Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
22:07:40 (309): wrapper (7.7.26015): starting
22:07:40 (309): wrapper: running run_atlas (--nthreads 8)
[2025-11-20 22:07:40] Arguments: --nthreads 8
[2025-11-20 22:07:40] Threads: 8
[2025-11-20 22:07:40] Checking for CVMFS
[2025-11-20 22:07:42] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-20 22:07:42] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-20 22:07:42] Running cvmfs_config stat atlas.cern.ch
[2025-11-20 22:07:43] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-20 22:07:43] 2.11.2.0 31060 214346 146044 153088 3 308 15870514 25165824 4227 130560 2 112514583 99.902 41953339 3038 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-20 22:07:43] CVMFS is ok
[2025-11-20 22:07:43] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-20 22:07:43] Checking for apptainer binary...
[2025-11-20 22:07:43] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-20 22:07:43] Running /usr/bin/apptainer --version
[2025-11-20 22:07:44] apptainer version 1.3.2-1.el7
[2025-11-20 22:07:44] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-20 22:08:04] cg-vwn357.simple-grid.lan
[2025-11-20 22:08:04] apptainer works
[2025-11-20 22:08:04] Set ATHENA_PROC_NUMBER=8
[2025-11-20 22:08:04] Set ATHENA_CORE_NUMBER=8
[2025-11-20 22:08:04] Starting ATLAS job with PandaID=6891579400
[2025-11-20 22:08:04] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/16 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-21 23:29:31]  *** The last 200 lines of the pilot log: ***
[2025-11-21 23:29:31] 2025-11-21 22:28:19,418 | INFO     | fitting pss+swap vs Time
[2025-11-21 23:29:31] 2025-11-21 22:28:19,421 | INFO     | sum of square deviations: 1009302531600.3408
[2025-11-21 23:29:31] 2025-11-21 22:28:19,492 | INFO     | sum of deviations: 3123271043964.739
[2025-11-21 23:29:31] 2025-11-21 22:28:19,492 | INFO     | mean x: 1763718782.8097167
[2025-11-21 23:29:31] 2025-11-21 22:28:19,493 | INFO     | mean y: 2872545.101889339
[2025-11-21 23:29:31] 2025-11-21 22:28:19,493 | INFO     | intersect: -5454927897.855468
[2025-11-21 23:29:31] 2025-11-21 22:28:19,495 | INFO     | chi2: 10.241938496625226
[2025-11-21 23:29:31] 2025-11-21 22:28:19,497 | INFO     | sum of square deviations: 999121900144.2343
[2025-11-21 23:29:31] 2025-11-21 22:28:19,566 | INFO     | sum of deviations: 3622223672548.639
[2025-11-21 23:29:31] 2025-11-21 22:28:19,567 | INFO     | mean x: 1763718630.3141503
[2025-11-21 23:29:31] 2025-11-21 22:28:19,567 | INFO     | mean y: 2880018.5050778603
[2025-11-21 23:29:31] 2025-11-21 22:28:19,567 | INFO     | intersect: -6391318100.379829
[2025-11-21 23:29:31] 2025-11-21 22:28:19,569 | INFO     | chi2: 7.082936881997496
[2025-11-21 23:29:31] 2025-11-21 22:28:19,569 | INFO     | current chi2=7.082936881997496 (change=30.843786219460682 %)
[2025-11-21 23:29:31] 2025-11-21 22:28:19,571 | INFO     | sum of square deviations: 989009967650.5696
[2025-11-21 23:29:31] 2025-11-21 22:28:19,636 | INFO     | sum of deviations: 4006177596784.8105
[2025-11-21 23:29:31] 2025-11-21 22:28:19,636 | INFO     | mean x: 1763718477.8186142
[2025-11-21 23:29:31] 2025-11-21 22:28:19,637 | INFO     | mean y: 2885804.868206522
[2025-11-21 23:29:31] 2025-11-21 22:28:19,637 | INFO     | intersect: -7141399575.447364
[2025-11-21 23:29:31] 2025-11-21 22:28:19,639 | INFO     | chi2: 4.909304800194358
[2025-11-21 23:29:31] 2025-11-21 22:28:19,639 | INFO     | current chi2=4.909304800194358 (change=30.688288177857377 %)
[2025-11-21 23:29:31] 2025-11-21 22:28:19,641 | INFO     | sum of square deviations: 978966501556.8463
[2025-11-21 23:29:31] 2025-11-21 22:28:19,707 | INFO     | sum of deviations: 4252868945935.9478
[2025-11-21 23:29:31] 2025-11-21 22:28:19,707 | INFO     | mean x: 1763718325.3231084
[2025-11-21 23:29:31] 2025-11-21 22:28:19,707 | INFO     | mean y: 2889550.1963190185
[2025-11-21 23:29:31] 2025-11-21 22:28:19,707 | INFO     | intersect: -7659132473.250053
[2025-11-21 23:29:31] 2025-11-21 22:28:19,709 | INFO     | chi2: 4.034274257566015
[2025-11-21 23:29:31] 2025-11-21 22:28:19,709 | INFO     | current chi2=4.034274257566015 (change=17.823919643239538 %)
[2025-11-21 23:29:31] 2025-11-21 22:28:19,710 | INFO     | right removable region: 1466
[2025-11-21 23:29:31] 2025-11-21 22:28:19,712 | INFO     | sum of square deviations: 999120716134.2345
[2025-11-21 23:29:31] 2025-11-21 22:28:19,794 | INFO     | sum of deviations: 2598196469013.945
[2025-11-21 23:29:31] 2025-11-21 22:28:19,795 | INFO     | mean x: 1763718935.3141503
[2025-11-21 23:29:31] 2025-11-21 22:28:19,795 | INFO     | mean y: 2880406.739336493
[2025-11-21 23:29:31] 2025-11-21 22:28:19,795 | INFO     | intersect: -4583640757.386531
[2025-11-21 23:29:31] 2025-11-21 22:28:19,797 | INFO     | chi2: 6.921155617112644
[2025-11-21 23:29:31] 2025-11-21 22:28:19,797 | INFO     | current chi2=6.921155617112644 (change=32.42338235683408 %)
[2025-11-21 23:29:31] 2025-11-21 22:28:19,799 | INFO     | sum of square deviations: 989007959781.1078
[2025-11-21 23:29:31] 2025-11-21 22:28:19,882 | INFO     | sum of deviations: 2449784231973.624
[2025-11-21 23:29:31] 2025-11-21 22:28:19,882 | INFO     | mean x: 1763719087.8158967
[2025-11-21 23:29:31] 2025-11-21 22:28:19,882 | INFO     | mean y: 2882643.0502717393
[2025-11-21 23:29:31] 2025-11-21 22:28:19,883 | INFO     | intersect: -4365870073.478495
[2025-11-21 23:29:31] 2025-11-21 22:28:19,884 | INFO     | chi2: 6.658082193527448
[2025-11-21 23:29:31] 2025-11-21 22:28:19,885 | INFO     | current chi2=6.658082193527448 (change=3.8010043140013243 %)
[2025-11-21 23:29:31] 2025-11-21 22:28:19,885 | INFO     | left removable region: 20
[2025-11-21 23:29:31] 2025-11-21 22:28:19,895 | INFO     | sum of square deviations: 937523392785.4663
[2025-11-21 23:29:31] 2025-11-21 22:28:19,964 | INFO     | sum of deviations: 3441757799650.1934
[2025-11-21 23:29:31] 2025-11-21 22:28:19,965 | INFO     | mean x: 1763718904.8284924
[2025-11-21 23:29:31] 2025-11-21 22:28:19,965 | INFO     | mean y: 2902826.4322268325
[2025-11-21 23:29:31] 2025-11-21 22:28:19,965 | INFO     | intersect: -6471915128.828146
[2025-11-21 23:29:31] 2025-11-21 22:28:19,967 | INFO     | chi2: 0.28970338472210466
[2025-11-21 23:29:31] 2025-11-21 22:28:19,967 | INFO     | current memory leak: 3.67 B/s (using 1446 data points, chi2=0.29)
[2025-11-21 23:29:31] 2025-11-21 22:28:19,970 | INFO     | could have reported an average CPU frequency of 1999 MHz (50 samples)
[2025-11-21 23:29:31] 2025-11-21 22:28:19,970 | INFO     | ..............................
[2025-11-21 23:29:31] 2025-11-21 22:28:19,973 | INFO     | . Timing measurements:
[2025-11-21 23:29:31] 2025-11-21 22:28:19,974 | INFO     | . get job = 0 s
[2025-11-21 23:29:31] 2025-11-21 22:28:19,974 | INFO     | . initial setup = 9 s
[2025-11-21 23:29:31] 2025-11-21 22:28:19,974 | INFO     | . payload setup = 161 s
[2025-11-21 23:29:31] 2025-11-21 22:28:19,974 | INFO     | . stage-in = 0 s
[2025-11-21 23:29:31] 2025-11-21 22:28:19,974 | INFO     | . payload execution = 90536 s
[2025-11-21 23:29:31] 2025-11-21 22:28:19,974 | INFO     | . stage-out = 5 s
[2025-11-21 23:29:31] 2025-11-21 22:28:19,974 | INFO     | . log creation = 1 s
[2025-11-21 23:29:31] 2025-11-21 22:28:19,974 | INFO     | ..............................
[2025-11-21 23:29:31] 2025-11-21 22:28:20,357 | INFO     | time since job start (90998s) is within the limit (172800.0s)
[2025-11-21 23:29:31] 2025-11-21 22:28:20,567 | INFO     | 
[2025-11-21 23:29:31] 2025-11-21 22:28:20,568 | INFO     | job summary report
[2025-11-21 23:29:31] 2025-11-21 22:28:20,568 | INFO     | --------------------------------------------------
[2025-11-21 23:29:31] 2025-11-21 22:28:20,568 | INFO     | PanDA job id: 6891579400
[2025-11-21 23:29:31] 2025-11-21 22:28:20,568 | INFO     | task id: 47493068
[2025-11-21 23:29:31] 2025-11-21 22:28:20,568 | INFO     | errors: (none)
[2025-11-21 23:29:31] 2025-11-21 22:28:20,568 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-21 23:29:31] 2025-11-21 22:28:20,568 | INFO     | pilot state: finished 
[2025-11-21 23:29:31] 2025-11-21 22:28:20,568 | INFO     | transexitcode: 0
[2025-11-21 23:29:31] 2025-11-21 22:28:20,568 | INFO     | exeerrorcode: 0
[2025-11-21 23:29:31] 2025-11-21 22:28:20,569 | INFO     | exeerrordiag: 
[2025-11-21 23:29:31] 2025-11-21 22:28:20,569 | INFO     | exitcode: 0
[2025-11-21 23:29:31] 2025-11-21 22:28:20,569 | INFO     | exitmsg: OK
[2025-11-21 23:29:31] 2025-11-21 22:28:20,569 | INFO     | cpuconsumptiontime: 337963 s
[2025-11-21 23:29:31] 2025-11-21 22:28:20,569 | INFO     | nevents: 1000
[2025-11-21 23:29:31] 2025-11-21 22:28:20,569 | INFO     | neventsw: 0
[2025-11-21 23:29:31] 2025-11-21 22:28:20,569 | INFO     | pid: 10774
[2025-11-21 23:29:31] 2025-11-21 22:28:20,569 | INFO     | pgrp: 10774
[2025-11-21 23:29:31] 2025-11-21 22:28:20,569 | INFO     | corecount: 8
[2025-11-21 23:29:31] 2025-11-21 22:28:20,569 | INFO     | event service: False
[2025-11-21 23:29:31] 2025-11-21 22:28:20,569 | INFO     | sizes: {0: 2298626, 1: 2298825, 12: 2298825, 22: 2298853, 33: 2298881, 44: 2298937, 55: 2299093, 66: 2299121, 76: 2299149, 87: 2299205, 97: 2299495, 98: 2299803, 9
[2025-11-21 23:29:31] 2025-11-21 22:28:20,570 | INFO     | --------------------------------------------------
[2025-11-21 23:29:31] 2025-11-21 22:28:20,570 | INFO     | 
[2025-11-21 23:29:31] 2025-11-21 22:28:20,570 | INFO     | executing command: ls -lF /var/lib/boinc/slots/16
[2025-11-21 23:29:31] 2025-11-21 22:28:20,981 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-21 23:29:31] 2025-11-21 22:28:20,982 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-21 23:29:31] 2025-11-21 22:28:20,982 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-21 23:29:31] 2025-11-21 22:28:20,982 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-21 23:29:31] 2025-11-21 22:28:20,982 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-21 23:29:31] 2025-11-21 22:28:20,982 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-21 23:29:31] 2025-11-21 22:28:20,982 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-21 23:29:31] 2025-11-21 22:28:20,982 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-21 23:29:31] 2025-11-21 22:28:20,982 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-21 23:29:31] 2025-11-21 22:28:20,982 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-21 23:29:31] 2025-11-21 22:28:20,982 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-21 23:29:31] 2025-11-21 22:28:20,982 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-21 23:29:31] 2025-11-21 22:28:20,983 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-21 23:29:31] 2025-11-21 22:28:20,983 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-21 23:29:31] 2025-11-21 22:28:20,983 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-21 23:29:31] 2025-11-21 22:28:20,983 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-21 23:29:31] 2025-11-21 22:28:20,983 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-21 23:29:31] 2025-11-21 22:28:20,983 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-21 23:29:31] 2025-11-21 22:28:20,983 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-21 23:29:31] 2025-11-21 22:28:20,983 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-21 23:29:31] 2025-11-21 22:28:20,984 | INFO     | job 6891579400 has completed (purged errors)
[2025-11-21 23:29:31] 2025-11-21 22:28:20,984 | INFO     | overall cleanup function is called
[2025-11-21 23:29:31] 2025-11-21 22:28:22,007 | INFO     | --- collectZombieJob: --- 10, [10774]
[2025-11-21 23:29:31] 2025-11-21 22:28:22,008 | INFO     | zombie collector waiting for pid 10774
[2025-11-21 23:29:31] 2025-11-21 22:28:22,008 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-21 23:29:31] 2025-11-21 22:28:22,008 | INFO     | collected zombie processes
[2025-11-21 23:29:31] 2025-11-21 22:28:22,008 | INFO     | will attempt to kill all subprocesses of pid=10774
[2025-11-21 23:29:31] 2025-11-21 22:28:22,132 | INFO     | process IDs to be killed: [10774] (in reverse order)
[2025-11-21 23:29:31] 2025-11-21 22:28:22,787 | WARNING  | found no corresponding commands to process id(s)
[2025-11-21 23:29:31] 2025-11-21 22:28:22,788 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-21 23:29:31] 2025-11-21 22:28:22,791 | INFO     | did not find any defunct processes belonging to 10774
[2025-11-21 23:29:31] 2025-11-21 22:28:22,794 | INFO     | did not find any defunct processes belonging to 10774
[2025-11-21 23:29:31] 2025-11-21 22:28:22,813 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-21 23:29:31] 2025-11-21 22:28:22,813 | INFO     | ready for new job
[2025-11-21 23:29:31] 2025-11-21 22:28:22,813 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-21 23:29:31] 2025-11-21 22:28:22,820 | INFO     | ***************************************
[2025-11-21 23:29:31] 2025-11-21 22:28:22,820 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-21 23:29:31] 2025-11-21 22:28:22,820 | INFO     | ***************************************
[2025-11-21 23:29:31] 2025-11-21 22:28:22,820 | INFO     | 
[2025-11-21 23:29:31] 2025-11-21 22:28:22,821 | INFO     | pilot is running in a VM
[2025-11-21 23:29:31] 2025-11-21 22:28:22,821 | INFO     | architecture information:
[2025-11-21 23:29:31] 2025-11-21 22:28:22,829 | INFO     | executing command: cat /etc/os-release
[2025-11-21 23:29:31] 2025-11-21 22:28:23,019 | INFO     | cat /etc/os-release:
[2025-11-21 23:29:31] NAME="CentOS Linux"
[2025-11-21 23:29:31] VERSION="7 (Core)"
[2025-11-21 23:29:31] ID="centos"
[2025-11-21 23:29:31] ID_LIKE="rhel fedora"
[2025-11-21 23:29:31] VERSION_ID="7"
[2025-11-21 23:29:31] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-21 23:29:31] ANSI_COLOR="0;31"
[2025-11-21 23:29:31] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-21 23:29:31] HOME_URL="https://www.centos.org/"
[2025-11-21 23:29:31] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-21 23:29:31] 
[2025-11-21 23:29:31] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-21 23:29:31] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-21 23:29:31] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-21 23:29:31] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-21 23:29:31] 
[2025-11-21 23:29:31] 2025-11-21 22:28:23,020 | INFO     | ***************************************
[2025-11-21 23:29:31] 2025-11-21 22:28:23,524 | INFO     | executing command: df -mP /var/lib/boinc/slots/16
[2025-11-21 23:29:31] 2025-11-21 22:28:23,636 | INFO     | sufficient remaining disk space (494825111552 B)
[2025-11-21 23:29:31] 2025-11-21 22:28:23,637 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-21 23:29:31] 2025-11-21 22:28:23,637 | INFO     | current server update state: UPDATING_FINAL
[2025-11-21 23:29:31] 2025-11-21 22:28:23,637 | INFO     | update_server=False
[2025-11-21 23:29:31] 2025-11-21 22:28:23,637 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-21 23:29:31] 2025-11-21 22:28:23,670 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-21 23:29:31] 2025-11-21 22:28:23,671 | INFO     | aborting loop
[2025-11-21 23:29:31] 2025-11-21 22:28:24,217 | INFO     | all data control threads have been joined
[2025-11-21 23:29:31] 2025-11-21 22:28:24,644 | INFO     | [job] retrieve thread has finished
[2025-11-21 23:29:31] 2025-11-21 22:28:24,677 | INFO     | [job] job monitor thread has finished
[2025-11-21 23:29:31] 2025-11-21 22:28:24,792 | INFO     | [payload] validate_post thread has finished
[2025-11-21 23:29:31] 2025-11-21 22:28:24,868 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-21 23:29:31] 2025-11-21 22:28:24,888 | INFO     | [job] create_data_payload thread has finished
[2025-11-21 23:29:31] 2025-11-21 22:28:24,972 | INFO     | [job] validate thread has finished
[2025-11-21 23:29:31] 2025-11-21 22:28:24,995 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-21 23:29:31] 2025-11-21 22:28:25,064 | INFO     | all payload control threads have been joined
[2025-11-21 23:29:31] 2025-11-21 22:28:25,072 | INFO     | [data] copytool_in thread has finished
[2025-11-21 23:29:31] 2025-11-21 22:28:25,144 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-21 23:29:31] 2025-11-21 22:28:25,215 | INFO     | [payload] failed_post thread has finished
[2025-11-21 23:29:31] 2025-11-21 22:28:25,224 | INFO     | [data] control thread has finished
[2025-11-21 23:29:31] 2025-11-21 22:28:25,267 | INFO     | [payload] validate_pre thread has finished
[2025-11-21 23:29:31] 2025-11-21 22:28:25,291 | INFO     | all job control threads have been joined
[2025-11-21 23:29:31] 2025-11-21 22:28:25,414 | INFO     | [payload] execute_payloads thread has finished
[2025-11-21 23:29:31] 2025-11-21 22:28:26,070 | INFO     | [payload] control thread has finished
[2025-11-21 23:29:31] 2025-11-21 22:28:26,150 | INFO     | [job] queue monitor thread has finished
[2025-11-21 23:29:31] 2025-11-21 22:28:26,297 | INFO     | [job] control thread has finished
[2025-11-21 23:29:31] 2025-11-21 22:28:26,362 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-21 23:29:31] 2025-11-21 22:28:27,002 | INFO     | [data] copytool_out thread has finished
[2025-11-21 23:29:31] 2025-11-21 22:28:30,371 | INFO     | [data] queue_monitor thread has finished
[2025-11-21 23:29:31] 2025-11-21 22:28:53,558 | INFO     | PID=4153 has CPU usage=2.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-11-21 23:29:31] 2025-11-21 22:28:53,558 | INFO     | .. there are 9 such processes running
[2025-11-21 23:29:31] 2025-11-21 22:28:53,558 | INFO     | found 0 job(s) in 20 queues
[2025-11-21 23:29:31] 2025-11-21 22:28:53,559 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-21 23:29:31] 2025-11-21 22:28:53,559 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-21 23:29:31] 2025-11-21 22:29:21,018 | INFO     | [monitor] cgroup control has ended
[2025-11-21 23:29:31] 2025-11-21 22:29:21,550 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140432905398080)>', '<ExcThread(monitor, started 140432461780736)>']
[2025-11-21 23:29:31] 2025-11-21 22:29:21,724 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-21 23:29:31] 2025-11-21 22:29:21,725 | INFO     | [monitor] control thread has ended
[2025-11-21 23:29:31] 2025-11-21 22:29:26,575 | INFO     | all workflow threads have been joined
[2025-11-21 23:29:31] 2025-11-21 22:29:26,576 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-21 23:29:31] 2025-11-21 22:29:26,576 | INFO     | traces error code: 0
[2025-11-21 23:29:31] 2025-11-21 22:29:26,576 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-21 23:29:31] 2025-11-21 22:29:26,925 [wrapper] ==== pilot stdout END ====
[2025-11-21 23:29:31] 2025-11-21 22:29:27,018 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-21 23:29:31] 2025-11-21 22:29:27,094 [wrapper] pilotpid: 4153
[2025-11-21 23:29:31] 2025-11-21 22:29:27,163 [wrapper] Pilot exit status: 0
[2025-11-21 23:29:31] 2025-11-21 22:29:27,530 [wrapper] pandaids: 6891579400
[2025-11-21 23:29:31] 2025-11-21 22:29:28,301 [wrapper] cleanup supervisor_pilot 11171 4154
[2025-11-21 23:29:31] 2025-11-21 22:29:28,317 [wrapper] Test setup, not cleaning
[2025-11-21 23:29:31] 2025-11-21 22:29:28,333 [wrapper] apfmon messages muted
[2025-11-21 23:29:31] 2025-11-21 22:29:28,402 [wrapper] ==== wrapper stdout END ====
[2025-11-21 23:29:31] 2025-11-21 22:29:28,424 [wrapper] ==== wrapper stderr END ====
[2025-11-21 23:29:31]  *** Error codes and diagnostics ***
[2025-11-21 23:29:31]     "exeErrorCode": 0,
[2025-11-21 23:29:31]     "exeErrorDiag": "",
[2025-11-21 23:29:31]     "pilotErrorCode": 0,
[2025-11-21 23:29:31]     "pilotErrorDiag": "",
[2025-11-21 23:29:31]  *** Listing of results directory ***
[2025-11-21 23:29:31] total 1328184
[2025-11-21 23:29:31] -rw-r--r--. 1 boinc boinc    576529 Nov 18 17:45 pilot3.tar.gz
[2025-11-21 23:29:31] -rw-r--r--. 1 boinc boinc      5112 Nov 18 17:48 queuedata.json
[2025-11-21 23:29:31] -rwx------. 1 boinc boinc     36292 Nov 18 17:49 runpilot2-wrapper.sh
[2025-11-21 23:29:31] -rw-r--r--. 1 boinc boinc       100 Nov 20 22:07 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-21 23:29:31] -rwxr-xr-x. 1 boinc boinc      7986 Nov 20 22:07 run_atlas
[2025-11-21 23:29:31] -rw-r--r--. 1 boinc boinc       105 Nov 20 22:07 job.xml
[2025-11-21 23:29:31] -rw-r--r--. 1 boinc boinc      6391 Nov 20 22:07 init_data.xml
[2025-11-21 23:29:31] -rw-r--r--. 2 boinc boinc 410370515 Nov 20 22:07 EVNT.47493065._000391.pool.root.1
[2025-11-21 23:29:31] -rw-r--r--. 2 boinc boinc     15120 Nov 20 22:07 start_atlas.sh
[2025-11-21 23:29:31] drwxrwx--x. 2 boinc boinc        68 Nov 20 22:07 shared
[2025-11-21 23:29:31] -rw-r--r--. 2 boinc boinc    590097 Nov 20 22:07 input.tar.gz
[2025-11-21 23:29:31] -rw-r--r--. 1 boinc boinc         0 Nov 20 22:07 boinc_lockfile
[2025-11-21 23:29:31] -rw-r--r--. 1 boinc boinc      2773 Nov 20 22:08 pandaJob.out
[2025-11-21 23:29:31] -rw-------. 1 boinc boinc    989440 Nov 20 22:11 agis_schedconf.cvmfs.json
[2025-11-21 23:29:31] drwx------. 5 boinc boinc      4096 Nov 20 22:11 pilot3
[2025-11-21 23:29:31] -rw-r--r--. 1 boinc boinc       533 Nov 21 23:04 boinc_task_state.xml
[2025-11-21 23:29:31] -rw-------. 1 boinc boinc 916451673 Nov 21 23:25 HITS.47493068._003909.pool.root.1
[2025-11-21 23:29:31] -rw-------. 1 boinc boinc      1033 Nov 21 23:26 memory_monitor_summary.json
[2025-11-21 23:29:31] -rw-------. 1 boinc boinc   1526164 Nov 21 23:26 agis_ddmendpoints.agis.ALL.json
[2025-11-21 23:29:31] -rw-------. 1 boinc boinc   2556541 Nov 21 23:26 log.47493068._003909.job.log.tgz.1
[2025-11-21 23:29:31] -rw-------. 1 boinc boinc      7945 Nov 21 23:28 heartbeat.json
[2025-11-21 23:29:31] -rw-------. 1 boinc boinc        95 Nov 21 23:28 pilot_heartbeat.json
[2025-11-21 23:29:31] -rw-------. 1 boinc boinc      4884 Nov 21 23:29 pilotlog.txt
[2025-11-21 23:29:31] -rw-------. 1 boinc boinc  12104260 Nov 21 23:29 log.47493068._003909.job.log.1
[2025-11-21 23:29:31] -rw-r--r--. 1 boinc boinc        29 Nov 21 23:29 wrapper_checkpoint.txt
[2025-11-21 23:29:31] -rw-r--r--. 1 boinc boinc      8192 Nov 21 23:29 boinc_mmap_file
[2025-11-21 23:29:31] -rw-------. 1 boinc boinc       353 Nov 21 23:29 output.list
[2025-11-21 23:29:31] -rw-r--r--. 1 boinc boinc       620 Nov 21 23:29 runtime_log
[2025-11-21 23:29:31] -rw-------. 1 boinc boinc  14684160 Nov 21 23:29 result.tar.gz
[2025-11-21 23:29:31] -rw-------. 1 boinc boinc       662 Nov 21 23:29 tBSKDme4df8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmruFKDmRnoF4m.diag
[2025-11-21 23:29:31] -rw-r--r--. 1 boinc boinc      8717 Nov 21 23:29 runtime_log.err
[2025-11-21 23:29:31] -rw-r--r--. 1 boinc boinc     20846 Nov 21 23:29 stderr.txt
[2025-11-21 23:29:31] HITS file was successfully produced:
[2025-11-21 23:29:31] -rw-------. 1 boinc boinc 916451673 Nov 21 23:25 shared/HITS.pool.root.1
[2025-11-21 23:29:31]  *** Contents of shared directory: ***
[2025-11-21 23:29:31] total 1310668
[2025-11-21 23:29:31] -rw-r--r--. 2 boinc boinc 410370515 Nov 20 22:07 ATLAS.root_0
[2025-11-21 23:29:31] -rw-r--r--. 2 boinc boinc     15120 Nov 20 22:07 start_atlas.sh
[2025-11-21 23:29:31] -rw-r--r--. 2 boinc boinc    590097 Nov 20 22:07 input.tar.gz
[2025-11-21 23:29:31] -rw-------. 1 boinc boinc 916451673 Nov 21 23:25 HITS.pool.root.1
[2025-11-21 23:29:31] -rw-------. 1 boinc boinc  14684160 Nov 21 23:29 result.tar.gz
23:29:33 (309): run_atlas exited; CPU time 338486.181573
23:29:33 (309): called boinc_finish(0)

</stderr_txt>
]]>

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