Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
21:35:49 (2895): wrapper (7.7.26015): starting
21:35:49 (2895): wrapper: running run_atlas (--nthreads 8)
[2025-11-21 21:35:49] Arguments: --nthreads 8
[2025-11-21 21:35:49] Threads: 8
[2025-11-21 21:35:49] Checking for CVMFS
[2025-11-21 21:35:49] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-21 21:35:50] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-21 21:35:50] Running cvmfs_config stat atlas.cern.ch
[2025-11-21 21:35:51] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-21 21:35:51] 2.11.2.0 6428 278484 143408 153142 2 236 20936384 25165825 4581 130560 3 138746228 99.875 83271420 3253 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-21 21:35:51] CVMFS is ok
[2025-11-21 21:35:51] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-21 21:35:51] Checking for apptainer binary...
[2025-11-21 21:35:51] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-21 21:35:51] Running /usr/bin/apptainer --version
[2025-11-21 21:35:51] apptainer version 1.3.2-1.el7
[2025-11-21 21:35:51] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-21 21:36:01] cg-vwn335.simple-grid.lan
[2025-11-21 21:36:01] apptainer works
[2025-11-21 21:36:01] Set ATHENA_PROC_NUMBER=8
[2025-11-21 21:36:01] Set ATHENA_CORE_NUMBER=8
[2025-11-21 21:36:01] Starting ATLAS job with PandaID=6891579620
[2025-11-21 21:36:01] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/7 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-22 23:55:34]  *** The last 200 lines of the pilot log: ***
[2025-11-22 23:55:34] 2025-11-22 22:54:39,370 | INFO     | time since job start (94498s) is within the limit (172800.0s)
[2025-11-22 23:55:34] 2025-11-22 22:54:41,022 | INFO     | monitor loop #6302: job 0:6891579620 is in state 'finished'
[2025-11-22 23:55:34] 2025-11-22 22:54:41,023 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-22 23:55:34] 2025-11-22 22:54:41,377 | INFO     | time since job start (94500s) is within the limit (172800.0s)
[2025-11-22 23:55:34] 2025-11-22 22:54:43,390 | INFO     | time since job start (94502s) is within the limit (172800.0s)
[2025-11-22 23:55:34] 2025-11-22 22:54:43,531 | INFO     | monitor loop #6303: job 0:6891579620 is in state 'finished'
[2025-11-22 23:55:34] 2025-11-22 22:54:43,532 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-22 23:55:34] 2025-11-22 22:54:45,396 | INFO     | time since job start (94504s) is within the limit (172800.0s)
[2025-11-22 23:55:34] 2025-11-22 22:54:46,036 | INFO     | monitor loop #6304: job 0:6891579620 is in state 'finished'
[2025-11-22 23:55:34] 2025-11-22 22:54:46,037 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-22 23:55:34] 2025-11-22 22:54:47,404 | INFO     | time since job start (94506s) is within the limit (172800.0s)
[2025-11-22 23:55:34] 2025-11-22 22:54:48,546 | INFO     | monitor loop #6305: job 0:6891579620 is in state 'finished'
[2025-11-22 23:55:34] 2025-11-22 22:54:48,547 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-22 23:55:34] 2025-11-22 22:54:48,958 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-22 23:55:34] 2025-11-22 22:54:48,960 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-11-22 23:55:34] 2025-11-22 22:54:48,962 | INFO     | using path: /var/lib/boinc/slots/7/PanDA_Pilot-6891579620/memory_monitor_summary.json (trf name=prmon)
[2025-11-22 23:55:34] 2025-11-22 22:54:48,963 | INFO     | extracted standard info from prmon json
[2025-11-22 23:55:34] 2025-11-22 22:54:48,963 | INFO     | extracted standard memory fields from prmon json
[2025-11-22 23:55:34] 2025-11-22 22:54:48,963 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-22 23:55:34] 2025-11-22 22:54:49,027 | INFO     | fitting pss+swap vs Time
[2025-11-22 23:55:34] 2025-11-22 22:54:49,041 | INFO     | sum of square deviations: 1141351857969.8538
[2025-11-22 23:55:34] 2025-11-22 22:54:49,115 | INFO     | sum of deviations: 2228770161802.724
[2025-11-22 23:55:34] 2025-11-22 22:54:49,115 | INFO     | mean x: 1763804856.759715
[2025-11-22 23:55:34] 2025-11-22 22:54:49,116 | INFO     | mean y: 2852575.934585492
[2025-11-22 23:55:34] 2025-11-22 22:54:49,116 | INFO     | intersect: -3441410127.576616
[2025-11-22 23:55:34] 2025-11-22 22:54:49,118 | INFO     | chi2: 20.1045977914844
[2025-11-22 23:55:34] 2025-11-22 22:54:49,120 | INFO     | sum of square deviations: 1130300039306.893
[2025-11-22 23:55:34] 2025-11-22 22:54:49,199 | INFO     | sum of deviations: 2735300954927.525
[2025-11-22 23:55:34] 2025-11-22 22:54:49,199 | INFO     | mean x: 1763804704.2638078
[2025-11-22 23:55:34] 2025-11-22 22:54:49,199 | INFO     | mean y: 2859564.4223521766
[2025-11-22 23:55:34] 2025-11-22 22:54:49,200 | INFO     | intersect: -4265508589.2555766
[2025-11-22 23:55:34] 2025-11-22 22:54:49,201 | INFO     | chi2: 16.874209175155674
[2025-11-22 23:55:34] 2025-11-22 22:54:49,202 | INFO     | current chi2=16.874209175155674 (change=16.06790968828537 %)
[2025-11-22 23:55:34] 2025-11-22 22:54:49,202 | INFO     | right removable region: 1538
[2025-11-22 23:55:34] 2025-11-22 22:54:49,204 | INFO     | sum of square deviations: 1130298852856.892
[2025-11-22 23:55:34] 2025-11-22 22:54:49,276 | INFO     | sum of deviations: 1761739390226.4822
[2025-11-22 23:55:34] 2025-11-22 22:54:49,276 | INFO     | mean x: 1763805009.2638078
[2025-11-22 23:55:34] 2025-11-22 22:54:49,276 | INFO     | mean y: 2859017.048083171
[2025-11-22 23:55:34] 2025-11-22 22:54:49,276 | INFO     | intersect: -2746294230.02883
[2025-11-22 23:55:34] 2025-11-22 22:54:49,278 | INFO     | chi2: 17.7026742994229
[2025-11-22 23:55:34] 2025-11-22 22:54:49,279 | INFO     | current chi2=17.7026742994229 (change=11.947135262158156 %)
[2025-11-22 23:55:34] 2025-11-22 22:54:49,279 | INFO     | left removable region: 10
[2025-11-22 23:55:34] 2025-11-22 22:54:49,281 | INFO     | sum of square deviations: 1106235869977.449
[2025-11-22 23:55:34] 2025-11-22 22:54:49,349 | INFO     | sum of deviations: 2269631129386.2476
[2025-11-22 23:55:34] 2025-11-22 22:54:49,350 | INFO     | mean x: 1763804978.768979
[2025-11-22 23:55:34] 2025-11-22 22:54:49,350 | INFO     | mean y: 2869135.051701571
[2025-11-22 23:55:34] 2025-11-22 22:54:49,350 | INFO     | intersect: -3615876915.9709716
[2025-11-22 23:55:34] 2025-11-22 22:54:49,352 | INFO     | chi2: 13.634010084356325
[2025-11-22 23:55:34] 2025-11-22 22:54:49,352 | INFO     | current memory leak: 2.05 B/s (using 1528 data points, chi2=13.63)
[2025-11-22 23:55:34] 2025-11-22 22:54:49,355 | INFO     | could have reported an average CPU frequency of 1999 MHz (52 samples)
[2025-11-22 23:55:34] 2025-11-22 22:54:49,355 | INFO     | ..............................
[2025-11-22 23:55:34] 2025-11-22 22:54:49,355 | INFO     | . Timing measurements:
[2025-11-22 23:55:34] 2025-11-22 22:54:49,355 | INFO     | . get job = 0 s
[2025-11-22 23:55:34] 2025-11-22 22:54:49,356 | INFO     | . initial setup = 10 s
[2025-11-22 23:55:34] 2025-11-22 22:54:49,356 | INFO     | . payload setup = 15 s
[2025-11-22 23:55:34] 2025-11-22 22:54:49,356 | INFO     | . stage-in = 0 s
[2025-11-22 23:55:34] 2025-11-22 22:54:49,356 | INFO     | . payload execution = 94196 s
[2025-11-22 23:55:34] 2025-11-22 22:54:49,356 | INFO     | . stage-out = 8 s
[2025-11-22 23:55:34] 2025-11-22 22:54:49,356 | INFO     | . log creation = 2 s
[2025-11-22 23:55:34] 2025-11-22 22:54:49,356 | INFO     | ..............................
[2025-11-22 23:55:34] 2025-11-22 22:54:49,423 | INFO     | time since job start (94508s) is within the limit (172800.0s)
[2025-11-22 23:55:34] 2025-11-22 22:54:49,483 | INFO     | 
[2025-11-22 23:55:34] 2025-11-22 22:54:49,484 | INFO     | job summary report
[2025-11-22 23:55:34] 2025-11-22 22:54:49,484 | INFO     | --------------------------------------------------
[2025-11-22 23:55:34] 2025-11-22 22:54:49,484 | INFO     | PanDA job id: 6891579620
[2025-11-22 23:55:34] 2025-11-22 22:54:49,484 | INFO     | task id: 47493068
[2025-11-22 23:55:34] 2025-11-22 22:54:49,484 | INFO     | errors: (none)
[2025-11-22 23:55:34] 2025-11-22 22:54:49,484 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-22 23:55:34] 2025-11-22 22:54:49,484 | INFO     | pilot state: finished 
[2025-11-22 23:55:34] 2025-11-22 22:54:49,484 | INFO     | transexitcode: 0
[2025-11-22 23:55:34] 2025-11-22 22:54:49,484 | INFO     | exeerrorcode: 0
[2025-11-22 23:55:34] 2025-11-22 22:54:49,484 | INFO     | exeerrordiag: 
[2025-11-22 23:55:34] 2025-11-22 22:54:49,484 | INFO     | exitcode: 0
[2025-11-22 23:55:34] 2025-11-22 22:54:49,485 | INFO     | exitmsg: OK
[2025-11-22 23:55:34] 2025-11-22 22:54:49,485 | INFO     | cpuconsumptiontime: 350649 s
[2025-11-22 23:55:34] 2025-11-22 22:54:49,485 | INFO     | nevents: 1000
[2025-11-22 23:55:34] 2025-11-22 22:54:49,485 | INFO     | neventsw: 0
[2025-11-22 23:55:34] 2025-11-22 22:54:49,485 | INFO     | pid: 13360
[2025-11-22 23:55:34] 2025-11-22 22:54:49,485 | INFO     | pgrp: 13360
[2025-11-22 23:55:34] 2025-11-22 22:54:49,485 | INFO     | corecount: 8
[2025-11-22 23:55:34] 2025-11-22 22:54:49,485 | INFO     | event service: False
[2025-11-22 23:55:34] 2025-11-22 22:54:49,485 | INFO     | sizes: {0: 2298625, 1: 2298824, 12: 2298824, 23: 2298852, 33: 2298880, 44: 2298936, 55: 2299092, 66: 2299120, 76: 2299148, 87: 2299204, 97: 2299494, 98: 2299802, 9
[2025-11-22 23:55:34] 2025-11-22 22:54:49,485 | INFO     | --------------------------------------------------
[2025-11-22 23:55:34] 2025-11-22 22:54:49,485 | INFO     | 
[2025-11-22 23:55:34] 2025-11-22 22:54:49,486 | INFO     | executing command: ls -lF /var/lib/boinc/slots/7
[2025-11-22 23:55:34] 2025-11-22 22:54:49,992 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-22 23:55:34] 2025-11-22 22:54:49,992 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-22 23:55:34] 2025-11-22 22:54:49,992 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-22 23:55:34] 2025-11-22 22:54:49,992 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-22 23:55:34] 2025-11-22 22:54:49,992 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-22 23:55:34] 2025-11-22 22:54:49,992 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-22 23:55:34] 2025-11-22 22:54:49,992 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-22 23:55:34] 2025-11-22 22:54:49,992 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-22 23:55:34] 2025-11-22 22:54:49,993 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-22 23:55:34] 2025-11-22 22:54:49,993 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-22 23:55:34] 2025-11-22 22:54:49,993 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-22 23:55:34] 2025-11-22 22:54:49,993 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-22 23:55:34] 2025-11-22 22:54:49,993 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-22 23:55:34] 2025-11-22 22:54:49,993 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-22 23:55:34] 2025-11-22 22:54:49,993 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-22 23:55:34] 2025-11-22 22:54:49,993 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-22 23:55:34] 2025-11-22 22:54:49,993 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-22 23:55:34] 2025-11-22 22:54:49,993 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-22 23:55:34] 2025-11-22 22:54:49,994 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-22 23:55:34] 2025-11-22 22:54:49,994 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-22 23:55:34] 2025-11-22 22:54:49,994 | INFO     | job 6891579620 has completed (purged errors)
[2025-11-22 23:55:34] 2025-11-22 22:54:49,994 | INFO     | overall cleanup function is called
[2025-11-22 23:55:34] 2025-11-22 22:54:51,019 | INFO     | --- collectZombieJob: --- 10, [13360]
[2025-11-22 23:55:34] 2025-11-22 22:54:51,020 | INFO     | zombie collector waiting for pid 13360
[2025-11-22 23:55:34] 2025-11-22 22:54:51,020 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-22 23:55:34] 2025-11-22 22:54:51,020 | INFO     | collected zombie processes
[2025-11-22 23:55:34] 2025-11-22 22:54:51,020 | INFO     | will attempt to kill all subprocesses of pid=13360
[2025-11-22 23:55:34] 2025-11-22 22:54:51,144 | INFO     | process IDs to be killed: [13360] (in reverse order)
[2025-11-22 23:55:34] 2025-11-22 22:54:52,017 | WARNING  | found no corresponding commands to process id(s)
[2025-11-22 23:55:34] 2025-11-22 22:54:52,018 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-22 23:55:34] 2025-11-22 22:54:52,021 | INFO     | did not find any defunct processes belonging to 13360
[2025-11-22 23:55:34] 2025-11-22 22:54:52,025 | INFO     | did not find any defunct processes belonging to 13360
[2025-11-22 23:55:34] 2025-11-22 22:54:52,104 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-22 23:55:34] 2025-11-22 22:54:52,104 | INFO     | ready for new job
[2025-11-22 23:55:34] 2025-11-22 22:54:52,104 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-22 23:55:34] 2025-11-22 22:54:52,111 | INFO     | ***************************************
[2025-11-22 23:55:34] 2025-11-22 22:54:52,111 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-22 23:55:34] 2025-11-22 22:54:52,112 | INFO     | ***************************************
[2025-11-22 23:55:34] 2025-11-22 22:54:52,112 | INFO     | 
[2025-11-22 23:55:34] 2025-11-22 22:54:52,112 | INFO     | pilot is running in a VM
[2025-11-22 23:55:34] 2025-11-22 22:54:52,112 | INFO     | architecture information:
[2025-11-22 23:55:34] 2025-11-22 22:54:52,122 | INFO     | executing command: cat /etc/os-release
[2025-11-22 23:55:34] 2025-11-22 22:54:52,385 | INFO     | cat /etc/os-release:
[2025-11-22 23:55:34] NAME="CentOS Linux"
[2025-11-22 23:55:34] VERSION="7 (Core)"
[2025-11-22 23:55:34] ID="centos"
[2025-11-22 23:55:34] ID_LIKE="rhel fedora"
[2025-11-22 23:55:34] VERSION_ID="7"
[2025-11-22 23:55:34] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-22 23:55:34] ANSI_COLOR="0;31"
[2025-11-22 23:55:34] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-22 23:55:34] HOME_URL="https://www.centos.org/"
[2025-11-22 23:55:34] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-22 23:55:34] 
[2025-11-22 23:55:34] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-22 23:55:34] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-22 23:55:34] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-22 23:55:34] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-22 23:55:34] 
[2025-11-22 23:55:34] 2025-11-22 22:54:52,386 | INFO     | ***************************************
[2025-11-22 23:55:34] 2025-11-22 22:54:52,890 | INFO     | executing command: df -mP /var/lib/boinc/slots/7
[2025-11-22 23:55:34] 2025-11-22 22:54:53,114 | INFO     | sufficient remaining disk space (495070478336 B)
[2025-11-22 23:55:34] 2025-11-22 22:54:53,115 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-22 23:55:34] 2025-11-22 22:54:53,115 | INFO     | current server update state: UPDATING_FINAL
[2025-11-22 23:55:34] 2025-11-22 22:54:53,115 | INFO     | update_server=False
[2025-11-22 23:55:34] 2025-11-22 22:54:53,115 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-22 23:55:34] 2025-11-22 22:54:53,115 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-22 23:55:34] 2025-11-22 22:54:53,116 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-22 23:55:34] 2025-11-22 22:54:53,120 | INFO     | all payload control threads have been joined
[2025-11-22 23:55:34] 2025-11-22 22:54:53,574 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-22 23:55:34] 2025-11-22 22:54:53,575 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-22 23:55:34] 2025-11-22 22:54:53,575 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-22 23:55:34] 2025-11-22 22:54:53,575 | INFO     | will abort loop
[2025-11-22 23:55:34] 2025-11-22 22:54:53,596 | INFO     | all job control threads have been joined
[2025-11-22 23:55:34] 2025-11-22 22:54:53,784 | INFO     | all data control threads have been joined
[2025-11-22 23:55:34] 2025-11-22 22:54:54,122 | INFO     | [job] retrieve thread has finished
[2025-11-22 23:55:34] 2025-11-22 22:54:54,127 | INFO     | [payload] control thread has finished
[2025-11-22 23:55:34] 2025-11-22 22:54:54,306 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-22 23:55:34] 2025-11-22 22:54:54,360 | INFO     | [data] copytool_in thread has finished
[2025-11-22 23:55:34] 2025-11-22 22:54:54,386 | INFO     | [payload] execute_payloads thread has finished
[2025-11-22 23:55:34] 2025-11-22 22:54:54,496 | INFO     | [payload] validate_post thread has finished
[2025-11-22 23:55:34] 2025-11-22 22:54:54,497 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-22 23:55:34] 2025-11-22 22:54:54,580 | INFO     | [payload] validate_pre thread has finished
[2025-11-22 23:55:34] 2025-11-22 22:54:54,582 | INFO     | [job] job monitor thread has finished
[2025-11-22 23:55:34] 2025-11-22 22:54:54,601 | INFO     | [job] control thread has finished
[2025-11-22 23:55:34] 2025-11-22 22:54:54,676 | INFO     | [payload] failed_post thread has finished
[2025-11-22 23:55:34] 2025-11-22 22:54:54,790 | INFO     | [data] control thread has finished
[2025-11-22 23:55:34] 2025-11-22 22:54:54,834 | INFO     | [job] validate thread has finished
[2025-11-22 23:55:34] 2025-11-22 22:54:55,022 | INFO     | [job] create_data_payload thread has finished
[2025-11-22 23:55:34] 2025-11-22 22:54:55,123 | INFO     | [data] copytool_out thread has finished
[2025-11-22 23:55:34] 2025-11-22 22:54:55,503 | INFO     | [job] queue monitor thread has finished
[2025-11-22 23:55:34] 2025-11-22 22:54:57,127 | INFO     | [data] queue_monitor thread has finished
[2025-11-22 23:55:34] 2025-11-22 22:55:22,593 | INFO     | PID=6668 has CPU usage=1.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-11-22 23:55:34] 2025-11-22 22:55:22,594 | INFO     | .. there are 9 such processes running
[2025-11-22 23:55:34] 2025-11-22 22:55:22,595 | INFO     | found 0 job(s) in 20 queues
[2025-11-22 23:55:34] 2025-11-22 22:55:22,595 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-22 23:55:34] 2025-11-22 22:55:22,595 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-22 23:55:34] 2025-11-22 22:55:25,884 | INFO     | [monitor] cgroup control has ended
[2025-11-22 23:55:34] 2025-11-22 22:55:26,999 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139845463070528)>', '<ExcThread(monitor, started 139845158541056)>']
[2025-11-22 23:55:34] 2025-11-22 22:55:27,624 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-22 23:55:34] 2025-11-22 22:55:27,625 | INFO     | [monitor] control thread has ended
[2025-11-22 23:55:34] 2025-11-22 22:55:32,024 | INFO     | all workflow threads have been joined
[2025-11-22 23:55:34] 2025-11-22 22:55:32,025 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-22 23:55:34] 2025-11-22 22:55:32,025 | INFO     | traces error code: 0
[2025-11-22 23:55:34] 2025-11-22 22:55:32,025 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-22 23:55:34] 2025-11-22 22:55:32,476 [wrapper] ==== pilot stdout END ====
[2025-11-22 23:55:34] 2025-11-22 22:55:32,575 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-22 23:55:34] 2025-11-22 22:55:32,622 [wrapper] pilotpid: 6668
[2025-11-22 23:55:34] 2025-11-22 22:55:32,710 [wrapper] Pilot exit status: 0
[2025-11-22 23:55:34] 2025-11-22 22:55:33,086 [wrapper] pandaids: 6891579620
[2025-11-22 23:55:34] 2025-11-22 22:55:33,798 [wrapper] cleanup supervisor_pilot 26464 6669
[2025-11-22 23:55:34] 2025-11-22 22:55:33,869 [wrapper] Test setup, not cleaning
[2025-11-22 23:55:34] 2025-11-22 22:55:33,971 [wrapper] apfmon messages muted
[2025-11-22 23:55:34] 2025-11-22 22:55:34,066 [wrapper] ==== wrapper stdout END ====
[2025-11-22 23:55:34] 2025-11-22 22:55:34,169 [wrapper] ==== wrapper stderr END ====
[2025-11-22 23:55:34]  *** Error codes and diagnostics ***
[2025-11-22 23:55:34]     "exeErrorCode": 0,
[2025-11-22 23:55:34]     "exeErrorDiag": "",
[2025-11-22 23:55:34]     "pilotErrorCode": 0,
[2025-11-22 23:55:34]     "pilotErrorDiag": "",
[2025-11-22 23:55:34]  *** Listing of results directory ***
[2025-11-22 23:55:34] total 1347496
[2025-11-22 23:55:34] -rw-r--r--. 1 boinc boinc    576529 Nov 18 17:45 pilot3.tar.gz
[2025-11-22 23:55:34] -rw-r--r--. 1 boinc boinc      5112 Nov 18 17:56 queuedata.json
[2025-11-22 23:55:34] -rwx------. 1 boinc boinc     36292 Nov 18 17:56 runpilot2-wrapper.sh
[2025-11-22 23:55:34] -rw-r--r--. 1 boinc boinc       100 Nov 21 21:35 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-22 23:55:34] -rwxr-xr-x. 1 boinc boinc      7986 Nov 21 21:35 run_atlas
[2025-11-22 23:55:34] -rw-r--r--. 1 boinc boinc       105 Nov 21 21:35 job.xml
[2025-11-22 23:55:34] -rw-r--r--. 2 boinc boinc 410756533 Nov 21 21:35 EVNT.47493065._000407.pool.root.1
[2025-11-22 23:55:34] -rw-r--r--. 2 boinc boinc     15120 Nov 21 21:35 start_atlas.sh
[2025-11-22 23:55:34] drwxrwx--x. 2 boinc boinc        68 Nov 21 21:35 shared
[2025-11-22 23:55:34] -rw-r--r--. 2 boinc boinc    590101 Nov 21 21:35 input.tar.gz
[2025-11-22 23:55:34] -rw-r--r--. 1 boinc boinc      6390 Nov 21 21:35 init_data.xml
[2025-11-22 23:55:34] -rw-r--r--. 1 boinc boinc         0 Nov 21 21:35 boinc_lockfile
[2025-11-22 23:55:34] -rw-r--r--. 1 boinc boinc      2773 Nov 21 21:36 pandaJob.out
[2025-11-22 23:55:34] -rw-------. 1 boinc boinc    989798 Nov 21 21:39 agis_schedconf.cvmfs.json
[2025-11-22 23:55:34] drwx------. 5 boinc boinc      4096 Nov 21 21:39 pilot3
[2025-11-22 23:55:34] -rw-r--r--. 1 boinc boinc       533 Nov 22 23:21 boinc_task_state.xml
[2025-11-22 23:55:34] -rw-------. 1 boinc boinc 934939215 Nov 22 23:51 HITS.47493068._004069.pool.root.1
[2025-11-22 23:55:34] -rw-------. 1 boinc boinc      1029 Nov 22 23:52 memory_monitor_summary.json
[2025-11-22 23:55:34] -rw-------. 1 boinc boinc   1526164 Nov 22 23:53 agis_ddmendpoints.agis.ALL.json
[2025-11-22 23:55:34] -rw-------. 1 boinc boinc   2585614 Nov 22 23:53 log.47493068._004069.job.log.tgz.1
[2025-11-22 23:55:34] -rw-------. 1 boinc boinc      8628 Nov 22 23:54 heartbeat.json
[2025-11-22 23:55:34] -rw-r--r--. 1 boinc boinc        29 Nov 22 23:55 wrapper_checkpoint.txt
[2025-11-22 23:55:34] -rw-r--r--. 1 boinc boinc      8192 Nov 22 23:55 boinc_mmap_file
[2025-11-22 23:55:34] -rw-------. 1 boinc boinc        95 Nov 22 23:55 pilot_heartbeat.json
[2025-11-22 23:55:34] -rw-------. 1 boinc boinc      5069 Nov 22 23:55 pilotlog.txt
[2025-11-22 23:55:34] -rw-------. 1 boinc boinc  12527971 Nov 22 23:55 log.47493068._004069.job.log.1
[2025-11-22 23:55:34] -rw-------. 1 boinc boinc       353 Nov 22 23:55 output.list
[2025-11-22 23:55:34] -rw-r--r--. 1 boinc boinc       620 Nov 22 23:55 runtime_log
[2025-11-22 23:55:34] -rw-------. 1 boinc boinc  15134720 Nov 22 23:55 result.tar.gz
[2025-11-22 23:55:34] -rw-r--r--. 1 boinc boinc      8703 Nov 22 23:55 runtime_log.err
[2025-11-22 23:55:34] -rw-------. 1 boinc boinc       662 Nov 22 23:55 00zMDm5Aef8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmUwFKDmOqxRRn.diag
[2025-11-22 23:55:34] -rw-r--r--. 1 boinc boinc     21405 Nov 22 23:55 stderr.txt
[2025-11-22 23:55:35] HITS file was successfully produced:
[2025-11-22 23:55:35] -rw-------. 1 boinc boinc 934939215 Nov 22 23:51 shared/HITS.pool.root.1
[2025-11-22 23:55:35]  *** Contents of shared directory: ***
[2025-11-22 23:55:35] total 1329536
[2025-11-22 23:55:35] -rw-r--r--. 2 boinc boinc 410756533 Nov 21 21:35 ATLAS.root_0
[2025-11-22 23:55:35] -rw-r--r--. 2 boinc boinc     15120 Nov 21 21:35 start_atlas.sh
[2025-11-22 23:55:35] -rw-r--r--. 2 boinc boinc    590101 Nov 21 21:35 input.tar.gz
[2025-11-22 23:55:35] -rw-------. 1 boinc boinc 934939215 Nov 22 23:51 HITS.pool.root.1
[2025-11-22 23:55:35] -rw-------. 1 boinc boinc  15134720 Nov 22 23:55 result.tar.gz
23:55:36 (2895): run_atlas exited; CPU time 351236.535688
23:55:36 (2895): called boinc_finish(0)

</stderr_txt>
]]>

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