Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
17:26:59 (27009): wrapper (7.7.26015): starting
17:26:59 (27009): wrapper: running run_atlas (--nthreads 8)
[2025-11-20 17:26:59] Arguments: --nthreads 8
[2025-11-20 17:26:59] Threads: 8
[2025-11-20 17:26:59] Checking for CVMFS
[2025-11-20 17:27:00] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-20 17:27:01] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-20 17:27:01] Running cvmfs_config stat atlas.cern.ch
[2025-11-20 17:27:02] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-20 17:27:02] 2.11.2.0 22848 276933 146212 153088 0 84 21897150 25165824 4632 130560 2 141930472 99.885 76412031 3079 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-20 17:27:02] CVMFS is ok
[2025-11-20 17:27:02] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-20 17:27:02] Checking for apptainer binary...
[2025-11-20 17:27:02] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-20 17:27:02] Running /usr/bin/apptainer --version
[2025-11-20 17:27:02] apptainer version 1.3.2-1.el7
[2025-11-20 17:27:02] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-20 17:27:18] cg-vwn482.simple-grid.lan
[2025-11-20 17:27:18] apptainer works
[2025-11-20 17:27:19] Set ATHENA_PROC_NUMBER=8
[2025-11-20 17:27:19] Set ATHENA_CORE_NUMBER=8
[2025-11-20 17:27:19] Starting ATLAS job with PandaID=6891579425
[2025-11-20 17:27:19] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-21 15:57:59]  *** The last 200 lines of the pilot log: ***
[2025-11-21 15:57:59] 2025-11-21 14:56:55,857 | INFO     | time since job start (80727s) is within the limit (172800.0s)
[2025-11-21 15:57:59] 2025-11-21 14:56:57,092 | INFO     | PID=30795 has CPU usage=1.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-21 15:57:59] 2025-11-21 14:56:57,092 | INFO     | .. there are 9 such processes running
[2025-11-21 15:57:59] 2025-11-21 14:56:57,516 | INFO     | monitor loop #5468: job 0:6891579425 is in state 'finished'
[2025-11-21 15:57:59] 2025-11-21 14:56:57,516 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-21 15:57:59] 2025-11-21 14:56:58,093 | INFO     | time since job start (80730s) is within the limit (172800.0s)
[2025-11-21 15:57:59] 2025-11-21 14:57:00,029 | INFO     | monitor loop #5469: job 0:6891579425 is in state 'finished'
[2025-11-21 15:57:59] 2025-11-21 14:57:00,029 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-21 15:57:59] 2025-11-21 14:57:00,100 | INFO     | time since job start (80732s) is within the limit (172800.0s)
[2025-11-21 15:57:59] 2025-11-21 14:57:02,111 | INFO     | time since job start (80734s) is within the limit (172800.0s)
[2025-11-21 15:57:59] 2025-11-21 14:57:02,538 | INFO     | monitor loop #5470: job 0:6891579425 is in state 'finished'
[2025-11-21 15:57:59] 2025-11-21 14:57:02,538 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-21 15:57:59] 2025-11-21 14:57:04,118 | INFO     | time since job start (80736s) is within the limit (172800.0s)
[2025-11-21 15:57:59] 2025-11-21 14:57:05,045 | INFO     | monitor loop #5471: job 0:6891579425 is in state 'finished'
[2025-11-21 15:57:59] 2025-11-21 14:57:05,045 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-21 15:57:59] 2025-11-21 14:57:06,128 | INFO     | time since job start (80738s) is within the limit (172800.0s)
[2025-11-21 15:57:59] 2025-11-21 14:57:06,741 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-21 15:57:59] 2025-11-21 14:57:06,742 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 2249.998
[2025-11-21 15:57:59] 2025-11-21 14:57:06,744 | INFO     | using path: /var/lib/boinc/slots/1/PanDA_Pilot-6891579425/memory_monitor_summary.json (trf name=prmon)
[2025-11-21 15:57:59] 2025-11-21 14:57:06,745 | INFO     | extracted standard info from prmon json
[2025-11-21 15:57:59] 2025-11-21 14:57:06,745 | INFO     | extracted standard memory fields from prmon json
[2025-11-21 15:57:59] 2025-11-21 14:57:06,745 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-21 15:57:59] 2025-11-21 14:57:06,784 | INFO     | fitting pss+swap vs Time
[2025-11-21 15:57:59] 2025-11-21 14:57:06,805 | INFO     | sum of square deviations: 703499116660.8292
[2025-11-21 15:57:59] 2025-11-21 14:57:06,883 | INFO     | sum of deviations: 1407883190011.1423
[2025-11-21 15:57:59] 2025-11-21 14:57:06,883 | INFO     | mean x: 1763696858.655251
[2025-11-21 15:57:59] 2025-11-21 14:57:06,883 | INFO     | mean y: 2859703.5654490106
[2025-11-21 15:57:59] 2025-11-21 14:57:06,883 | INFO     | intersect: -3526752631.0770783
[2025-11-21 15:57:59] 2025-11-21 14:57:06,885 | INFO     | chi2: 27.92435765208304
[2025-11-21 15:57:59] 2025-11-21 14:57:06,887 | INFO     | sum of square deviations: 695499271501.6304
[2025-11-21 15:57:59] 2025-11-21 14:57:06,940 | INFO     | sum of deviations: 1843022107119.3777
[2025-11-21 15:57:59] 2025-11-21 14:57:06,941 | INFO     | mean x: 1763696706.159664
[2025-11-21 15:57:59] 2025-11-21 14:57:06,941 | INFO     | mean y: 2867996.5867074104
[2025-11-21 15:57:59] 2025-11-21 14:57:06,941 | INFO     | intersect: -4670799040.745725
[2025-11-21 15:57:59] 2025-11-21 14:57:06,942 | INFO     | chi2: 24.781744495182096
[2025-11-21 15:57:59] 2025-11-21 14:57:06,943 | INFO     | current chi2=24.781744495182096 (change=11.254021295872198 %)
[2025-11-21 15:57:59] 2025-11-21 14:57:06,943 | INFO     | right removable region: 1308
[2025-11-21 15:57:59] 2025-11-21 14:57:06,945 | INFO     | sum of square deviations: 695498345521.6305
[2025-11-21 15:57:59] 2025-11-21 14:57:06,993 | INFO     | sum of deviations: 841900532429.8921
[2025-11-21 15:57:59] 2025-11-21 14:57:06,994 | INFO     | mean x: 1763697011.159664
[2025-11-21 15:57:59] 2025-11-21 14:57:06,994 | INFO     | mean y: 2870491.5699006873
[2025-11-21 15:57:59] 2025-11-21 14:57:06,994 | INFO     | intersect: -2132084195.6719115
[2025-11-21 15:57:59] 2025-11-21 14:57:06,995 | INFO     | chi2: 22.94667630965611
[2025-11-21 15:57:59] 2025-11-21 14:57:06,995 | INFO     | current chi2=22.94667630965611 (change=17.825589417114546 %)
[2025-11-21 15:57:59] 2025-11-21 14:57:06,995 | INFO     | left removable region: 10
[2025-11-21 15:57:59] 2025-11-21 14:57:06,997 | INFO     | sum of square deviations: 678111747459.2123
[2025-11-21 15:57:59] 2025-11-21 14:57:07,039 | INFO     | sum of deviations: 863269672821.9822
[2025-11-21 15:57:59] 2025-11-21 14:57:07,040 | INFO     | mean x: 1763696980.6694915
[2025-11-21 15:57:59] 2025-11-21 14:57:07,040 | INFO     | mean y: 2890378.095531587
[2025-11-21 15:57:59] 2025-11-21 14:57:07,040 | INFO     | intersect: -2242382795.7794714
[2025-11-21 15:57:59] 2025-11-21 14:57:07,041 | INFO     | chi2: 15.211179957815329
[2025-11-21 15:57:59] 2025-11-21 14:57:07,042 | INFO     | current memory leak: 1.27 B/s (using 1298 data points, chi2=15.21)
[2025-11-21 15:57:59] 2025-11-21 14:57:07,044 | INFO     | could have reported an average CPU frequency of 2249 MHz (45 samples)
[2025-11-21 15:57:59] 2025-11-21 14:57:07,045 | INFO     | ..............................
[2025-11-21 15:57:59] 2025-11-21 14:57:07,045 | INFO     | . Timing measurements:
[2025-11-21 15:57:59] 2025-11-21 14:57:07,045 | INFO     | . get job = 0 s
[2025-11-21 15:57:59] 2025-11-21 14:57:07,045 | INFO     | . initial setup = 7 s
[2025-11-21 15:57:59] 2025-11-21 14:57:07,045 | INFO     | . payload setup = 171 s
[2025-11-21 15:57:59] 2025-11-21 14:57:07,045 | INFO     | . stage-in = 0 s
[2025-11-21 15:57:59] 2025-11-21 14:57:07,045 | INFO     | . payload execution = 80260 s
[2025-11-21 15:57:59] 2025-11-21 14:57:07,045 | INFO     | . stage-out = 8 s
[2025-11-21 15:57:59] 2025-11-21 14:57:07,045 | INFO     | . log creation = 2 s
[2025-11-21 15:57:59] 2025-11-21 14:57:07,045 | INFO     | ..............................
[2025-11-21 15:57:59] 2025-11-21 14:57:07,323 | INFO     | 
[2025-11-21 15:57:59] 2025-11-21 14:57:07,323 | INFO     | job summary report
[2025-11-21 15:57:59] 2025-11-21 14:57:07,323 | INFO     | --------------------------------------------------
[2025-11-21 15:57:59] 2025-11-21 14:57:07,323 | INFO     | PanDA job id: 6891579425
[2025-11-21 15:57:59] 2025-11-21 14:57:07,324 | INFO     | task id: 47493068
[2025-11-21 15:57:59] 2025-11-21 14:57:07,324 | INFO     | errors: (none)
[2025-11-21 15:57:59] 2025-11-21 14:57:07,324 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-21 15:57:59] 2025-11-21 14:57:07,324 | INFO     | pilot state: finished 
[2025-11-21 15:57:59] 2025-11-21 14:57:07,324 | INFO     | transexitcode: 0
[2025-11-21 15:57:59] 2025-11-21 14:57:07,324 | INFO     | exeerrorcode: 0
[2025-11-21 15:57:59] 2025-11-21 14:57:07,324 | INFO     | exeerrordiag: 
[2025-11-21 15:57:59] 2025-11-21 14:57:07,324 | INFO     | exitcode: 0
[2025-11-21 15:57:59] 2025-11-21 14:57:07,324 | INFO     | exitmsg: OK
[2025-11-21 15:57:59] 2025-11-21 14:57:07,324 | INFO     | cpuconsumptiontime: 297921 s
[2025-11-21 15:57:59] 2025-11-21 14:57:07,324 | INFO     | nevents: 1000
[2025-11-21 15:57:59] 2025-11-21 14:57:07,325 | INFO     | neventsw: 0
[2025-11-21 15:57:59] 2025-11-21 14:57:07,325 | INFO     | pid: 4989
[2025-11-21 15:57:59] 2025-11-21 14:57:07,325 | INFO     | pgrp: 4989
[2025-11-21 15:57:59] 2025-11-21 14:57:07,325 | INFO     | corecount: 8
[2025-11-21 15:57:59] 2025-11-21 14:57:07,325 | INFO     | event service: False
[2025-11-21 15:57:59] 2025-11-21 14:57:07,325 | INFO     | sizes: {0: 2298796, 1: 2298824, 12: 2298824, 23: 2298852, 33: 2298880, 44: 2298936, 55: 2299092, 66: 2299120, 76: 2299148, 87: 2299204, 97: 2299494, 98: 2299802, 8
[2025-11-21 15:57:59] 2025-11-21 14:57:07,325 | INFO     | --------------------------------------------------
[2025-11-21 15:57:59] 2025-11-21 14:57:07,325 | INFO     | 
[2025-11-21 15:57:59] 2025-11-21 14:57:07,325 | INFO     | executing command: ls -lF /var/lib/boinc/slots/1
[2025-11-21 15:57:59] 2025-11-21 14:57:07,809 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-21 15:57:59] 2025-11-21 14:57:07,810 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-21 15:57:59] 2025-11-21 14:57:07,810 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-21 15:57:59] 2025-11-21 14:57:07,810 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-21 15:57:59] 2025-11-21 14:57:07,810 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-21 15:57:59] 2025-11-21 14:57:07,810 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-21 15:57:59] 2025-11-21 14:57:07,810 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-21 15:57:59] 2025-11-21 14:57:07,810 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-21 15:57:59] 2025-11-21 14:57:07,811 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-21 15:57:59] 2025-11-21 14:57:07,811 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-21 15:57:59] 2025-11-21 14:57:07,811 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-21 15:57:59] 2025-11-21 14:57:07,811 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-21 15:57:59] 2025-11-21 14:57:07,811 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-21 15:57:59] 2025-11-21 14:57:07,811 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-21 15:57:59] 2025-11-21 14:57:07,811 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-21 15:57:59] 2025-11-21 14:57:07,811 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-21 15:57:59] 2025-11-21 14:57:07,811 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-21 15:57:59] 2025-11-21 14:57:07,811 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-21 15:57:59] 2025-11-21 14:57:07,811 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-21 15:57:59] 2025-11-21 14:57:07,812 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-21 15:57:59] 2025-11-21 14:57:07,812 | INFO     | job 6891579425 has completed (purged errors)
[2025-11-21 15:57:59] 2025-11-21 14:57:07,812 | INFO     | overall cleanup function is called
[2025-11-21 15:57:59] 2025-11-21 14:57:08,831 | INFO     | --- collectZombieJob: --- 10, [4989]
[2025-11-21 15:57:59] 2025-11-21 14:57:08,831 | INFO     | zombie collector waiting for pid 4989
[2025-11-21 15:57:59] 2025-11-21 14:57:08,831 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-21 15:57:59] 2025-11-21 14:57:08,831 | INFO     | collected zombie processes
[2025-11-21 15:57:59] 2025-11-21 14:57:08,831 | INFO     | will attempt to kill all subprocesses of pid=4989
[2025-11-21 15:57:59] 2025-11-21 14:57:08,936 | INFO     | process IDs to be killed: [4989] (in reverse order)
[2025-11-21 15:57:59] 2025-11-21 14:57:09,862 | WARNING  | found no corresponding commands to process id(s)
[2025-11-21 15:57:59] 2025-11-21 14:57:09,862 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-21 15:57:59] 2025-11-21 14:57:09,870 | INFO     | did not find any defunct processes belonging to 4989
[2025-11-21 15:57:59] 2025-11-21 14:57:09,874 | INFO     | did not find any defunct processes belonging to 4989
[2025-11-21 15:57:59] 2025-11-21 14:57:09,929 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-21 15:57:59] 2025-11-21 14:57:09,930 | INFO     | ready for new job
[2025-11-21 15:57:59] 2025-11-21 14:57:09,930 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-21 15:57:59] 2025-11-21 14:57:09,936 | INFO     | ***************************************
[2025-11-21 15:57:59] 2025-11-21 14:57:09,937 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-21 15:57:59] 2025-11-21 14:57:09,937 | INFO     | ***************************************
[2025-11-21 15:57:59] 2025-11-21 14:57:09,937 | INFO     | 
[2025-11-21 15:57:59] 2025-11-21 14:57:09,937 | INFO     | pilot is running in a VM
[2025-11-21 15:57:59] 2025-11-21 14:57:09,937 | INFO     | architecture information:
[2025-11-21 15:57:59] 2025-11-21 14:57:09,944 | INFO     | executing command: cat /etc/os-release
[2025-11-21 15:57:59] 2025-11-21 14:57:10,100 | INFO     | cat /etc/os-release:
[2025-11-21 15:57:59] NAME="CentOS Linux"
[2025-11-21 15:57:59] VERSION="7 (Core)"
[2025-11-21 15:57:59] ID="centos"
[2025-11-21 15:57:59] ID_LIKE="rhel fedora"
[2025-11-21 15:57:59] VERSION_ID="7"
[2025-11-21 15:57:59] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-21 15:57:59] ANSI_COLOR="0;31"
[2025-11-21 15:57:59] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-21 15:57:59] HOME_URL="https://www.centos.org/"
[2025-11-21 15:57:59] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-21 15:57:59] 
[2025-11-21 15:57:59] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-21 15:57:59] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-21 15:57:59] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-21 15:57:59] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-21 15:57:59] 
[2025-11-21 15:57:59] 2025-11-21 14:57:10,100 | INFO     | ***************************************
[2025-11-21 15:57:59] 2025-11-21 14:57:10,603 | INFO     | executing command: df -mP /var/lib/boinc/slots/1
[2025-11-21 15:57:59] 2025-11-21 14:57:10,792 | INFO     | sufficient remaining disk space (495003369472 B)
[2025-11-21 15:57:59] 2025-11-21 14:57:10,793 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-21 15:57:59] 2025-11-21 14:57:10,793 | INFO     | current server update state: UPDATING_FINAL
[2025-11-21 15:57:59] 2025-11-21 14:57:10,793 | INFO     | update_server=False
[2025-11-21 15:57:59] 2025-11-21 14:57:10,793 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-21 15:57:59] 2025-11-21 14:57:11,068 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-21 15:57:59] 2025-11-21 14:57:11,068 | INFO     | aborting loop
[2025-11-21 15:57:59] 2025-11-21 14:57:11,187 | INFO     | all job control threads have been joined
[2025-11-21 15:57:59] 2025-11-21 14:57:11,781 | INFO     | all data control threads have been joined
[2025-11-21 15:57:59] 2025-11-21 14:57:11,799 | INFO     | [job] retrieve thread has finished
[2025-11-21 15:57:59] 2025-11-21 14:57:11,925 | INFO     | [payload] validate_post thread has finished
[2025-11-21 15:57:59] 2025-11-21 14:57:12,072 | INFO     | all payload control threads have been joined
[2025-11-21 15:57:59] 2025-11-21 14:57:12,077 | INFO     | [job] job monitor thread has finished
[2025-11-21 15:57:59] 2025-11-21 14:57:12,092 | INFO     | [payload] execute_payloads thread has finished
[2025-11-21 15:57:59] 2025-11-21 14:57:12,153 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-21 15:57:59] 2025-11-21 14:57:12,180 | INFO     | [job] create_data_payload thread has finished
[2025-11-21 15:57:59] 2025-11-21 14:57:12,193 | INFO     | [job] control thread has finished
[2025-11-21 15:57:59] 2025-11-21 14:57:12,204 | INFO     | [data] copytool_in thread has finished
[2025-11-21 15:57:59] 2025-11-21 14:57:12,208 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-21 15:57:59] 2025-11-21 14:57:12,263 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-21 15:57:59] 2025-11-21 14:57:12,316 | INFO     | [job] validate thread has finished
[2025-11-21 15:57:59] 2025-11-21 14:57:12,694 | INFO     | [payload] validate_pre thread has finished
[2025-11-21 15:57:59] 2025-11-21 14:57:12,787 | INFO     | [data] control thread has finished
[2025-11-21 15:57:59] 2025-11-21 14:57:13,002 | INFO     | [payload] failed_post thread has finished
[2025-11-21 15:57:59] 2025-11-21 14:57:13,039 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-21 15:57:59] 2025-11-21 14:57:13,078 | INFO     | [payload] control thread has finished
[2025-11-21 15:57:59] 2025-11-21 14:57:13,214 | INFO     | [job] queue monitor thread has finished
[2025-11-21 15:57:59] 2025-11-21 14:57:14,160 | INFO     | [data] copytool_out thread has finished
[2025-11-21 15:57:59] 2025-11-21 14:57:16,271 | INFO     | [data] queue_monitor thread has finished
[2025-11-21 15:57:59] 2025-11-21 14:57:39,293 | INFO     | PID=30795 has CPU usage=1.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-21 15:57:59] 2025-11-21 14:57:39,293 | INFO     | .. there are 9 such processes running
[2025-11-21 15:57:59] 2025-11-21 14:57:39,294 | INFO     | found 0 job(s) in 20 queues
[2025-11-21 15:57:59] 2025-11-21 14:57:39,295 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-21 15:57:59] 2025-11-21 14:57:39,295 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-21 15:57:59] 2025-11-21 14:57:48,783 | INFO     | [monitor] cgroup control has ended
[2025-11-21 15:57:59] 2025-11-21 14:57:50,643 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139795695421248)>', '<ExcThread(monitor, started 139795246331648)>']
[2025-11-21 15:57:59] 2025-11-21 14:57:51,367 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-21 15:57:59] 2025-11-21 14:57:51,367 | INFO     | [monitor] control thread has ended
[2025-11-21 15:57:59] 2025-11-21 14:57:55,669 | INFO     | all workflow threads have been joined
[2025-11-21 15:57:59] 2025-11-21 14:57:55,669 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-21 15:57:59] 2025-11-21 14:57:55,670 | INFO     | traces error code: 0
[2025-11-21 15:57:59] 2025-11-21 14:57:55,670 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-21 15:57:59] 2025-11-21 14:57:56,054 [wrapper] ==== pilot stdout END ====
[2025-11-21 15:57:59] 2025-11-21 14:57:56,107 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-21 15:57:59] 2025-11-21 14:57:56,116 [wrapper] pilotpid: 30795
[2025-11-21 15:57:59] 2025-11-21 14:57:56,169 [wrapper] Pilot exit status: 0
[2025-11-21 15:57:59] 2025-11-21 14:57:56,580 [wrapper] pandaids: 6891579425
[2025-11-21 15:57:59] 2025-11-21 14:57:57,923 [wrapper] cleanup supervisor_pilot 18633 30796
[2025-11-21 15:57:59] 2025-11-21 14:57:57,951 [wrapper] Test setup, not cleaning
[2025-11-21 15:57:59] 2025-11-21 14:57:58,095 [wrapper] apfmon messages muted
[2025-11-21 15:57:59] 2025-11-21 14:57:58,172 [wrapper] ==== wrapper stdout END ====
[2025-11-21 15:57:59] 2025-11-21 14:57:58,236 [wrapper] ==== wrapper stderr END ====
[2025-11-21 15:57:59]  *** Error codes and diagnostics ***
[2025-11-21 15:57:59]     "exeErrorCode": 0,
[2025-11-21 15:57:59]     "exeErrorDiag": "",
[2025-11-21 15:57:59]     "pilotErrorCode": 0,
[2025-11-21 15:57:59]     "pilotErrorDiag": "",
[2025-11-21 15:57:59]  *** Listing of results directory ***
[2025-11-21 15:57:59] total 1312056
[2025-11-21 15:57:59] -rw-r--r--. 1 boinc boinc    576529 Nov 18 17:45 pilot3.tar.gz
[2025-11-21 15:57:59] -rw-r--r--. 1 boinc boinc      5112 Nov 18 17:49 queuedata.json
[2025-11-21 15:57:59] -rwx------. 1 boinc boinc     36292 Nov 18 17:50 runpilot2-wrapper.sh
[2025-11-21 15:57:59] -rw-r--r--. 1 boinc boinc       100 Nov 20 17:26 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-21 15:57:59] -rwxr-xr-x. 1 boinc boinc      7986 Nov 20 17:26 run_atlas
[2025-11-21 15:57:59] -rw-r--r--. 1 boinc boinc       105 Nov 20 17:26 job.xml
[2025-11-21 15:57:59] -rw-r--r--. 2 boinc boinc 405497141 Nov 20 17:26 EVNT.47493065._000393.pool.root.1
[2025-11-21 15:57:59] -rw-r--r--. 2 boinc boinc    590098 Nov 20 17:26 input.tar.gz
[2025-11-21 15:57:59] -rw-r--r--. 1 boinc boinc      6391 Nov 20 17:26 init_data.xml
[2025-11-21 15:57:59] -rw-r--r--. 2 boinc boinc     15120 Nov 20 17:26 start_atlas.sh
[2025-11-21 15:57:59] drwxrwx--x. 2 boinc boinc        68 Nov 20 17:26 shared
[2025-11-21 15:57:59] -rw-r--r--. 1 boinc boinc         0 Nov 20 17:26 boinc_lockfile
[2025-11-21 15:57:59] -rw-r--r--. 1 boinc boinc      2773 Nov 20 17:27 pandaJob.out
[2025-11-21 15:57:59] -rw-------. 1 boinc boinc    989440 Nov 20 17:31 agis_schedconf.cvmfs.json
[2025-11-21 15:57:59] drwx------. 5 boinc boinc      4096 Nov 20 17:31 pilot3
[2025-11-21 15:57:59] -rw-r--r--. 1 boinc boinc       533 Nov 21 15:30 boinc_task_state.xml
[2025-11-21 15:57:59] -rw-------. 1 boinc boinc 907678736 Nov 21 15:53 HITS.47493068._003924.pool.root.1
[2025-11-21 15:57:59] -rw-------. 1 boinc boinc      1031 Nov 21 15:55 memory_monitor_summary.json
[2025-11-21 15:57:59] -rw-------. 1 boinc boinc   1526164 Nov 21 15:55 agis_ddmendpoints.agis.ALL.json
[2025-11-21 15:57:59] -rw-------. 1 boinc boinc   2435695 Nov 21 15:55 log.47493068._003924.job.log.tgz.1
[2025-11-21 15:57:59] -rw-------. 1 boinc boinc      8626 Nov 21 15:57 heartbeat.json
[2025-11-21 15:57:59] -rw-r--r--. 1 boinc boinc        29 Nov 21 15:57 wrapper_checkpoint.txt
[2025-11-21 15:57:59] -rw-r--r--. 1 boinc boinc      8192 Nov 21 15:57 boinc_mmap_file
[2025-11-21 15:57:59] -rw-------. 1 boinc boinc        95 Nov 21 15:57 pilot_heartbeat.json
[2025-11-21 15:57:59] -rw-------. 1 boinc boinc      4884 Nov 21 15:57 pilotlog.txt
[2025-11-21 15:57:59] -rw-------. 1 boinc boinc  10792773 Nov 21 15:57 log.47493068._003924.job.log.1
[2025-11-21 15:57:59] -rw-------. 1 boinc boinc       353 Nov 21 15:57 output.list
[2025-11-21 15:57:59] -rw-r--r--. 1 boinc boinc       620 Nov 21 15:57 runtime_log
[2025-11-21 15:57:59] -rw-------. 1 boinc boinc  13250560 Nov 21 15:57 result.tar.gz
[2025-11-21 15:57:59] -rw-r--r--. 1 boinc boinc      8703 Nov 21 15:57 runtime_log.err
[2025-11-21 15:57:59] -rw-------. 1 boinc boinc       662 Nov 21 15:57 g7FLDmc5df8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm1uFKDmhUS0To.diag
[2025-11-21 15:57:59] -rw-r--r--. 1 boinc boinc     21497 Nov 21 15:57 stderr.txt
[2025-11-21 15:57:59] HITS file was successfully produced:
[2025-11-21 15:57:59] -rw-------. 1 boinc boinc 907678736 Nov 21 15:53 shared/HITS.pool.root.1
[2025-11-21 15:57:59]  *** Contents of shared directory: ***
[2025-11-21 15:57:59] total 1295940
[2025-11-21 15:57:59] -rw-r--r--. 2 boinc boinc 405497141 Nov 20 17:26 ATLAS.root_0
[2025-11-21 15:57:59] -rw-r--r--. 2 boinc boinc    590098 Nov 20 17:26 input.tar.gz
[2025-11-21 15:57:59] -rw-r--r--. 2 boinc boinc     15120 Nov 20 17:26 start_atlas.sh
[2025-11-21 15:57:59] -rw-------. 1 boinc boinc 907678736 Nov 21 15:53 HITS.pool.root.1
[2025-11-21 15:57:59] -rw-------. 1 boinc boinc  13250560 Nov 21 15:57 result.tar.gz
15:58:01 (27009): run_atlas exited; CPU time 298376.452437
15:58:01 (27009): called boinc_finish(0)

</stderr_txt>
]]>

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