Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
22:58:30 (1475): wrapper (7.7.26015): starting
22:58:30 (1475): wrapper: running run_atlas (--nthreads 8)
[2025-11-20 22:58:30] Arguments: --nthreads 8
[2025-11-20 22:58:30] Threads: 8
[2025-11-20 22:58:30] Checking for CVMFS
[2025-11-20 22:58:31] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-20 22:58:31] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-20 22:58:31] Running cvmfs_config stat atlas.cern.ch
[2025-11-20 22:58:31] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-20 22:58:31] 2.11.2.0 28641 277153 161588 153088 3 307 19435199 25165824 4099 130560 218 122797758 99.877 70913797 2760 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-20 22:58:31] CVMFS is ok
[2025-11-20 22:58:31] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-20 22:58:31] Checking for apptainer binary...
[2025-11-20 22:58:31] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-20 22:58:31] Running /usr/bin/apptainer --version
[2025-11-20 22:58:31] apptainer version 1.3.2-1.el7
[2025-11-20 22:58:31] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-20 22:58:34] cg-vwn402.simple-grid.lan
[2025-11-20 22:58:34] apptainer works
[2025-11-20 22:58:34] Set ATHENA_PROC_NUMBER=8
[2025-11-20 22:58:34] Set ATHENA_CORE_NUMBER=8
[2025-11-20 22:58:34] Starting ATLAS job with PandaID=6891568327
[2025-11-20 22:58:34] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/6 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-21 23:58:52]  *** The last 200 lines of the pilot log: ***
[2025-11-21 23:58:52] 2025-11-21 22:57:43,896 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-21 23:58:52] 2025-11-21 22:57:45,456 | INFO     | time since job start (89920s) is within the limit (172800.0s)
[2025-11-21 23:58:52] 2025-11-21 22:57:46,401 | INFO     | monitor loop #6004: job 0:6891568327 is in state 'finished'
[2025-11-21 23:58:52] 2025-11-21 22:57:46,401 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-21 23:58:52] 2025-11-21 22:57:47,470 | INFO     | time since job start (89922s) is within the limit (172800.0s)
[2025-11-21 23:58:52] 2025-11-21 22:57:48,909 | INFO     | monitor loop #6005: job 0:6891568327 is in state 'finished'
[2025-11-21 23:58:52] 2025-11-21 22:57:48,909 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-21 23:58:52] 2025-11-21 22:57:49,477 | INFO     | time since job start (89924s) is within the limit (172800.0s)
[2025-11-21 23:58:52] 2025-11-21 22:57:50,704 | INFO     | PID=5215 has CPU usage=1.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-11-21 23:58:52] 2025-11-21 22:57:50,704 | INFO     | .. there are 9 such processes running
[2025-11-21 23:58:52] 2025-11-21 22:57:51,414 | INFO     | monitor loop #6006: job 0:6891568327 is in state 'finished'
[2025-11-21 23:58:52] 2025-11-21 22:57:51,414 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-21 23:58:52] 2025-11-21 22:57:51,705 | INFO     | time since job start (89926s) is within the limit (172800.0s)
[2025-11-21 23:58:52] 2025-11-21 22:57:53,713 | INFO     | time since job start (89928s) is within the limit (172800.0s)
[2025-11-21 23:58:52] 2025-11-21 22:57:53,740 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-21 23:58:52] 2025-11-21 22:57:53,741 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-11-21 23:58:52] 2025-11-21 22:57:53,743 | INFO     | using path: /var/lib/boinc/slots/6/PanDA_Pilot-6891568327/memory_monitor_summary.json (trf name=prmon)
[2025-11-21 23:58:52] 2025-11-21 22:57:53,743 | INFO     | extracted standard info from prmon json
[2025-11-21 23:58:52] 2025-11-21 22:57:53,743 | INFO     | extracted standard memory fields from prmon json
[2025-11-21 23:58:52] 2025-11-21 22:57:53,743 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-21 23:58:52] 2025-11-21 22:57:53,778 | INFO     | fitting pss+swap vs Time
[2025-11-21 23:58:52] 2025-11-21 22:57:53,781 | INFO     | sum of square deviations: 989011144152.6086
[2025-11-21 23:58:52] 2025-11-21 22:57:53,857 | INFO     | sum of deviations: 2686723599619.1245
[2025-11-21 23:58:52] 2025-11-21 22:57:53,857 | INFO     | mean x: 1763720864.6086957
[2025-11-21 23:58:52] 2025-11-21 22:57:53,857 | INFO     | mean y: 2864336.5054347827
[2025-11-21 23:58:52] 2025-11-21 22:57:53,858 | INFO     | intersect: -4788416831.660693
[2025-11-21 23:58:52] 2025-11-21 22:57:53,860 | INFO     | chi2: 14.002156780784164
[2025-11-21 23:58:52] 2025-11-21 22:57:53,862 | INFO     | sum of square deviations: 978967583816.4437
[2025-11-21 23:58:52] 2025-11-21 22:57:53,920 | INFO     | sum of deviations: 3184000403370.11
[2025-11-21 23:58:52] 2025-11-21 22:57:53,921 | INFO     | mean x: 1763720712.1124744
[2025-11-21 23:58:52] 2025-11-21 22:57:53,921 | INFO     | mean y: 2871885.8902522153
[2025-11-21 23:58:52] 2025-11-21 22:57:53,921 | INFO     | intersect: -5733464589.017253
[2025-11-21 23:58:52] 2025-11-21 22:57:53,923 | INFO     | chi2: 10.71598899718982
[2025-11-21 23:58:52] 2025-11-21 22:57:53,923 | INFO     | current chi2=10.71598899718982 (change=23.469011489030827 %)
[2025-11-21 23:58:52] 2025-11-21 22:57:53,923 | INFO     | right removable region: 1466
[2025-11-21 23:58:52] 2025-11-21 22:57:53,925 | INFO     | sum of square deviations: 978966588296.4425
[2025-11-21 23:58:52] 2025-11-21 22:57:53,936 | INFO     | monitor loop #6007: job 0:6891568327 is in state 'finished'
[2025-11-21 23:58:52] 2025-11-21 22:57:53,936 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-21 23:58:52] 2025-11-21 22:57:53,996 | INFO     | sum of deviations: 2238373945937.562
[2025-11-21 23:58:52] 2025-11-21 22:57:53,996 | INFO     | mean x: 1763721017.1124744
[2025-11-21 23:58:52] 2025-11-21 22:57:53,996 | INFO     | mean y: 2871140.60872529
[2025-11-21 23:58:52] 2025-11-21 22:57:53,996 | INFO     | intersect: -4029817226.700088
[2025-11-21 23:58:52] 2025-11-21 22:57:53,998 | INFO     | chi2: 11.568241822855969
[2025-11-21 23:58:52] 2025-11-21 22:57:53,998 | INFO     | current chi2=11.568241822855969 (change=17.38242897885827 %)
[2025-11-21 23:58:52] 2025-11-21 22:57:53,998 | INFO     | left removable region: 10
[2025-11-21 23:58:52] 2025-11-21 22:57:54,000 | INFO     | sum of square deviations: 957109972185.6812
[2025-11-21 23:58:52] 2025-11-21 22:57:54,055 | INFO     | sum of deviations: 2735691182927.9883
[2025-11-21 23:58:52] 2025-11-21 22:57:54,056 | INFO     | mean x: 1763720986.6181319
[2025-11-21 23:58:52] 2025-11-21 22:57:54,056 | INFO     | mean y: 2881965.848901099
[2025-11-21 23:58:52] 2025-11-21 22:57:54,056 | INFO     | intersect: -5038331784.351393
[2025-11-21 23:58:52] 2025-11-21 22:57:54,058 | INFO     | chi2: 7.483423422684951
[2025-11-21 23:58:52] 2025-11-21 22:57:54,058 | INFO     | current memory leak: 2.86 B/s (using 1456 data points, chi2=7.48)
[2025-11-21 23:58:52] 2025-11-21 22:57:54,060 | INFO     | could have reported an average CPU frequency of 1999 MHz (50 samples)
[2025-11-21 23:58:52] 2025-11-21 22:57:54,060 | INFO     | ..............................
[2025-11-21 23:58:52] 2025-11-21 22:57:54,061 | INFO     | . Timing measurements:
[2025-11-21 23:58:52] 2025-11-21 22:57:54,061 | INFO     | . get job = 0 s
[2025-11-21 23:58:52] 2025-11-21 22:57:54,061 | INFO     | . initial setup = 2 s
[2025-11-21 23:58:52] 2025-11-21 22:57:54,061 | INFO     | . payload setup = 10 s
[2025-11-21 23:58:52] 2025-11-21 22:57:54,061 | INFO     | . stage-in = 0 s
[2025-11-21 23:58:52] 2025-11-21 22:57:54,061 | INFO     | . payload execution = 89787 s
[2025-11-21 23:58:52] 2025-11-21 22:57:54,061 | INFO     | . stage-out = 5 s
[2025-11-21 23:58:52] 2025-11-21 22:57:54,061 | INFO     | . log creation = 2 s
[2025-11-21 23:58:52] 2025-11-21 22:57:54,061 | INFO     | ..............................
[2025-11-21 23:58:52] 2025-11-21 22:57:54,190 | INFO     | 
[2025-11-21 23:58:52] 2025-11-21 22:57:54,190 | INFO     | job summary report
[2025-11-21 23:58:52] 2025-11-21 22:57:54,190 | INFO     | --------------------------------------------------
[2025-11-21 23:58:52] 2025-11-21 22:57:54,190 | INFO     | PanDA job id: 6891568327
[2025-11-21 23:58:52] 2025-11-21 22:57:54,190 | INFO     | task id: 47493068
[2025-11-21 23:58:52] 2025-11-21 22:57:54,190 | INFO     | errors: (none)
[2025-11-21 23:58:52] 2025-11-21 22:57:54,191 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-21 23:58:52] 2025-11-21 22:57:54,191 | INFO     | pilot state: finished 
[2025-11-21 23:58:52] 2025-11-21 22:57:54,191 | INFO     | transexitcode: 0
[2025-11-21 23:58:52] 2025-11-21 22:57:54,191 | INFO     | exeerrorcode: 0
[2025-11-21 23:58:52] 2025-11-21 22:57:54,191 | INFO     | exeerrordiag: 
[2025-11-21 23:58:52] 2025-11-21 22:57:54,191 | INFO     | exitcode: 0
[2025-11-21 23:58:52] 2025-11-21 22:57:54,191 | INFO     | exitmsg: OK
[2025-11-21 23:58:52] 2025-11-21 22:57:54,191 | INFO     | cpuconsumptiontime: 338117 s
[2025-11-21 23:58:52] 2025-11-21 22:57:54,191 | INFO     | nevents: 1000
[2025-11-21 23:58:52] 2025-11-21 22:57:54,191 | INFO     | neventsw: 0
[2025-11-21 23:58:52] 2025-11-21 22:57:54,191 | INFO     | pid: 11689
[2025-11-21 23:58:52] 2025-11-21 22:57:54,191 | INFO     | pgrp: 11689
[2025-11-21 23:58:52] 2025-11-21 22:57:54,191 | INFO     | corecount: 8
[2025-11-21 23:58:52] 2025-11-21 22:57:54,192 | INFO     | event service: False
[2025-11-21 23:58:52] 2025-11-21 22:57:54,192 | INFO     | sizes: {0: 2298625, 1: 2298824, 10: 2299086, 12: 2299114, 89802: 2361323, 89808: 2370317, 89810: 2370501, 89907: 2370747}
[2025-11-21 23:58:52] 2025-11-21 22:57:54,192 | INFO     | --------------------------------------------------
[2025-11-21 23:58:52] 2025-11-21 22:57:54,192 | INFO     | 
[2025-11-21 23:58:52] 2025-11-21 22:57:54,192 | INFO     | executing command: ls -lF /var/lib/boinc/slots/6
[2025-11-21 23:58:52] 2025-11-21 22:57:54,888 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-21 23:58:52] 2025-11-21 22:57:54,888 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-21 23:58:52] 2025-11-21 22:57:54,888 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-21 23:58:52] 2025-11-21 22:57:54,889 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-21 23:58:52] 2025-11-21 22:57:54,889 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-21 23:58:52] 2025-11-21 22:57:54,889 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-21 23:58:52] 2025-11-21 22:57:54,889 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-21 23:58:52] 2025-11-21 22:57:54,889 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-21 23:58:52] 2025-11-21 22:57:54,889 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-21 23:58:52] 2025-11-21 22:57:54,889 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-21 23:58:52] 2025-11-21 22:57:54,889 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-21 23:58:52] 2025-11-21 22:57:54,889 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-21 23:58:52] 2025-11-21 22:57:54,889 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-21 23:58:52] 2025-11-21 22:57:54,889 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-21 23:58:52] 2025-11-21 22:57:54,890 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-21 23:58:52] 2025-11-21 22:57:54,890 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-21 23:58:52] 2025-11-21 22:57:54,890 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-21 23:58:52] 2025-11-21 22:57:54,890 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-21 23:58:52] 2025-11-21 22:57:54,890 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-21 23:58:52] 2025-11-21 22:57:54,890 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-21 23:58:52] 2025-11-21 22:57:54,890 | INFO     | job 6891568327 has completed (purged errors)
[2025-11-21 23:58:52] 2025-11-21 22:57:54,890 | INFO     | overall cleanup function is called
[2025-11-21 23:58:52] 2025-11-21 22:57:55,921 | INFO     | --- collectZombieJob: --- 10, [11689]
[2025-11-21 23:58:52] 2025-11-21 22:57:55,921 | INFO     | zombie collector waiting for pid 11689
[2025-11-21 23:58:52] 2025-11-21 22:57:55,922 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-21 23:58:52] 2025-11-21 22:57:55,922 | INFO     | collected zombie processes
[2025-11-21 23:58:52] 2025-11-21 22:57:55,922 | INFO     | will attempt to kill all subprocesses of pid=11689
[2025-11-21 23:58:52] 2025-11-21 22:57:56,050 | INFO     | process IDs to be killed: [11689] (in reverse order)
[2025-11-21 23:58:52] 2025-11-21 22:57:56,656 | WARNING  | found no corresponding commands to process id(s)
[2025-11-21 23:58:52] 2025-11-21 22:57:56,657 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-21 23:58:52] 2025-11-21 22:57:56,661 | INFO     | did not find any defunct processes belonging to 11689
[2025-11-21 23:58:52] 2025-11-21 22:57:56,665 | INFO     | did not find any defunct processes belonging to 11689
[2025-11-21 23:58:52] 2025-11-21 22:57:56,676 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-21 23:58:52] 2025-11-21 22:57:56,676 | INFO     | ready for new job
[2025-11-21 23:58:52] 2025-11-21 22:57:56,676 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-21 23:58:52] 2025-11-21 22:57:56,683 | INFO     | ***************************************
[2025-11-21 23:58:52] 2025-11-21 22:57:56,683 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-21 23:58:52] 2025-11-21 22:57:56,683 | INFO     | ***************************************
[2025-11-21 23:58:52] 2025-11-21 22:57:56,683 | INFO     | 
[2025-11-21 23:58:52] 2025-11-21 22:57:56,684 | INFO     | pilot is running in a VM
[2025-11-21 23:58:52] 2025-11-21 22:57:56,684 | INFO     | architecture information:
[2025-11-21 23:58:52] 2025-11-21 22:57:56,685 | INFO     | executing command: cat /etc/os-release
[2025-11-21 23:58:52] 2025-11-21 22:57:56,713 | INFO     | cat /etc/os-release:
[2025-11-21 23:58:52] NAME="CentOS Linux"
[2025-11-21 23:58:52] VERSION="7 (Core)"
[2025-11-21 23:58:52] ID="centos"
[2025-11-21 23:58:52] ID_LIKE="rhel fedora"
[2025-11-21 23:58:52] VERSION_ID="7"
[2025-11-21 23:58:52] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-21 23:58:52] ANSI_COLOR="0;31"
[2025-11-21 23:58:52] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-21 23:58:52] HOME_URL="https://www.centos.org/"
[2025-11-21 23:58:52] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-21 23:58:52] 
[2025-11-21 23:58:52] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-21 23:58:52] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-21 23:58:52] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-21 23:58:52] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-21 23:58:52] 
[2025-11-21 23:58:52] 2025-11-21 22:57:56,714 | INFO     | ***************************************
[2025-11-21 23:58:52] 2025-11-21 22:57:57,218 | INFO     | executing command: df -mP /var/lib/boinc/slots/6
[2025-11-21 23:58:52] 2025-11-21 22:57:57,287 | INFO     | sufficient remaining disk space (495026438144 B)
[2025-11-21 23:58:52] 2025-11-21 22:57:57,287 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-21 23:58:52] 2025-11-21 22:57:57,287 | INFO     | current server update state: UPDATING_FINAL
[2025-11-21 23:58:52] 2025-11-21 22:57:57,288 | INFO     | update_server=False
[2025-11-21 23:58:52] 2025-11-21 22:57:57,288 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-21 23:58:52] 2025-11-21 22:57:57,446 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-21 23:58:52] 2025-11-21 22:57:57,447 | INFO     | aborting loop
[2025-11-21 23:58:52] 2025-11-21 22:57:57,474 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-21 23:58:52] 2025-11-21 22:57:57,877 | INFO     | all payload control threads have been joined
[2025-11-21 23:58:52] 2025-11-21 22:57:57,901 | INFO     | all data control threads have been joined
[2025-11-21 23:58:52] 2025-11-21 22:57:58,293 | INFO     | [job] retrieve thread has finished
[2025-11-21 23:58:52] 2025-11-21 22:57:58,383 | INFO     | [payload] execute_payloads thread has finished
[2025-11-21 23:58:52] 2025-11-21 22:57:58,384 | INFO     | all job control threads have been joined
[2025-11-21 23:58:52] 2025-11-21 22:57:58,425 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-21 23:58:52] 2025-11-21 22:57:58,452 | INFO     | [job] job monitor thread has finished
[2025-11-21 23:58:52] 2025-11-21 22:57:58,479 | INFO     | [data] copytool_in thread has finished
[2025-11-21 23:58:52] 2025-11-21 22:57:58,531 | INFO     | [job] validate thread has finished
[2025-11-21 23:58:52] 2025-11-21 22:57:58,776 | INFO     | [payload] failed_post thread has finished
[2025-11-21 23:58:52] 2025-11-21 22:57:58,883 | INFO     | [payload] control thread has finished
[2025-11-21 23:58:52] 2025-11-21 22:57:58,907 | INFO     | [data] control thread has finished
[2025-11-21 23:58:52] 2025-11-21 22:57:59,205 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-21 23:58:52] 2025-11-21 22:57:59,222 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-21 23:58:52] 2025-11-21 22:57:59,244 | INFO     | [payload] validate_pre thread has finished
[2025-11-21 23:58:52] 2025-11-21 22:57:59,391 | INFO     | [job] control thread has finished
[2025-11-21 23:58:52] 2025-11-21 22:57:59,623 | INFO     | [payload] validate_post thread has finished
[2025-11-21 23:58:52] 2025-11-21 22:57:59,677 | INFO     | [job] create_data_payload thread has finished
[2025-11-21 23:58:52] 2025-11-21 22:58:00,211 | INFO     | [job] queue monitor thread has finished
[2025-11-21 23:58:52] 2025-11-21 22:58:00,432 | INFO     | [data] copytool_out thread has finished
[2025-11-21 23:58:52] 2025-11-21 22:58:01,483 | INFO     | [data] queue_monitor thread has finished
[2025-11-21 23:58:52] 2025-11-21 22:58:26,889 | INFO     | PID=5215 has CPU usage=2.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-11-21 23:58:52] 2025-11-21 22:58:26,889 | INFO     | .. there are 9 such processes running
[2025-11-21 23:58:52] 2025-11-21 22:58:26,889 | INFO     | found 0 job(s) in 20 queues
[2025-11-21 23:58:52] 2025-11-21 22:58:26,890 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-21 23:58:52] 2025-11-21 22:58:26,890 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-21 23:58:52] 2025-11-21 22:58:42,562 | INFO     | [monitor] cgroup control has ended
[2025-11-21 23:58:52] 2025-11-21 22:58:44,641 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140633266517824)>', '<ExcThread(monitor, started 140632530089728)>']
[2025-11-21 23:58:52] 2025-11-21 22:58:44,997 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-21 23:58:52] 2025-11-21 22:58:44,997 | INFO     | [monitor] control thread has ended
[2025-11-21 23:58:52] 2025-11-21 22:58:49,667 | INFO     | all workflow threads have been joined
[2025-11-21 23:58:52] 2025-11-21 22:58:49,668 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-21 23:58:52] 2025-11-21 22:58:49,668 | INFO     | traces error code: 0
[2025-11-21 23:58:52] 2025-11-21 22:58:49,668 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-21 23:58:52] 2025-11-21 22:58:50,124 [wrapper] ==== pilot stdout END ====
[2025-11-21 23:58:52] 2025-11-21 22:58:50,138 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-21 23:58:52] 2025-11-21 22:58:50,153 [wrapper] pilotpid: 5215
[2025-11-21 23:58:52] 2025-11-21 22:58:50,210 [wrapper] Pilot exit status: 0
[2025-11-21 23:58:52] 2025-11-21 22:58:50,587 [wrapper] pandaids: 6891568327
[2025-11-21 23:58:52] 2025-11-21 22:58:51,138 [wrapper] cleanup supervisor_pilot 18996 5216
[2025-11-21 23:58:52] 2025-11-21 22:58:51,235 [wrapper] Test setup, not cleaning
[2025-11-21 23:58:52] 2025-11-21 22:58:51,332 [wrapper] apfmon messages muted
[2025-11-21 23:58:52] 2025-11-21 22:58:51,439 [wrapper] ==== wrapper stdout END ====
[2025-11-21 23:58:52] 2025-11-21 22:58:51,549 [wrapper] ==== wrapper stderr END ====
[2025-11-21 23:58:52]  *** Error codes and diagnostics ***
[2025-11-21 23:58:52]     "exeErrorCode": 0,
[2025-11-21 23:58:52]     "exeErrorDiag": "",
[2025-11-21 23:58:52]     "pilotErrorCode": 0,
[2025-11-21 23:58:52]     "pilotErrorDiag": "",
[2025-11-21 23:58:52]  *** Listing of results directory ***
[2025-11-21 23:58:52] total 1327188
[2025-11-21 23:58:52] -rw-r--r--. 1 boinc boinc    576529 Nov 18 16:15 pilot3.tar.gz
[2025-11-21 23:58:52] -rw-r--r--. 1 boinc boinc      5112 Nov 18 16:32 queuedata.json
[2025-11-21 23:58:52] -rwx------. 1 boinc boinc     36292 Nov 18 16:33 runpilot2-wrapper.sh
[2025-11-21 23:58:52] -rw-r--r--. 1 boinc boinc       100 Nov 20 22:58 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-21 23:58:52] -rwxr-xr-x. 1 boinc boinc      7986 Nov 20 22:58 run_atlas
[2025-11-21 23:58:52] -rw-r--r--. 1 boinc boinc       105 Nov 20 22:58 job.xml
[2025-11-21 23:58:52] -rw-r--r--. 2 boinc boinc 408413375 Nov 20 22:58 EVNT.47493065._000187.pool.root.1
[2025-11-21 23:58:52] -rw-r--r--. 1 boinc boinc      6389 Nov 20 22:58 init_data.xml
[2025-11-21 23:58:52] -rw-r--r--. 2 boinc boinc     15120 Nov 20 22:58 start_atlas.sh
[2025-11-21 23:58:52] drwxrwx--x. 2 boinc boinc        68 Nov 20 22:58 shared
[2025-11-21 23:58:52] -rw-r--r--. 2 boinc boinc    590103 Nov 20 22:58 input.tar.gz
[2025-11-21 23:58:52] -rw-r--r--. 1 boinc boinc         0 Nov 20 22:58 boinc_lockfile
[2025-11-21 23:58:52] -rw-r--r--. 1 boinc boinc      2773 Nov 20 22:58 pandaJob.out
[2025-11-21 23:58:52] -rw-------. 1 boinc boinc    989440 Nov 20 22:59 agis_schedconf.cvmfs.json
[2025-11-21 23:58:52] drwx------. 5 boinc boinc      4096 Nov 20 22:59 pilot3
[2025-11-21 23:58:52] -rw-r--r--. 1 boinc boinc       533 Nov 21 23:32 boinc_task_state.xml
[2025-11-21 23:58:52] -rw-------. 1 boinc boinc 917737485 Nov 21 23:55 HITS.47493068._001864.pool.root.1
[2025-11-21 23:58:52] -rw-------. 1 boinc boinc      1034 Nov 21 23:56 memory_monitor_summary.json
[2025-11-21 23:58:52] -rw-------. 1 boinc boinc   1526164 Nov 21 23:56 agis_ddmendpoints.agis.ALL.json
[2025-11-21 23:58:52] -rw-------. 1 boinc boinc   2533286 Nov 21 23:56 log.47493068._001864.job.log.tgz.1
[2025-11-21 23:58:52] -rw-------. 1 boinc boinc        95 Nov 21 23:57 pilot_heartbeat.json
[2025-11-21 23:58:52] -rw-------. 1 boinc boinc      7943 Nov 21 23:57 heartbeat.json
[2025-11-21 23:58:52] -rw-r--r--. 1 boinc boinc      8192 Nov 21 23:58 boinc_mmap_file
[2025-11-21 23:58:52] -rw-r--r--. 1 boinc boinc        29 Nov 21 23:58 wrapper_checkpoint.txt
[2025-11-21 23:58:52] -rw-------. 1 boinc boinc      4883 Nov 21 23:58 pilotlog.txt
[2025-11-21 23:58:52] -rw-------. 1 boinc boinc  11952957 Nov 21 23:58 log.47493068._001864.job.log.1
[2025-11-21 23:58:52] -rw-------. 1 boinc boinc       353 Nov 21 23:58 output.list
[2025-11-21 23:58:52] -rw-r--r--. 1 boinc boinc       620 Nov 21 23:58 runtime_log
[2025-11-21 23:58:52] -rw-------. 1 boinc boinc  14510080 Nov 21 23:58 result.tar.gz
[2025-11-21 23:58:52] -rw-------. 1 boinc boinc       662 Nov 21 23:58 VvzMDmYtcf8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmrKFKDmhsP03n.diag
[2025-11-21 23:58:52] -rw-r--r--. 1 boinc boinc      8703 Nov 21 23:58 runtime_log.err
[2025-11-21 23:58:52] -rw-r--r--. 1 boinc boinc     21474 Nov 21 23:58 stderr.txt
[2025-11-21 23:58:52] HITS file was successfully produced:
[2025-11-21 23:58:52] -rw-------. 1 boinc boinc 917737485 Nov 21 23:55 shared/HITS.pool.root.1
[2025-11-21 23:58:52]  *** Contents of shared directory: ***
[2025-11-21 23:58:52] total 1309844
[2025-11-21 23:58:52] -rw-r--r--. 2 boinc boinc 408413375 Nov 20 22:58 ATLAS.root_0
[2025-11-21 23:58:52] -rw-r--r--. 2 boinc boinc     15120 Nov 20 22:58 start_atlas.sh
[2025-11-21 23:58:52] -rw-r--r--. 2 boinc boinc    590103 Nov 20 22:58 input.tar.gz
[2025-11-21 23:58:52] -rw-------. 1 boinc boinc 917737485 Nov 21 23:55 HITS.pool.root.1
[2025-11-21 23:58:52] -rw-------. 1 boinc boinc  14510080 Nov 21 23:58 result.tar.gz
23:58:54 (1475): run_atlas exited; CPU time 338747.065389
23:58:54 (1475): called boinc_finish(0)

</stderr_txt>
]]>

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