Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
21:39:03 (1063): wrapper (7.7.26015): starting
21:39:03 (1063): wrapper: running run_atlas (--nthreads 8)
[2025-11-20 21:39:03] Arguments: --nthreads 8
[2025-11-20 21:39:03] Threads: 8
[2025-11-20 21:39:03] Checking for CVMFS
[2025-11-20 21:39:04] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-20 21:39:04] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-20 21:39:04] Running cvmfs_config stat atlas.cern.ch
[2025-11-20 21:39:05] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-20 21:39:05] 2.11.2.0 22894 73417 114908 153088 0 307 18103909 25165825 4202 130560 2 20745616 99.830 14049119 1996 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-20 21:39:05] CVMFS is ok
[2025-11-20 21:39:05] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-20 21:39:05] Checking for apptainer binary...
[2025-11-20 21:39:05] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-20 21:39:05] Running /usr/bin/apptainer --version
[2025-11-20 21:39:05] apptainer version 1.3.2-1.el7
[2025-11-20 21:39:05] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-20 21:39:09] cg-vwn425.simple-grid.lan
[2025-11-20 21:39:09] apptainer works
[2025-11-20 21:39:09] Set ATHENA_PROC_NUMBER=8
[2025-11-20 21:39:09] Set ATHENA_CORE_NUMBER=8
[2025-11-20 21:39:10] Starting ATLAS job with PandaID=6891579607
[2025-11-20 21:39:10] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/18 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-21 22:23:10]  *** The last 200 lines of the pilot log: ***
[2025-11-21 22:23:10] 2025-11-21 21:22:00,559 | INFO     | sum of square deviations: 953168748128.7277
[2025-11-21 22:23:10] 2025-11-21 21:22:00,686 | INFO     | sum of deviations: 3157601156701.9644
[2025-11-21 22:23:10] 2025-11-21 21:22:00,687 | INFO     | mean x: 1763715752.6905088
[2025-11-21 22:23:10] 2025-11-21 21:22:00,687 | INFO     | mean y: 2879586.3376891334
[2025-11-21 22:23:10] 2025-11-21 21:22:00,687 | INFO     | intersect: -5839853834.918905
[2025-11-21 22:23:10] 2025-11-21 21:22:00,689 | INFO     | chi2: 7.168896025365082
[2025-11-21 22:23:10] 2025-11-21 21:22:00,691 | INFO     | sum of square deviations: 943369771409.1189
[2025-11-21 22:23:10] 2025-11-21 21:22:00,751 | INFO     | sum of deviations: 3653244006946.2905
[2025-11-21 22:23:10] 2025-11-21 21:22:00,752 | INFO     | mean x: 1763715600.194617
[2025-11-21 22:23:10] 2025-11-21 21:22:00,752 | INFO     | mean y: 2887299.420979986
[2025-11-21 22:23:10] 2025-11-21 21:22:00,752 | INFO     | intersect: -6827184684.700665
[2025-11-21 22:23:10] 2025-11-21 21:22:00,754 | INFO     | chi2: 3.9836938882067354
[2025-11-21 22:23:10] 2025-11-21 21:22:00,754 | INFO     | current chi2=3.9836938882067354 (change=44.430859729146896 %)
[2025-11-21 22:23:10] 2025-11-21 21:22:00,756 | INFO     | sum of square deviations: 933638191301.9597
[2025-11-21 22:23:10] 2025-11-21 21:22:00,820 | INFO     | sum of deviations: 3877004995350.9805
[2025-11-21 22:23:10] 2025-11-21 21:22:00,821 | INFO     | mean x: 1763715447.6987534
[2025-11-21 22:23:10] 2025-11-21 21:22:00,821 | INFO     | mean y: 2890801.7700831024
[2025-11-21 22:23:10] 2025-11-21 21:22:00,821 | INFO     | intersect: -7321074375.329463
[2025-11-21 22:23:10] 2025-11-21 21:22:00,823 | INFO     | chi2: 2.9811657395925977
[2025-11-21 22:23:10] 2025-11-21 21:22:00,823 | INFO     | current chi2=2.9811657395925977 (change=25.16579277293384 %)
[2025-11-21 22:23:10] 2025-11-21 21:22:00,826 | INFO     | sum of square deviations: 923973246869.1584
[2025-11-21 22:23:10] 2025-11-21 21:22:00,883 | INFO     | sum of deviations: 3872721278328.3833
[2025-11-21 22:23:10] 2025-11-21 21:22:00,883 | INFO     | mean x: 1763715295.198749
[2025-11-21 22:23:10] 2025-11-21 21:22:00,884 | INFO     | mean y: 2890733.3238359974
[2025-11-21 22:23:10] 2025-11-21 21:22:00,884 | INFO     | intersect: -7389507018.206143
[2025-11-21 22:23:10] 2025-11-21 21:22:00,886 | INFO     | chi2: 2.9576513090878995
[2025-11-21 22:23:10] 2025-11-21 21:22:00,886 | INFO     | current chi2=2.9576513090878995 (change=0.7887662934135155 %)
[2025-11-21 22:23:10] 2025-11-21 21:22:00,886 | INFO     | right removable region: 1438
[2025-11-21 22:23:10] 2025-11-21 21:22:00,888 | INFO     | sum of square deviations: 943368715499.1176
[2025-11-21 22:23:10] 2025-11-21 21:22:00,949 | INFO     | sum of deviations: 2698663206079.344
[2025-11-21 22:23:10] 2025-11-21 21:22:00,949 | INFO     | mean x: 1763715905.194617
[2025-11-21 22:23:10] 2025-11-21 21:22:00,949 | INFO     | mean y: 2886724.3781918567
[2025-11-21 22:23:10] 2025-11-21 21:22:00,950 | INFO     | intersect: -5042516139.980511
[2025-11-21 22:23:10] 2025-11-21 21:22:00,951 | INFO     | chi2: 4.486279607929615
[2025-11-21 22:23:10] 2025-11-21 21:22:00,952 | INFO     | current chi2=4.486279607929615 (change=37.420216556967745 %)
[2025-11-21 22:23:10] 2025-11-21 21:22:00,954 | INFO     | sum of square deviations: 933636609822.3174
[2025-11-21 22:23:10] 2025-11-21 21:22:01,012 | INFO     | sum of deviations: 2593836486125.825
[2025-11-21 22:23:10] 2025-11-21 21:22:01,013 | INFO     | mean x: 1763716057.6945984
[2025-11-21 22:23:10] 2025-11-21 21:22:01,013 | INFO     | mean y: 2888366.7977839336
[2025-11-21 22:23:10] 2025-11-21 21:22:01,013 | INFO     | intersect: -4897081293.223249
[2025-11-21 22:23:10] 2025-11-21 21:22:01,015 | INFO     | chi2: 4.412658578873639
[2025-11-21 22:23:10] 2025-11-21 21:22:01,016 | INFO     | current chi2=4.412658578873639 (change=1.6410263177945597 %)
[2025-11-21 22:23:10] 2025-11-21 21:22:01,016 | INFO     | left removable region: 20
[2025-11-21 22:23:10] 2025-11-21 21:22:01,018 | INFO     | sum of square deviations: 884108327417.621
[2025-11-21 22:23:10] 2025-11-21 21:22:01,031 | INFO     | monitor loop #5895: job 0:6891579607 is in state 'finished'
[2025-11-21 22:23:10] 2025-11-21 21:22:01,031 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-21 22:23:10] 2025-11-21 21:22:01,083 | INFO     | sum of deviations: 3156685934655.356
[2025-11-21 22:23:10] 2025-11-21 21:22:01,084 | INFO     | mean x: 1763715874.700282
[2025-11-21 22:23:10] 2025-11-21 21:22:01,084 | INFO     | mean y: 2902000.1114245416
[2025-11-21 22:23:10] 2025-11-21 21:22:01,084 | INFO     | intersect: -6294399950.042997
[2025-11-21 22:23:10] 2025-11-21 21:22:01,086 | INFO     | chi2: 0.13251871849139793
[2025-11-21 22:23:10] 2025-11-21 21:22:01,086 | INFO     | current memory leak: 3.57 B/s (using 1418 data points, chi2=0.13)
[2025-11-21 22:23:10] 2025-11-21 21:22:01,088 | INFO     | could have reported an average CPU frequency of 1999 MHz (49 samples)
[2025-11-21 22:23:10] 2025-11-21 21:22:01,089 | INFO     | ..............................
[2025-11-21 22:23:10] 2025-11-21 21:22:01,089 | INFO     | . Timing measurements:
[2025-11-21 22:23:10] 2025-11-21 21:22:01,089 | INFO     | . get job = 0 s
[2025-11-21 22:23:10] 2025-11-21 21:22:01,089 | INFO     | . initial setup = 5 s
[2025-11-21 22:23:10] 2025-11-21 21:22:01,089 | INFO     | . payload setup = 12 s
[2025-11-21 22:23:10] 2025-11-21 21:22:01,089 | INFO     | . stage-in = 0 s
[2025-11-21 22:23:10] 2025-11-21 21:22:01,089 | INFO     | . payload execution = 88677 s
[2025-11-21 22:23:10] 2025-11-21 21:22:01,089 | INFO     | . stage-out = 7 s
[2025-11-21 22:23:10] 2025-11-21 21:22:01,089 | INFO     | . log creation = 1 s
[2025-11-21 22:23:10] 2025-11-21 21:22:01,089 | INFO     | ..............................
[2025-11-21 22:23:10] 2025-11-21 21:22:01,504 | INFO     | 
[2025-11-21 22:23:10] 2025-11-21 21:22:01,504 | INFO     | job summary report
[2025-11-21 22:23:10] 2025-11-21 21:22:01,505 | INFO     | --------------------------------------------------
[2025-11-21 22:23:10] 2025-11-21 21:22:01,505 | INFO     | PanDA job id: 6891579607
[2025-11-21 22:23:10] 2025-11-21 21:22:01,505 | INFO     | task id: 47493068
[2025-11-21 22:23:10] 2025-11-21 21:22:01,505 | INFO     | errors: (none)
[2025-11-21 22:23:10] 2025-11-21 21:22:01,505 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-21 22:23:10] 2025-11-21 21:22:01,505 | INFO     | pilot state: finished 
[2025-11-21 22:23:10] 2025-11-21 21:22:01,505 | INFO     | transexitcode: 0
[2025-11-21 22:23:10] 2025-11-21 21:22:01,505 | INFO     | exeerrorcode: 0
[2025-11-21 22:23:10] 2025-11-21 21:22:01,505 | INFO     | exeerrordiag: 
[2025-11-21 22:23:10] 2025-11-21 21:22:01,506 | INFO     | exitcode: 0
[2025-11-21 22:23:10] 2025-11-21 21:22:01,506 | INFO     | exitmsg: OK
[2025-11-21 22:23:10] 2025-11-21 21:22:01,506 | INFO     | cpuconsumptiontime: 336344 s
[2025-11-21 22:23:10] 2025-11-21 21:22:01,506 | INFO     | nevents: 1000
[2025-11-21 22:23:10] 2025-11-21 21:22:01,506 | INFO     | neventsw: 0
[2025-11-21 22:23:10] 2025-11-21 21:22:01,506 | INFO     | pid: 11418
[2025-11-21 22:23:10] 2025-11-21 21:22:01,506 | INFO     | pgrp: 11418
[2025-11-21 22:23:10] 2025-11-21 21:22:01,506 | INFO     | corecount: 8
[2025-11-21 22:23:10] 2025-11-21 21:22:01,506 | INFO     | event service: False
[2025-11-21 22:23:10] 2025-11-21 21:22:01,506 | INFO     | sizes: {0: 2298626, 1: 2298825, 12: 2298825, 23: 2298853, 33: 2299143, 34: 2299143, 44: 2299327, 88694: 2362609, 88702: 2371605, 88705: 2371661, 88721: 2371907}
[2025-11-21 22:23:10] 2025-11-21 21:22:01,506 | INFO     | --------------------------------------------------
[2025-11-21 22:23:10] 2025-11-21 21:22:01,507 | INFO     | 
[2025-11-21 22:23:10] 2025-11-21 21:22:01,507 | INFO     | executing command: ls -lF /var/lib/boinc/slots/18
[2025-11-21 22:23:10] 2025-11-21 21:22:01,554 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-21 22:23:10] 2025-11-21 21:22:01,554 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-21 22:23:10] 2025-11-21 21:22:01,555 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-21 22:23:10] 2025-11-21 21:22:01,555 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-21 22:23:10] 2025-11-21 21:22:01,555 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-21 22:23:10] 2025-11-21 21:22:01,555 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-21 22:23:10] 2025-11-21 21:22:01,555 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-21 22:23:10] 2025-11-21 21:22:01,555 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-21 22:23:10] 2025-11-21 21:22:01,555 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-21 22:23:10] 2025-11-21 21:22:01,555 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-21 22:23:10] 2025-11-21 21:22:01,556 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-21 22:23:10] 2025-11-21 21:22:01,556 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-21 22:23:10] 2025-11-21 21:22:01,556 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-21 22:23:10] 2025-11-21 21:22:01,556 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-21 22:23:10] 2025-11-21 21:22:01,556 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-21 22:23:10] 2025-11-21 21:22:01,556 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-21 22:23:10] 2025-11-21 21:22:01,556 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-21 22:23:10] 2025-11-21 21:22:01,557 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-21 22:23:10] 2025-11-21 21:22:01,557 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-21 22:23:10] 2025-11-21 21:22:01,557 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-21 22:23:10] 2025-11-21 21:22:01,557 | INFO     | job 6891579607 has completed (purged errors)
[2025-11-21 22:23:10] 2025-11-21 21:22:01,558 | INFO     | overall cleanup function is called
[2025-11-21 22:23:10] 2025-11-21 21:22:02,578 | INFO     | --- collectZombieJob: --- 10, [11418]
[2025-11-21 22:23:10] 2025-11-21 21:22:02,578 | INFO     | zombie collector waiting for pid 11418
[2025-11-21 22:23:10] 2025-11-21 21:22:02,578 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-21 22:23:10] 2025-11-21 21:22:02,579 | INFO     | collected zombie processes
[2025-11-21 22:23:10] 2025-11-21 21:22:02,579 | INFO     | will attempt to kill all subprocesses of pid=11418
[2025-11-21 22:23:10] 2025-11-21 21:22:02,713 | INFO     | process IDs to be killed: [11418] (in reverse order)
[2025-11-21 22:23:10] 2025-11-21 21:22:02,852 | WARNING  | found no corresponding commands to process id(s)
[2025-11-21 22:23:10] 2025-11-21 21:22:02,853 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-21 22:23:10] 2025-11-21 21:22:02,856 | INFO     | did not find any defunct processes belonging to 11418
[2025-11-21 22:23:10] 2025-11-21 21:22:02,859 | INFO     | did not find any defunct processes belonging to 11418
[2025-11-21 22:23:10] 2025-11-21 21:22:02,868 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-21 22:23:10] 2025-11-21 21:22:02,869 | INFO     | ready for new job
[2025-11-21 22:23:10] 2025-11-21 21:22:02,869 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-21 22:23:10] 2025-11-21 21:22:02,879 | INFO     | ***************************************
[2025-11-21 22:23:10] 2025-11-21 21:22:02,884 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-21 22:23:10] 2025-11-21 21:22:02,884 | INFO     | ***************************************
[2025-11-21 22:23:10] 2025-11-21 21:22:02,884 | INFO     | 
[2025-11-21 22:23:10] 2025-11-21 21:22:02,885 | INFO     | pilot is running in a VM
[2025-11-21 22:23:10] 2025-11-21 21:22:02,885 | INFO     | architecture information:
[2025-11-21 22:23:10] 2025-11-21 21:22:02,893 | INFO     | executing command: cat /etc/os-release
[2025-11-21 22:23:10] 2025-11-21 21:22:02,930 | INFO     | cat /etc/os-release:
[2025-11-21 22:23:10] NAME="CentOS Linux"
[2025-11-21 22:23:10] VERSION="7 (Core)"
[2025-11-21 22:23:10] ID="centos"
[2025-11-21 22:23:10] ID_LIKE="rhel fedora"
[2025-11-21 22:23:10] VERSION_ID="7"
[2025-11-21 22:23:10] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-21 22:23:10] ANSI_COLOR="0;31"
[2025-11-21 22:23:10] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-21 22:23:10] HOME_URL="https://www.centos.org/"
[2025-11-21 22:23:10] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-21 22:23:10] 
[2025-11-21 22:23:10] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-21 22:23:10] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-21 22:23:10] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-21 22:23:10] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-21 22:23:10] 
[2025-11-21 22:23:10] 2025-11-21 21:22:02,930 | INFO     | ***************************************
[2025-11-21 22:23:10] 2025-11-21 21:22:03,435 | INFO     | executing command: df -mP /var/lib/boinc/slots/18
[2025-11-21 22:23:10] 2025-11-21 21:22:03,619 | INFO     | sufficient remaining disk space (494849228800 B)
[2025-11-21 22:23:10] 2025-11-21 21:22:03,619 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-21 22:23:10] 2025-11-21 21:22:03,620 | INFO     | current server update state: UPDATING_FINAL
[2025-11-21 22:23:10] 2025-11-21 21:22:03,620 | INFO     | update_server=False
[2025-11-21 22:23:10] 2025-11-21 21:22:03,620 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-21 22:23:10] 2025-11-21 21:22:03,621 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-21 22:23:10] 2025-11-21 21:22:03,662 | INFO     | all job control threads have been joined
[2025-11-21 22:23:10] 2025-11-21 21:22:04,102 | INFO     | all payload control threads have been joined
[2025-11-21 22:23:10] 2025-11-21 21:22:04,453 | INFO     | all data control threads have been joined
[2025-11-21 22:23:10] 2025-11-21 21:22:04,546 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-21 22:23:10] 2025-11-21 21:22:04,546 | INFO     | aborting loop
[2025-11-21 22:23:10] 2025-11-21 21:22:04,625 | INFO     | [job] retrieve thread has finished
[2025-11-21 22:23:10] 2025-11-21 21:22:04,668 | INFO     | [job] control thread has finished
[2025-11-21 22:23:10] 2025-11-21 21:22:04,765 | INFO     | [payload] validate_pre thread has finished
[2025-11-21 22:23:10] 2025-11-21 21:22:04,791 | INFO     | [job] validate thread has finished
[2025-11-21 22:23:10] 2025-11-21 21:22:05,107 | INFO     | [payload] control thread has finished
[2025-11-21 22:23:10] 2025-11-21 21:22:05,241 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-21 22:23:10] 2025-11-21 21:22:05,250 | INFO     | [payload] execute_payloads thread has finished
[2025-11-21 22:23:10] 2025-11-21 21:22:05,267 | INFO     | [data] copytool_in thread has finished
[2025-11-21 22:23:10] 2025-11-21 21:22:05,271 | INFO     | [job] create_data_payload thread has finished
[2025-11-21 22:23:10] 2025-11-21 21:22:05,459 | INFO     | [data] control thread has finished
[2025-11-21 22:23:10] 2025-11-21 21:22:05,551 | INFO     | [job] job monitor thread has finished
[2025-11-21 22:23:10] 2025-11-21 21:22:05,627 | INFO     | [data] copytool_out thread has finished
[2025-11-21 22:23:10] 2025-11-21 21:22:05,834 | INFO     | [payload] validate_post thread has finished
[2025-11-21 22:23:10] 2025-11-21 21:22:05,987 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-21 22:23:10] 2025-11-21 21:22:06,086 | INFO     | [payload] failed_post thread has finished
[2025-11-21 22:23:10] 2025-11-21 21:22:06,239 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-21 22:23:10] 2025-11-21 21:22:07,245 | INFO     | [job] queue monitor thread has finished
[2025-11-21 22:23:10] 2025-11-21 21:22:09,250 | INFO     | [data] queue_monitor thread has finished
[2025-11-21 22:23:10] 2025-11-21 21:22:33,063 | INFO     | PID=4871 has CPU usage=2.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-11-21 22:23:10] 2025-11-21 21:22:33,064 | INFO     | .. there are 9 such processes running
[2025-11-21 22:23:10] 2025-11-21 21:22:33,065 | INFO     | found 0 job(s) in 20 queues
[2025-11-21 22:23:10] 2025-11-21 21:22:33,065 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-21 22:23:10] 2025-11-21 21:22:33,065 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-21 22:23:10] 2025-11-21 21:23:03,585 | INFO     | [monitor] cgroup control has ended
[2025-11-21 22:23:10] 2025-11-21 21:23:04,729 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140230852015936)>', '<ExcThread(monitor, started 140230111770368)>']
[2025-11-21 22:23:10] 2025-11-21 21:23:05,231 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-21 22:23:10] 2025-11-21 21:23:05,231 | INFO     | [monitor] control thread has ended
[2025-11-21 22:23:10] 2025-11-21 21:23:09,748 | INFO     | all workflow threads have been joined
[2025-11-21 22:23:10] 2025-11-21 21:23:09,748 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-21 22:23:10] 2025-11-21 21:23:09,749 | INFO     | traces error code: 0
[2025-11-21 22:23:10] 2025-11-21 21:23:09,749 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-21 22:23:10] 2025-11-21 21:23:09,998 [wrapper] ==== pilot stdout END ====
[2025-11-21 22:23:10] 2025-11-21 21:23:10,006 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-21 22:23:10] 2025-11-21 21:23:10,010 [wrapper] pilotpid: 4871
[2025-11-21 22:23:10] 2025-11-21 21:23:10,013 [wrapper] Pilot exit status: 0
[2025-11-21 22:23:10] 2025-11-21 21:23:10,042 [wrapper] pandaids: 6891579607
[2025-11-21 22:23:10] 2025-11-21 21:23:10,089 [wrapper] cleanup supervisor_pilot 16193 4872
[2025-11-21 22:23:10] 2025-11-21 21:23:10,106 [wrapper] Test setup, not cleaning
[2025-11-21 22:23:10] 2025-11-21 21:23:10,110 [wrapper] apfmon messages muted
[2025-11-21 22:23:10] 2025-11-21 21:23:10,113 [wrapper] ==== wrapper stdout END ====
[2025-11-21 22:23:10] 2025-11-21 21:23:10,119 [wrapper] ==== wrapper stderr END ====
[2025-11-21 22:23:10]  *** Error codes and diagnostics ***
[2025-11-21 22:23:10]     "exeErrorCode": 0,
[2025-11-21 22:23:10]     "exeErrorDiag": "",
[2025-11-21 22:23:10]     "pilotErrorCode": 0,
[2025-11-21 22:23:10]     "pilotErrorDiag": "",
[2025-11-21 22:23:10]  *** Listing of results directory ***
[2025-11-21 22:23:10] total 1317792
[2025-11-21 22:23:10] -rw-r--r--. 1 boinc boinc    576529 Nov 18 17:45 pilot3.tar.gz
[2025-11-21 22:23:10] -rw-r--r--. 1 boinc boinc      5112 Nov 18 17:56 queuedata.json
[2025-11-21 22:23:10] -rwx------. 1 boinc boinc     36292 Nov 18 17:56 runpilot2-wrapper.sh
[2025-11-21 22:23:10] -rw-r--r--. 1 boinc boinc       100 Nov 20 21:39 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-21 22:23:10] -rwxr-xr-x. 1 boinc boinc      7986 Nov 20 21:39 run_atlas
[2025-11-21 22:23:10] -rw-r--r--. 1 boinc boinc       105 Nov 20 21:39 job.xml
[2025-11-21 22:23:10] -rw-r--r--. 2 boinc boinc 410263902 Nov 20 21:39 EVNT.47493065._000406.pool.root.1
[2025-11-21 22:23:10] -rw-r--r--. 1 boinc boinc      6392 Nov 20 21:39 init_data.xml
[2025-11-21 22:23:10] -rw-r--r--. 2 boinc boinc     15120 Nov 20 21:39 start_atlas.sh
[2025-11-21 22:23:10] drwxrwx--x. 2 boinc boinc        68 Nov 20 21:39 shared
[2025-11-21 22:23:10] -rw-r--r--. 2 boinc boinc    590102 Nov 20 21:39 input.tar.gz
[2025-11-21 22:23:10] -rw-r--r--. 1 boinc boinc         0 Nov 20 21:39 boinc_lockfile
[2025-11-21 22:23:10] -rw-r--r--. 1 boinc boinc      2773 Nov 20 21:39 pandaJob.out
[2025-11-21 22:23:10] -rw-------. 1 boinc boinc    989440 Nov 20 21:42 agis_schedconf.cvmfs.json
[2025-11-21 22:23:10] drwx------. 5 boinc boinc      4096 Nov 20 21:42 pilot3
[2025-11-21 22:23:10] -rw-r--r--. 1 boinc boinc       533 Nov 21 22:09 boinc_task_state.xml
[2025-11-21 22:23:10] -rw-------. 1 boinc boinc 906562244 Nov 21 22:20 HITS.47493068._004056.pool.root.1
[2025-11-21 22:23:10] -rw-------. 1 boinc boinc      1035 Nov 21 22:21 memory_monitor_summary.json
[2025-11-21 22:23:10] -rw-------. 1 boinc boinc   1526164 Nov 21 22:21 agis_ddmendpoints.agis.ALL.json
[2025-11-21 22:23:10] -rw-------. 1 boinc boinc   2527722 Nov 21 22:21 log.47493068._004056.job.log.tgz.1
[2025-11-21 22:23:10] -rw-------. 1 boinc boinc      8623 Nov 21 22:22 heartbeat.json
[2025-11-21 22:23:10] -rw-------. 1 boinc boinc        95 Nov 21 22:22 pilot_heartbeat.json
[2025-11-21 22:23:10] -rw-r--r--. 1 boinc boinc      8192 Nov 21 22:22 boinc_mmap_file
[2025-11-21 22:23:10] -rw-r--r--. 1 boinc boinc        29 Nov 21 22:22 wrapper_checkpoint.txt
[2025-11-21 22:23:10] -rw-------. 1 boinc boinc      4884 Nov 21 22:23 pilotlog.txt
[2025-11-21 22:23:10] -rw-------. 1 boinc boinc  11813395 Nov 21 22:23 log.47493068._004056.job.log.1
[2025-11-21 22:23:10] -rw-------. 1 boinc boinc       353 Nov 21 22:23 output.list
[2025-11-21 22:23:10] -rw-r--r--. 1 boinc boinc       620 Nov 21 22:23 runtime_log
[2025-11-21 22:23:10] -rw-------. 1 boinc boinc  14356480 Nov 21 22:23 result.tar.gz
[2025-11-21 22:23:10] -rw-r--r--. 1 boinc boinc      8717 Nov 21 22:23 runtime_log.err
[2025-11-21 22:23:10] -rw-------. 1 boinc boinc       662 Nov 21 22:23 4UjMDm5Aef8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmIwFKDm6YPUKn.diag
[2025-11-21 22:23:10] -rw-r--r--. 1 boinc boinc     20897 Nov 21 22:23 stderr.txt
[2025-11-21 22:23:10] HITS file was successfully produced:
[2025-11-21 22:23:10] -rw-------. 1 boinc boinc 906562244 Nov 21 22:20 shared/HITS.pool.root.1
[2025-11-21 22:23:10]  *** Contents of shared directory: ***
[2025-11-21 22:23:10] total 1300584
[2025-11-21 22:23:10] -rw-r--r--. 2 boinc boinc 410263902 Nov 20 21:39 ATLAS.root_0
[2025-11-21 22:23:10] -rw-r--r--. 2 boinc boinc     15120 Nov 20 21:39 start_atlas.sh
[2025-11-21 22:23:10] -rw-r--r--. 2 boinc boinc    590102 Nov 20 21:39 input.tar.gz
[2025-11-21 22:23:10] -rw-------. 1 boinc boinc 906562244 Nov 21 22:20 HITS.pool.root.1
[2025-11-21 22:23:10] -rw-------. 1 boinc boinc  14356480 Nov 21 22:23 result.tar.gz
22:23:11 (1063): run_atlas exited; CPU time 336928.086308
22:23:11 (1063): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN