 21:40:38,190 | INFO     | sum of deviations: 2875206100962.734
[2025-11-20 22:41:41] 2025-11-20 21:40:38,191 | INFO     | mean x: 1763630407.3335621
[2025-11-20 22:41:41] 2025-11-20 21:40:38,191 | INFO     | mean y: 2851956.788606726
[2025-11-20 22:41:41] 2025-11-20 21:40:38,191 | INFO     | intersect: -5284279064.220568
[2025-11-20 22:41:41] 2025-11-20 21:40:38,194 | INFO     | chi2: 13.692164197290852
[2025-11-20 22:41:41] 2025-11-20 21:40:38,196 | INFO     | sum of square deviations: 949244186326.967
[2025-11-20 22:41:41] 2025-11-20 21:40:38,251 | INFO     | sum of deviations: 3358369482306.494
[2025-11-20 22:41:41] 2025-11-20 21:40:38,251 | INFO     | mean x: 1763630254.8381543
[2025-11-20 22:41:41] 2025-11-20 21:40:38,251 | INFO     | mean y: 2859444.261707989
[2025-11-20 22:41:41] 2025-11-20 21:40:38,252 | INFO     | intersect: -6236759519.1571865
[2025-11-20 22:41:41] 2025-11-20 21:40:38,253 | INFO     | chi2: 10.48400817439766
[2025-11-20 22:41:41] 2025-11-20 21:40:38,253 | INFO     | current chi2=10.48400817439766 (change=23.430598528229467 %)
[2025-11-20 22:41:41] 2025-11-20 21:40:38,254 | INFO     | right removable region: 1451
[2025-11-20 22:41:41] 2025-11-20 21:40:38,256 | INFO     | sum of square deviations: 949243001096.9655
[2025-11-20 22:41:41] 2025-11-20 21:40:38,310 | INFO     | sum of deviations: 2414357279892.1484
[2025-11-20 22:41:41] 2025-11-20 21:40:38,311 | INFO     | mean x: 1763630559.8381543
[2025-11-20 22:41:41] 2025-11-20 21:40:38,311 | INFO     | mean y: 2859096.0984848486
[2025-11-20 22:41:41] 2025-11-20 21:40:38,311 | INFO     | intersect: -4482856654.520522
[2025-11-20 22:41:41] 2025-11-20 21:40:38,313 | INFO     | chi2: 11.080764982297504
[2025-11-20 22:41:41] 2025-11-20 21:40:38,313 | INFO     | current chi2=11.080764982297504 (change=19.072216615033312 %)
[2025-11-20 22:41:41] 2025-11-20 21:40:38,313 | INFO     | left removable region: 10
[2025-11-20 22:41:41] 2025-11-20 21:40:38,315 | INFO     | sum of square deviations: 927832752723.8958
[2025-11-20 22:41:41] 2025-11-20 21:40:38,365 | INFO     | time since job start (88899s) is within the limit (172800.0s)
[2025-11-20 22:41:41] 2025-11-20 21:40:38,374 | INFO     | sum of deviations: 2859812100322.83
[2025-11-20 22:41:41] 2025-11-20 21:40:38,375 | INFO     | mean x: 1763630529.3455935
[2025-11-20 22:41:41] 2025-11-20 21:40:38,375 | INFO     | mean y: 2870454.6509368494
[2025-11-20 22:41:41] 2025-11-20 21:40:38,375 | INFO     | intersect: -5433078980.755742
[2025-11-20 22:41:41] 2025-11-20 21:40:38,377 | INFO     | chi2: 6.912098119492716
[2025-11-20 22:41:41] 2025-11-20 21:40:38,377 | INFO     | current memory leak: 3.08 B/s (using 1441 data points, chi2=6.91)
[2025-11-20 22:41:41] 2025-11-20 21:40:38,379 | INFO     | could have reported an average CPU frequency of 1999 MHz (49 samples)
[2025-11-20 22:41:41] 2025-11-20 21:40:38,380 | INFO     | ..............................
[2025-11-20 22:41:41] 2025-11-20 21:40:38,380 | INFO     | . Timing measurements:
[2025-11-20 22:41:41] 2025-11-20 21:40:38,380 | INFO     | . get job = 0 s
[2025-11-20 22:41:41] 2025-11-20 21:40:38,380 | INFO     | . initial setup = 3 s
[2025-11-20 22:41:41] 2025-11-20 21:40:38,380 | INFO     | . payload setup = 13 s
[2025-11-20 22:41:41] 2025-11-20 21:40:38,380 | INFO     | . stage-in = 0 s
[2025-11-20 22:41:41] 2025-11-20 21:40:38,380 | INFO     | . payload execution = 88839 s
[2025-11-20 22:41:41] 2025-11-20 21:40:38,380 | INFO     | . stage-out = 3 s
[2025-11-20 22:41:41] 2025-11-20 21:40:38,380 | INFO     | . log creation = 1 s
[2025-11-20 22:41:41] 2025-11-20 21:40:38,380 | INFO     | ..............................
[2025-11-20 22:41:41] 2025-11-20 21:40:38,502 | INFO     | 
[2025-11-20 22:41:41] 2025-11-20 21:40:38,502 | INFO     | job summary report
[2025-11-20 22:41:41] 2025-11-20 21:40:38,502 | INFO     | --------------------------------------------------
[2025-11-20 22:41:41] 2025-11-20 21:40:38,502 | INFO     | PanDA job id: 6891582181
[2025-11-20 22:41:41] 2025-11-20 21:40:38,502 | INFO     | task id: 47493068
[2025-11-20 22:41:41] 2025-11-20 21:40:38,502 | INFO     | errors: (none)
[2025-11-20 22:41:41] 2025-11-20 21:40:38,502 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-20 22:41:41] 2025-11-20 21:40:38,503 | INFO     | pilot state: finished 
[2025-11-20 22:41:41] 2025-11-20 21:40:38,503 | INFO     | transexitcode: 0
[2025-11-20 22:41:41] 2025-11-20 21:40:38,503 | INFO     | exeerrorcode: 0
[2025-11-20 22:41:41] 2025-11-20 21:40:38,503 | INFO     | exeerrordiag: 
[2025-11-20 22:41:41] 2025-11-20 21:40:38,503 | INFO     | exitcode: 0
[2025-11-20 22:41:41] 2025-11-20 21:40:38,503 | INFO     | exitmsg: OK
[2025-11-20 22:41:41] 2025-11-20 21:40:38,503 | INFO     | cpuconsumptiontime: 331990 s
[2025-11-20 22:41:41] 2025-11-20 21:40:38,503 | INFO     | nevents: 1000
[2025-11-20 22:41:41] 2025-11-20 21:40:38,503 | INFO     | neventsw: 0
[2025-11-20 22:41:41] 2025-11-20 21:40:38,503 | INFO     | pid: 32489
[2025-11-20 22:41:41] 2025-11-20 21:40:38,503 | INFO     | pgrp: 32489
[2025-11-20 22:41:41] 2025-11-20 21:40:38,504 | INFO     | corecount: 8
[2025-11-20 22:41:41] 2025-11-20 21:40:38,504 | INFO     | event service: False
[2025-11-20 22:41:41] 2025-11-20 21:40:38,504 | INFO     | sizes: {0: 2296372, 1: 2297228, 2: 2297228, 12: 2297518, 13: 2297546, 88857: 2359556, 88858: 2359683, 88861: 2370357, 88864: 2370413, 88877: 2370659}
[2025-11-20 22:41:41] 2025-11-20 21:40:38,504 | INFO     | --------------------------------------------------
[2025-11-20 22:41:41] 2025-11-20 21:40:38,504 | INFO     | 
[2025-11-20 22:41:41] 2025-11-20 21:40:38,504 | INFO     | executing command: ls -lF /var/lib/boinc/slots/7
[2025-11-20 22:41:41] 2025-11-20 21:40:38,551 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-20 22:41:41] 2025-11-20 21:40:38,551 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-20 22:41:41] 2025-11-20 21:40:38,551 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-20 22:41:41] 2025-11-20 21:40:38,552 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-20 22:41:41] 2025-11-20 21:40:38,552 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-20 22:41:41] 2025-11-20 21:40:38,552 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-20 22:41:41] 2025-11-20 21:40:38,552 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-20 22:41:41] 2025-11-20 21:40:38,552 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-20 22:41:41] 2025-11-20 21:40:38,552 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-20 22:41:41] 2025-11-20 21:40:38,552 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-20 22:41:41] 2025-11-20 21:40:38,552 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-20 22:41:41] 2025-11-20 21:40:38,552 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-20 22:41:41] 2025-11-20 21:40:38,552 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-20 22:41:41] 2025-11-20 21:40:38,553 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-20 22:41:41] 2025-11-20 21:40:38,553 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-20 22:41:41] 2025-11-20 21:40:38,553 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-20 22:41:41] 2025-11-20 21:40:38,553 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-20 22:41:41] 2025-11-20 21:40:38,553 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-20 22:41:41] 2025-11-20 21:40:38,553 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-20 22:41:41] 2025-11-20 21:40:38,553 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-20 22:41:41] 2025-11-20 21:40:38,553 | INFO     | job 6891582181 has completed (purged errors)
[2025-11-20 22:41:41] 2025-11-20 21:40:38,553 | INFO     | overall cleanup function is called
[2025-11-20 22:41:41] 2025-11-20 21:40:39,567 | INFO     | --- collectZombieJob: --- 10, [32489]
[2025-11-20 22:41:41] 2025-11-20 21:40:39,567 | INFO     | zombie collector waiting for pid 32489
[2025-11-20 22:41:41] 2025-11-20 21:40:39,567 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-20 22:41:41] 2025-11-20 21:40:39,568 | INFO     | collected zombie processes
[2025-11-20 22:41:41] 2025-11-20 21:40:39,568 | INFO     | will attempt to kill all subprocesses of pid=32489
[2025-11-20 22:41:41] 2025-11-20 21:40:39,668 | INFO     | process IDs to be killed: [32489] (in reverse order)
[2025-11-20 22:41:41] 2025-11-20 21:40:39,744 | WARNING  | found no corresponding commands to process id(s)
[2025-11-20 22:41:41] 2025-11-20 21:40:39,744 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-20 22:41:41] 2025-11-20 21:40:39,747 | INFO     | did not find any defunct processes belonging to 32489
[2025-11-20 22:41:41] 2025-11-20 21:40:39,751 | INFO     | did not find any defunct processes belonging to 32489
[2025-11-20 22:41:41] 2025-11-20 21:40:39,754 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-20 22:41:41] 2025-11-20 21:40:39,754 | INFO     | ready for new job
[2025-11-20 22:41:41] 2025-11-20 21:40:39,754 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-20 22:41:41] 2025-11-20 21:40:39,762 | INFO     | ***************************************
[2025-11-20 22:41:41] 2025-11-20 21:40:39,762 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-20 22:41:41] 2025-11-20 21:40:39,762 | INFO     | ***************************************
[2025-11-20 22:41:41] 2025-11-20 21:40:39,762 | INFO     | 
[2025-11-20 22:41:41] 2025-11-20 21:40:39,763 | INFO     | pilot is running in a VM
[2025-11-20 22:41:41] 2025-11-20 21:40:39,763 | INFO     | architecture information:
[2025-11-20 22:41:41] 2025-11-20 21:40:39,764 | INFO     | executing command: cat /etc/os-release
[2025-11-20 22:41:41] 2025-11-20 21:40:39,794 | INFO     | cat /etc/os-release:
[2025-11-20 22:41:41] NAME="CentOS Linux"
[2025-11-20 22:41:41] VERSION="7 (Core)"
[2025-11-20 22:41:41] ID="centos"
[2025-11-20 22:41:41] ID_LIKE="rhel fedora"
[2025-11-20 22:41:41] VERSION_ID="7"
[2025-11-20 22:41:41] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-20 22:41:41] ANSI_COLOR="0;31"
[2025-11-20 22:41:41] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-20 22:41:41] HOME_URL="https://www.centos.org/"
[2025-11-20 22:41:41] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-20 22:41:41] 
[2025-11-20 22:41:41] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-20 22:41:41] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-20 22:41:41] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-20 22:41:41] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-20 22:41:41] 
[2025-11-20 22:41:41] 2025-11-20 21:40:39,794 | INFO     | ***************************************
[2025-11-20 22:41:41] 2025-11-20 21:40:40,296 | INFO     | executing command: df -mP /var/lib/boinc/slots/7
[2025-11-20 22:41:41] 2025-11-20 21:40:40,380 | INFO     | sufficient remaining disk space (493867761664 B)
[2025-11-20 22:41:41] 2025-11-20 21:40:40,380 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-20 22:41:41] 2025-11-20 21:40:40,380 | INFO     | current server update state: UPDATING_FINAL
[2025-11-20 22:41:41] 2025-11-20 21:40:40,380 | INFO     | update_server=False
[2025-11-20 22:41:41] 2025-11-20 21:40:40,380 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-20 22:41:41] 2025-11-20 21:40:40,381 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-20 22:41:41] 2025-11-20 21:40:40,381 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-20 22:41:41] 2025-11-20 21:40:40,381 | INFO     | aborting loop
[2025-11-20 22:41:41] 2025-11-20 21:40:40,662 | INFO     | all job control threads have been joined
[2025-11-20 22:41:41] 2025-11-20 21:40:40,790 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-20 22:41:41] 2025-11-20 21:40:40,852 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-20 22:41:41] 2025-11-20 21:40:41,006 | INFO     | all payload control threads have been joined
[2025-11-20 22:41:41] 2025-11-20 21:40:41,373 | INFO     | all data control threads have been joined
[2025-11-20 22:41:41] 2025-11-20 21:40:41,386 | INFO     | [job] retrieve thread has finished
[2025-11-20 22:41:41] 2025-11-20 21:40:41,386 | INFO     | [job] queue monitor thread has finished
[2025-11-20 22:41:41] 2025-11-20 21:40:41,387 | INFO     | [job] job monitor thread has finished
[2025-11-20 22:41:41] 2025-11-20 21:40:41,516 | INFO     | [job] create_data_payload thread has finished
[2025-11-20 22:41:41] 2025-11-20 21:40:41,668 | INFO     | [job] control thread has finished
[2025-11-20 22:41:41] 2025-11-20 21:40:41,726 | INFO     | [job] validate thread has finished
[2025-11-20 22:41:41] 2025-11-20 21:40:41,850 | INFO     | [data] copytool_in thread has finished
[2025-11-20 22:41:41] 2025-11-20 21:40:41,875 | INFO     | [payload] validate_pre thread has finished
[2025-11-20 22:41:41] 2025-11-20 21:40:42,011 | INFO     | [payload] control thread has finished
[2025-11-20 22:41:41] 2025-11-20 21:40:42,376 | INFO     | [data] control thread has finished
[2025-11-20 22:41:41] 2025-11-20 21:40:42,534 | INFO     | [payload] failed_post thread has finished
[2025-11-20 22:41:41] 2025-11-20 21:40:42,537 | INFO     | [payload] execute_payloads thread has finished
[2025-11-20 22:41:41] 2025-11-20 21:40:42,574 | INFO     | [payload] validate_post thread has finished
[2025-11-20 22:41:41] 2025-11-20 21:40:42,859 | INFO     | [data] copytool_out thread has finished
[2025-11-20 22:41:41] 2025-11-20 21:40:44,797 | INFO     | [data] queue_monitor thread has finished
[2025-11-20 22:41:41] 2025-11-20 21:40:51,225 | INFO     | job.realtimelogging is not enabled
[2025-11-20 22:41:41] 2025-11-20 21:40:52,231 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-20 22:41:41] 2025-11-20 21:41:11,543 | INFO     | PID=25907 has CPU usage=2.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-20 22:41:41] 2025-11-20 21:41:11,543 | INFO     | .. there are 9 such processes running
[2025-11-20 22:41:41] 2025-11-20 21:41:11,543 | INFO     | found 0 job(s) in 20 queues
[2025-11-20 22:41:41] 2025-11-20 21:41:11,543 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-20 22:41:41] 2025-11-20 21:41:11,543 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-20 22:41:41] 2025-11-20 21:41:34,590 | INFO     | [monitor] cgroup control has ended
[2025-11-20 22:41:41] 2025-11-20 21:41:35,614 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140529055078208)>', '<ExcThread(monitor, started 140528603604736)>']
[2025-11-20 22:41:41] 2025-11-20 21:41:35,665 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-20 22:41:41] 2025-11-20 21:41:35,665 | INFO     | [monitor] control thread has ended
[2025-11-20 22:41:41] 2025-11-20 21:41:40,638 | INFO     | all workflow threads have been joined
[2025-11-20 22:41:41] 2025-11-20 21:41:40,638 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-20 22:41:41] 2025-11-20 21:41:40,638 | INFO     | traces error code: 0
[2025-11-20 22:41:41] 2025-11-20 21:41:40,639 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-20 22:41:41] 2025-11-20 21:41:40,929 [wrapper] ==== pilot stdout END ====
[2025-11-20 22:41:41] 2025-11-20 21:41:40,936 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-20 22:41:41] 2025-11-20 21:41:40,939 [wrapper] pilotpid: 25907
[2025-11-20 22:41:41] 2025-11-20 21:41:40,942 [wrapper] Pilot exit status: 0
[2025-11-20 22:41:41] 2025-11-20 21:41:40,984 [wrapper] pandaids: 6891582181
[2025-11-20 22:41:41] 2025-11-20 21:41:41,045 [wrapper] cleanup supervisor_pilot 32725 25908
[2025-11-20 22:41:41] 2025-11-20 21:41:41,067 [wrapper] Test setup, not cleaning
[2025-11-20 22:41:41] 2025-11-20 21:41:41,071 [wrapper] apfmon messages muted
[2025-11-20 22:41:41] 2025-11-20 21:41:41,075 [wrapper] ==== wrapper stdout END ====
[2025-11-20 22:41:41] 2025-11-20 21:41:41,080 [wrapper] ==== wrapper stderr END ====
[2025-11-20 22:41:41]  *** Error codes and diagnostics ***
[2025-11-20 22:41:41]     "exeErrorCode": 0,
[2025-11-20 22:41:41]     "exeErrorDiag": "",
[2025-11-20 22:41:41]     "pilotErrorCode": 0,
[2025-11-20 22:41:41]     "pilotErrorDiag": "",
[2025-11-20 22:41:41]  *** Listing of results directory ***
[2025-11-20 22:41:41] total 1314712
[2025-11-20 22:41:41] -rw-r--r--. 1 boinc boinc    576529 Nov 18 17:45 pilot3.tar.gz
[2025-11-20 22:41:41] -rw-r--r--. 1 boinc boinc      5112 Nov 18 18:02 queuedata.json
[2025-11-20 22:41:41] -rwx------. 1 boinc boinc     36292 Nov 18 18:02 runpilot2-wrapper.sh
[2025-11-20 22:41:41] -rw-r--r--. 1 boinc boinc       100 Nov 19 21:55 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-20 22:41:41] -rwxr-xr-x. 1 boinc boinc      7986 Nov 19 21:55 run_atlas
[2025-11-20 22:41:41] -rw-r--r--. 1 boinc boinc       105 Nov 19 21:55 job.xml
[2025-11-20 22:41:41] -rw-r--r--. 2 boinc boinc 407688999 Nov 19 21:55 EVNT.47493065._000421.pool.root.1
[2025-11-20 22:41:41] -rw-r--r--. 2 boinc boinc     15120 Nov 19 21:55 start_atlas.sh
[2025-11-20 22:41:41] drwxrwx--x. 2 boinc boinc        68 Nov 19 21:55 shared
[2025-11-20 22:41:41] -rw-r--r--. 2 boinc boinc    590100 Nov 19 21:55 input.tar.gz
[2025-11-20 22:41:41] -rw-r--r--. 1 boinc boinc      6388 Nov 19 21:55 init_data.xml
[2025-11-20 22:41:41] -rw-r--r--. 1 boinc boinc         0 Nov 19 21:55 boinc_lockfile
[2025-11-20 22:41:41] -rw-r--r--. 1 boinc boinc      2773 Nov 19 21:55 pandaJob.out
[2025-11-20 22:41:41] -rw-------. 1 boinc boinc    989443 Nov 19 21:58 agis_schedconf.cvmfs.json
[2025-11-20 22:41:41] drwx------. 5 boinc boinc      4096 Nov 19 21:59 pilot3
[2025-11-20 22:41:41] -rw-r--r--. 1 boinc boinc       533 Nov 20 22:20 boinc_task_state.xml
[2025-11-20 22:41:41] -rw-------. 1 boinc boinc 905974633 Nov 20 22:39 HITS.47493068._004203.pool.root.1
[2025-11-20 22:41:41] -rw-------. 1 boinc boinc      1034 Nov 20 22:40 memory_monitor_summary.json
[2025-11-20 22:41:41] -rw-------. 1 boinc boinc   1526164 Nov 20 22:40 agis_ddmendpoints.agis.ALL.json
[2025-11-20 22:41:41] -rw-------. 1 boinc boinc   2528825 Nov 20 22:40 log.47493068._004203.job.log.tgz.1
[2025-11-20 22:41:41] -rw-------. 1 boinc boinc        95 Nov 20 22:40 pilot_heartbeat.json
[2025-11-20 22:41:41] -rw-------. 1 boinc boinc      7940 Nov 20 22:40 heartbeat.json
[2025-11-20 22:41:41] -rw-r--r--. 1 boinc boinc      8192 Nov 20 22:41 boinc_mmap_file
[2025-11-20 22:41:41] -rw-r--r--. 1 boinc boinc        29 Nov 20 22:41 wrapper_checkpoint.txt
[2025-11-20 22:41:41] -rw-------. 1 boinc boinc      4956 Nov 20 22:41 pilotlog.txt
[2025-11-20 22:41:41] -rw-------. 1 boinc boinc  11816625 Nov 20 22:41 log.47493068._004203.job.log.1
[2025-11-20 22:41:41] -rw-------. 1 boinc boinc       353 Nov 20 22:41 output.list
[2025-11-20 22:41:41] -rw-r--r--. 1 boinc boinc       620 Nov 20 22:41 runtime_log
[2025-11-20 22:41:41] -rw-------. 1 boinc boinc  14366720 Nov 20 22:41 result.tar.gz
[2025-11-20 22:41:41] -rw-r--r--. 1 boinc boinc      8703 Nov 20 22:41 runtime_log.err
[2025-11-20 22:41:41] -rw-------. 1 boinc boinc       662 Nov 20 22:41 E90LDm7Gef8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmSWFKDmfSAFun.diag
[2025-11-20 22:41:41] -rw-r--r--. 1 boinc boinc     21457 Nov 20 22:41 stderr.txt
[2025-11-20 22:41:41] HITS file was successfully produced:
[2025-11-20 22:41:41] -rw-------. 1 boinc boinc 905974633 Nov 20 22:39 shared/HITS.pool.root.1
[2025-11-20 22:41:41]  *** Contents of shared directory: ***
[2025-11-20 22:41:41] total 1297508
[2025-11-20 22:41:41] -rw-r--r--. 2 boinc boinc 407688999 Nov 19 21:55 ATLAS.root_0
[2025-11-20 22:41:41] -rw-r--r--. 2 boinc boinc     15120 Nov 19 21:55 start_atlas.sh
[2025-11-20 22:41:41] -rw-r--r--. 2 boinc boinc    590100 Nov 19 21:55 input.tar.gz
[2025-11-20 22:41:41] -rw-------. 1 boinc boinc 905974633 Nov 20 22:39 HITS.pool.root.1
[2025-11-20 22:41:41] -rw-------. 1 boinc boinc  14366720 Nov 20 22:41 result.tar.gz
22:41:42 (22127): run_atlas exited; CPU time 332471.885716
22:41:42 (22127): called boinc_finish(0)

</stderr_txt>
]]>

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