Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
21:21:03 (16188): wrapper (7.7.26015): starting
21:21:03 (16188): wrapper: running run_atlas (--nthreads 8)
[2025-11-19 21:21:03] Arguments: --nthreads 8
[2025-11-19 21:21:03] Threads: 8
[2025-11-19 21:21:03] Checking for CVMFS
[2025-11-19 21:21:04] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-19 21:21:04] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-19 21:21:04] Running cvmfs_config stat atlas.cern.ch
[2025-11-19 21:21:04] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-19 21:21:04] 2.11.2.0 30898 275589 138084 153056 3 171 19995398 25165825 3385 130560 4 124852576 99.876 74755967 3206 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-19 21:21:04] CVMFS is ok
[2025-11-19 21:21:04] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-19 21:21:04] Checking for apptainer binary...
[2025-11-19 21:21:04] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-19 21:21:04] Running /usr/bin/apptainer --version
[2025-11-19 21:21:05] apptainer version 1.3.2-1.el7
[2025-11-19 21:21:05] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-19 21:21:06] cg-vwn285.simple-grid.lan
[2025-11-19 21:21:06] apptainer works
[2025-11-19 21:21:06] Set ATHENA_PROC_NUMBER=8
[2025-11-19 21:21:06] Set ATHENA_CORE_NUMBER=8
[2025-11-19 21:21:06] Starting ATLAS job with PandaID=6891577916
[2025-11-19 21:21:06] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/18 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-20 22:03:15]  *** The last 200 lines of the pilot log: ***
[2025-11-20 22:03:15] 2025-11-20 21:02:31,830 | INFO     | time since job start (88858s) is within the limit (172800.0s)
[2025-11-20 22:03:15] 2025-11-20 21:02:33,082 | INFO     | monitor loop #5882: job 0:6891577916 is in state 'finished'
[2025-11-20 22:03:15] 2025-11-20 21:02:33,083 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-20 22:03:15] 2025-11-20 21:02:33,838 | INFO     | time since job start (88860s) is within the limit (172800.0s)
[2025-11-20 22:03:15] 2025-11-20 21:02:34,985 | INFO     | PID=19940 has CPU usage=15.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-20 22:03:15] 2025-11-20 21:02:34,986 | INFO     | .. there are 8 such processes running
[2025-11-20 22:03:15] 2025-11-20 21:02:35,587 | INFO     | monitor loop #5883: job 0:6891577916 is in state 'finished'
[2025-11-20 22:03:15] 2025-11-20 21:02:35,588 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-20 22:03:15] 2025-11-20 21:02:35,986 | INFO     | time since job start (88862s) is within the limit (172800.0s)
[2025-11-20 22:03:15] 2025-11-20 21:02:37,995 | INFO     | time since job start (88864s) is within the limit (172800.0s)
[2025-11-20 22:03:15] 2025-11-20 21:02:38,096 | INFO     | monitor loop #5884: job 0:6891577916 is in state 'finished'
[2025-11-20 22:03:15] 2025-11-20 21:02:38,097 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-20 22:03:15] 2025-11-20 21:02:40,001 | INFO     | time since job start (88867s) is within the limit (172800.0s)
[2025-11-20 22:03:15] 2025-11-20 21:02:40,604 | INFO     | monitor loop #5885: job 0:6891577916 is in state 'finished'
[2025-11-20 22:03:15] 2025-11-20 21:02:40,605 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-20 22:03:15] 2025-11-20 21:02:42,008 | INFO     | time since job start (88869s) is within the limit (172800.0s)
[2025-11-20 22:03:15] 2025-11-20 21:02:42,524 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-20 22:03:15] 2025-11-20 21:02:42,525 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-11-20 22:03:15] 2025-11-20 21:02:42,526 | INFO     | using path: /var/lib/boinc/slots/18/PanDA_Pilot-6891577916/memory_monitor_summary.json (trf name=prmon)
[2025-11-20 22:03:15] 2025-11-20 21:02:42,527 | INFO     | extracted standard info from prmon json
[2025-11-20 22:03:15] 2025-11-20 21:02:42,527 | INFO     | extracted standard memory fields from prmon json
[2025-11-20 22:03:15] 2025-11-20 21:02:42,527 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-20 22:03:15] 2025-11-20 21:02:42,554 | INFO     | fitting pss+swap vs Time
[2025-11-20 22:03:15] 2025-11-20 21:02:42,556 | INFO     | sum of square deviations: 955140566180.8005
[2025-11-20 22:03:15] 2025-11-20 21:02:42,620 | INFO     | sum of deviations: 2515584655599.406
[2025-11-20 22:03:15] 2025-11-20 21:02:42,621 | INFO     | mean x: 1763628131.2
[2025-11-20 22:03:15] 2025-11-20 21:02:42,621 | INFO     | mean y: 2858011.874914089
[2025-11-20 22:03:15] 2025-11-20 21:02:42,621 | INFO     | intersect: -4642066538.623521
[2025-11-20 22:03:15] 2025-11-20 21:02:42,623 | INFO     | chi2: 15.205100185415958
[2025-11-20 22:03:15] 2025-11-20 21:02:42,625 | INFO     | sum of square deviations: 945328086806.0737
[2025-11-20 22:03:15] 2025-11-20 21:02:42,681 | INFO     | sum of deviations: 2986139579675.598
[2025-11-20 22:03:15] 2025-11-20 21:02:42,681 | INFO     | mean x: 1763627978.704138
[2025-11-20 22:03:15] 2025-11-20 21:02:42,681 | INFO     | mean y: 2865325.768275862
[2025-11-20 22:03:15] 2025-11-20 21:02:42,681 | INFO     | intersect: -5568152170.205126
[2025-11-20 22:03:15] 2025-11-20 21:02:42,683 | INFO     | chi2: 12.160196372512852
[2025-11-20 22:03:15] 2025-11-20 21:02:42,683 | INFO     | current chi2=12.160196372512852 (change=20.025542586188546 %)
[2025-11-20 22:03:15] 2025-11-20 21:02:42,683 | INFO     | right removable region: 1449
[2025-11-20 22:03:15] 2025-11-20 21:02:42,685 | INFO     | sum of square deviations: 945327021746.0757
[2025-11-20 22:03:15] 2025-11-20 21:02:42,742 | INFO     | sum of deviations: 2035661398842.2583
[2025-11-20 22:03:15] 2025-11-20 21:02:42,742 | INFO     | mean x: 1763628283.704138
[2025-11-20 22:03:15] 2025-11-20 21:02:42,742 | INFO     | mean y: 2865467.2406896553
[2025-11-20 22:03:15] 2025-11-20 21:02:42,742 | INFO     | intersect: -3794920839.9905524
[2025-11-20 22:03:15] 2025-11-20 21:02:42,744 | INFO     | chi2: 12.374626851726973
[2025-11-20 22:03:15] 2025-11-20 21:02:42,744 | INFO     | current chi2=12.374626851726973 (change=18.61528894366541 %)
[2025-11-20 22:03:15] 2025-11-20 21:02:42,745 | INFO     | left removable region: 10
[2025-11-20 22:03:15] 2025-11-20 21:02:42,747 | INFO     | sum of square deviations: 923976014716.6195
[2025-11-20 22:03:15] 2025-11-20 21:02:42,800 | INFO     | sum of deviations: 2467712824994.0464
[2025-11-20 22:03:15] 2025-11-20 21:02:42,801 | INFO     | mean x: 1763628253.209868
[2025-11-20 22:03:15] 2025-11-20 21:02:42,801 | INFO     | mean y: 2877001.6025017374
[2025-11-20 22:03:15] 2025-11-20 21:02:42,801 | INFO     | intersect: -4707340568.604256
[2025-11-20 22:03:15] 2025-11-20 21:02:42,803 | INFO     | chi2: 8.16878456934461
[2025-11-20 22:03:15] 2025-11-20 21:02:42,803 | INFO     | current memory leak: 2.67 B/s (using 1439 data points, chi2=8.17)
[2025-11-20 22:03:15] 2025-11-20 21:02:42,805 | INFO     | could have reported an average CPU frequency of 1999 MHz (49 samples)
[2025-11-20 22:03:15] 2025-11-20 21:02:42,805 | INFO     | ..............................
[2025-11-20 22:03:15] 2025-11-20 21:02:42,806 | INFO     | . Timing measurements:
[2025-11-20 22:03:15] 2025-11-20 21:02:42,806 | INFO     | . get job = 0 s
[2025-11-20 22:03:15] 2025-11-20 21:02:42,806 | INFO     | . initial setup = 3 s
[2025-11-20 22:03:15] 2025-11-20 21:02:42,806 | INFO     | . payload setup = 19 s
[2025-11-20 22:03:15] 2025-11-20 21:02:42,806 | INFO     | . stage-in = 0 s
[2025-11-20 22:03:15] 2025-11-20 21:02:42,806 | INFO     | . payload execution = 88803 s
[2025-11-20 22:03:15] 2025-11-20 21:02:42,806 | INFO     | . stage-out = 4 s
[2025-11-20 22:03:15] 2025-11-20 21:02:42,806 | INFO     | . log creation = 1 s
[2025-11-20 22:03:15] 2025-11-20 21:02:42,806 | INFO     | ..............................
[2025-11-20 22:03:15] 2025-11-20 21:02:42,923 | INFO     | 
[2025-11-20 22:03:15] 2025-11-20 21:02:42,923 | INFO     | job summary report
[2025-11-20 22:03:15] 2025-11-20 21:02:42,923 | INFO     | --------------------------------------------------
[2025-11-20 22:03:15] 2025-11-20 21:02:42,924 | INFO     | PanDA job id: 6891577916
[2025-11-20 22:03:15] 2025-11-20 21:02:42,924 | INFO     | task id: 47493068
[2025-11-20 22:03:15] 2025-11-20 21:02:42,924 | INFO     | errors: (none)
[2025-11-20 22:03:15] 2025-11-20 21:02:42,924 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-20 22:03:15] 2025-11-20 21:02:42,924 | INFO     | pilot state: finished 
[2025-11-20 22:03:15] 2025-11-20 21:02:42,924 | INFO     | transexitcode: 0
[2025-11-20 22:03:15] 2025-11-20 21:02:42,924 | INFO     | exeerrorcode: 0
[2025-11-20 22:03:15] 2025-11-20 21:02:42,924 | INFO     | exeerrordiag: 
[2025-11-20 22:03:15] 2025-11-20 21:02:42,924 | INFO     | exitcode: 0
[2025-11-20 22:03:15] 2025-11-20 21:02:42,924 | INFO     | exitmsg: OK
[2025-11-20 22:03:15] 2025-11-20 21:02:42,924 | INFO     | cpuconsumptiontime: 331345 s
[2025-11-20 22:03:15] 2025-11-20 21:02:42,924 | INFO     | nevents: 1000
[2025-11-20 22:03:15] 2025-11-20 21:02:42,925 | INFO     | neventsw: 0
[2025-11-20 22:03:15] 2025-11-20 21:02:42,925 | INFO     | pid: 27589
[2025-11-20 22:03:15] 2025-11-20 21:02:42,925 | INFO     | pgrp: 27589
[2025-11-20 22:03:15] 2025-11-20 21:02:42,925 | INFO     | corecount: 8
[2025-11-20 22:03:15] 2025-11-20 21:02:42,925 | INFO     | event service: False
[2025-11-20 22:03:15] 2025-11-20 21:02:42,925 | INFO     | sizes: {0: 2297087, 1: 2297229, 10: 2297491, 12: 2297519, 88826: 2359358, 88827: 2359357, 88831: 2370189, 88848: 2370379}
[2025-11-20 22:03:15] 2025-11-20 21:02:42,925 | INFO     | --------------------------------------------------
[2025-11-20 22:03:15] 2025-11-20 21:02:42,925 | INFO     | 
[2025-11-20 22:03:15] 2025-11-20 21:02:42,925 | INFO     | executing command: ls -lF /var/lib/boinc/slots/18
[2025-11-20 22:03:15] 2025-11-20 21:02:42,964 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-20 22:03:15] 2025-11-20 21:02:42,965 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-20 22:03:15] 2025-11-20 21:02:42,965 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-20 22:03:15] 2025-11-20 21:02:42,965 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-20 22:03:15] 2025-11-20 21:02:42,965 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-20 22:03:15] 2025-11-20 21:02:42,965 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-20 22:03:15] 2025-11-20 21:02:42,965 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-20 22:03:15] 2025-11-20 21:02:42,965 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-20 22:03:15] 2025-11-20 21:02:42,965 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-20 22:03:15] 2025-11-20 21:02:42,966 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-20 22:03:15] 2025-11-20 21:02:42,966 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-20 22:03:15] 2025-11-20 21:02:42,966 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-20 22:03:15] 2025-11-20 21:02:42,966 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-20 22:03:15] 2025-11-20 21:02:42,966 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-20 22:03:15] 2025-11-20 21:02:42,966 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-20 22:03:15] 2025-11-20 21:02:42,966 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-20 22:03:15] 2025-11-20 21:02:42,966 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-20 22:03:15] 2025-11-20 21:02:42,966 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-20 22:03:15] 2025-11-20 21:02:42,966 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-20 22:03:15] 2025-11-20 21:02:42,967 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-20 22:03:15] 2025-11-20 21:02:42,967 | INFO     | job 6891577916 has completed (purged errors)
[2025-11-20 22:03:15] 2025-11-20 21:02:42,967 | INFO     | overall cleanup function is called
[2025-11-20 22:03:15] 2025-11-20 21:02:43,985 | INFO     | --- collectZombieJob: --- 10, [27589]
[2025-11-20 22:03:15] 2025-11-20 21:02:43,985 | INFO     | zombie collector waiting for pid 27589
[2025-11-20 22:03:15] 2025-11-20 21:02:43,986 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-20 22:03:15] 2025-11-20 21:02:43,986 | INFO     | collected zombie processes
[2025-11-20 22:03:15] 2025-11-20 21:02:43,986 | INFO     | will attempt to kill all subprocesses of pid=27589
[2025-11-20 22:03:15] 2025-11-20 21:02:44,076 | INFO     | process IDs to be killed: [27589] (in reverse order)
[2025-11-20 22:03:15] 2025-11-20 21:02:44,147 | WARNING  | found no corresponding commands to process id(s)
[2025-11-20 22:03:15] 2025-11-20 21:02:44,147 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-20 22:03:15] 2025-11-20 21:02:44,151 | INFO     | did not find any defunct processes belonging to 27589
[2025-11-20 22:03:15] 2025-11-20 21:02:44,154 | INFO     | did not find any defunct processes belonging to 27589
[2025-11-20 22:03:15] 2025-11-20 21:02:44,156 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-20 22:03:15] 2025-11-20 21:02:44,156 | INFO     | ready for new job
[2025-11-20 22:03:15] 2025-11-20 21:02:44,157 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-20 22:03:15] 2025-11-20 21:02:44,163 | INFO     | ***************************************
[2025-11-20 22:03:15] 2025-11-20 21:02:44,163 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-20 22:03:15] 2025-11-20 21:02:44,163 | INFO     | ***************************************
[2025-11-20 22:03:15] 2025-11-20 21:02:44,163 | INFO     | 
[2025-11-20 22:03:15] 2025-11-20 21:02:44,164 | INFO     | pilot is running in a VM
[2025-11-20 22:03:15] 2025-11-20 21:02:44,164 | INFO     | architecture information:
[2025-11-20 22:03:15] 2025-11-20 21:02:44,164 | INFO     | executing command: cat /etc/os-release
[2025-11-20 22:03:15] 2025-11-20 21:02:44,183 | INFO     | cat /etc/os-release:
[2025-11-20 22:03:15] NAME="CentOS Linux"
[2025-11-20 22:03:15] VERSION="7 (Core)"
[2025-11-20 22:03:15] ID="centos"
[2025-11-20 22:03:15] ID_LIKE="rhel fedora"
[2025-11-20 22:03:15] VERSION_ID="7"
[2025-11-20 22:03:15] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-20 22:03:15] ANSI_COLOR="0;31"
[2025-11-20 22:03:15] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-20 22:03:15] HOME_URL="https://www.centos.org/"
[2025-11-20 22:03:15] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-20 22:03:15] 
[2025-11-20 22:03:15] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-20 22:03:15] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-20 22:03:15] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-20 22:03:15] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-20 22:03:15] 
[2025-11-20 22:03:15] 2025-11-20 21:02:44,184 | INFO     | ***************************************
[2025-11-20 22:03:15] 2025-11-20 21:02:44,686 | INFO     | executing command: df -mP /var/lib/boinc/slots/18
[2025-11-20 22:03:15] 2025-11-20 21:02:44,742 | INFO     | sufficient remaining disk space (495160655872 B)
[2025-11-20 22:03:15] 2025-11-20 21:02:44,743 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-20 22:03:15] 2025-11-20 21:02:44,743 | INFO     | current server update state: UPDATING_FINAL
[2025-11-20 22:03:15] 2025-11-20 21:02:44,743 | INFO     | update_server=False
[2025-11-20 22:03:15] 2025-11-20 21:02:44,743 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-20 22:03:15] 2025-11-20 21:02:44,743 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-20 22:03:15] 2025-11-20 21:02:44,744 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-20 22:03:15] 2025-11-20 21:02:44,744 | INFO     | aborting loop
[2025-11-20 22:03:15] 2025-11-20 21:02:44,744 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-20 22:03:15] 2025-11-20 21:02:45,304 | INFO     | all data control threads have been joined
[2025-11-20 22:03:15] 2025-11-20 21:02:45,749 | INFO     | [job] job monitor thread has finished
[2025-11-20 22:03:15] 2025-11-20 21:02:45,750 | INFO     | [job] retrieve thread has finished
[2025-11-20 22:03:15] 2025-11-20 21:02:45,751 | INFO     | [job] queue monitor thread has finished
[2025-11-20 22:03:15] 2025-11-20 21:02:45,855 | INFO     | all job control threads have been joined
[2025-11-20 22:03:15] 2025-11-20 21:02:45,952 | INFO     | [job] create_data_payload thread has finished
[2025-11-20 22:03:15] 2025-11-20 21:02:45,984 | INFO     | [payload] failed_post thread has finished
[2025-11-20 22:03:15] 2025-11-20 21:02:46,068 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-20 22:03:15] 2025-11-20 21:02:46,100 | INFO     | all payload control threads have been joined
[2025-11-20 22:03:15] 2025-11-20 21:02:46,215 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-20 22:03:15] 2025-11-20 21:02:46,310 | INFO     | [data] control thread has finished
[2025-11-20 22:03:15] 2025-11-20 21:02:46,590 | INFO     | [payload] execute_payloads thread has finished
[2025-11-20 22:03:15] 2025-11-20 21:02:46,649 | INFO     | [job] validate thread has finished
[2025-11-20 22:03:15] 2025-11-20 21:02:46,750 | INFO     | [data] copytool_out thread has finished
[2025-11-20 22:03:15] 2025-11-20 21:02:46,791 | INFO     | [payload] validate_post thread has finished
[2025-11-20 22:03:15] 2025-11-20 21:02:46,861 | INFO     | [job] control thread has finished
[2025-11-20 22:03:15] 2025-11-20 21:02:47,106 | INFO     | [payload] control thread has finished
[2025-11-20 22:03:15] 2025-11-20 21:02:47,233 | INFO     | [data] copytool_in thread has finished
[2025-11-20 22:03:15] 2025-11-20 21:02:47,246 | INFO     | [payload] validate_pre thread has finished
[2025-11-20 22:03:15] 2025-11-20 21:02:50,076 | INFO     | [data] queue_monitor thread has finished
[2025-11-20 22:03:15] 2025-11-20 21:03:08,485 | INFO     | [monitor] cgroup control has ended
[2025-11-20 22:03:15] 2025-11-20 21:03:09,154 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140663339767616)>', '<ExcThread(monitor, started 140662880048896)>']
[2025-11-20 22:03:15] 2025-11-20 21:03:14,180 | INFO     | all workflow threads have been joined
[2025-11-20 22:03:15] 2025-11-20 21:03:14,180 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-20 22:03:15] 2025-11-20 21:03:14,180 | INFO     | traces error code: 0
[2025-11-20 22:03:15] 2025-11-20 21:03:14,181 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-20 22:03:15] 2025-11-20 21:03:15,145 | INFO     | PID=19940 has CPU usage=1.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-20 22:03:15] 2025-11-20 21:03:15,145 | INFO     | .. there are 9 such processes running
[2025-11-20 22:03:15] 2025-11-20 21:03:15,147 | INFO     | found 0 job(s) in 20 queues
[2025-11-20 22:03:15] 2025-11-20 21:03:15,147 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-20 22:03:15] 2025-11-20 21:03:15,147 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-20 22:03:15] 2025-11-20 21:03:15,148 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-20 22:03:15] 2025-11-20 21:03:15,148 | INFO     | [monitor] control thread has ended
[2025-11-20 22:03:15] 2025-11-20 21:03:15,389 [wrapper] ==== pilot stdout END ====
[2025-11-20 22:03:15] 2025-11-20 21:03:15,402 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-20 22:03:15] 2025-11-20 21:03:15,407 [wrapper] pilotpid: 19940
[2025-11-20 22:03:15] 2025-11-20 21:03:15,410 [wrapper] Pilot exit status: 0
[2025-11-20 22:03:15] 2025-11-20 21:03:15,468 [wrapper] pandaids: 6891577916
[2025-11-20 22:03:15] 2025-11-20 21:03:15,514 [wrapper] cleanup supervisor_pilot 21851 19941
[2025-11-20 22:03:15] 2025-11-20 21:03:15,542 [wrapper] Test setup, not cleaning
[2025-11-20 22:03:15] 2025-11-20 21:03:15,554 [wrapper] apfmon messages muted
[2025-11-20 22:03:15] 2025-11-20 21:03:15,562 [wrapper] ==== wrapper stdout END ====
[2025-11-20 22:03:15] 2025-11-20 21:03:15,569 [wrapper] ==== wrapper stderr END ====
[2025-11-20 22:03:15]  *** Error codes and diagnostics ***
[2025-11-20 22:03:15]     "exeErrorCode": 0,
[2025-11-20 22:03:15]     "exeErrorDiag": "",
[2025-11-20 22:03:15]     "pilotErrorCode": 0,
[2025-11-20 22:03:15]     "pilotErrorDiag": "",
[2025-11-20 22:03:15]  *** Listing of results directory ***
[2025-11-20 22:03:15] total 1312012
[2025-11-20 22:03:15] -rw-r--r--. 1 boinc boinc    576529 Nov 18 17:45 pilot3.tar.gz
[2025-11-20 22:03:15] -rw-r--r--. 1 boinc boinc      5112 Nov 18 17:48 queuedata.json
[2025-11-20 22:03:15] -rwx------. 1 boinc boinc     36292 Nov 18 17:49 runpilot2-wrapper.sh
[2025-11-20 22:03:15] -rw-r--r--. 1 boinc boinc       100 Nov 19 21:21 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-20 22:03:15] -rwxr-xr-x. 1 boinc boinc      7986 Nov 19 21:21 run_atlas
[2025-11-20 22:03:15] -rw-r--r--. 1 boinc boinc       105 Nov 19 21:21 job.xml
[2025-11-20 22:03:15] -rw-r--r--. 2 boinc boinc 410438270 Nov 19 21:21 EVNT.47493065._000387.pool.root.1
[2025-11-20 22:03:15] drwxrwx--x. 2 boinc boinc        68 Nov 19 21:21 shared
[2025-11-20 22:03:15] -rw-r--r--. 2 boinc boinc    590097 Nov 19 21:21 input.tar.gz
[2025-11-20 22:03:15] -rw-r--r--. 1 boinc boinc      6389 Nov 19 21:21 init_data.xml
[2025-11-20 22:03:15] -rw-r--r--. 2 boinc boinc     15120 Nov 19 21:21 start_atlas.sh
[2025-11-20 22:03:15] -rw-r--r--. 1 boinc boinc         0 Nov 19 21:21 boinc_lockfile
[2025-11-20 22:03:15] -rw-r--r--. 1 boinc boinc      2773 Nov 19 21:21 pandaJob.out
[2025-11-20 22:03:15] -rw-------. 1 boinc boinc    989443 Nov 19 21:21 agis_schedconf.cvmfs.json
[2025-11-20 22:03:15] drwx------. 5 boinc boinc      4096 Nov 19 21:21 pilot3
[2025-11-20 22:03:15] -rw-r--r--. 1 boinc boinc       533 Nov 20 21:38 boinc_task_state.xml
[2025-11-20 22:03:15] -rw-------. 1 boinc boinc 900467437 Nov 20 22:01 HITS.47493068._003870.pool.root.1
[2025-11-20 22:03:15] -rw-------. 1 boinc boinc      1032 Nov 20 22:02 memory_monitor_summary.json
[2025-11-20 22:03:15] -rw-------. 1 boinc boinc   1526164 Nov 20 22:02 agis_ddmendpoints.agis.ALL.json
[2025-11-20 22:03:15] -rw-------. 1 boinc boinc   2526245 Nov 20 22:02 log.47493068._003870.job.log.tgz.1
[2025-11-20 22:03:15] -rw-------. 1 boinc boinc      7941 Nov 20 22:02 heartbeat.json
[2025-11-20 22:03:15] -rw-r--r--. 1 boinc boinc      8192 Nov 20 22:02 boinc_mmap_file
[2025-11-20 22:03:15] -rw-r--r--. 1 boinc boinc        29 Nov 20 22:02 wrapper_checkpoint.txt
[2025-11-20 22:03:15] -rw-------. 1 boinc boinc        95 Nov 20 22:03 pilot_heartbeat.json
[2025-11-20 22:03:15] -rw-------. 1 boinc boinc       820 Nov 20 22:03 pilotlog.txt
[2025-11-20 22:03:15] -rw-------. 1 boinc boinc  11820730 Nov 20 22:03 log.47493068._003870.job.log.1
[2025-11-20 22:03:15] -rw-------. 1 boinc boinc       353 Nov 20 22:03 output.list
[2025-11-20 22:03:15] -rw-r--r--. 1 boinc boinc       620 Nov 20 22:03 runtime_log
[2025-11-20 22:03:15] -rw-------. 1 boinc boinc  14366720 Nov 20 22:03 result.tar.gz
[2025-11-20 22:03:15] -rw-------. 1 boinc boinc       662 Nov 20 22:03 U55LDmd4df8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmIuFKDmaCuysm.diag
[2025-11-20 22:03:15] -rw-r--r--. 1 boinc boinc      8717 Nov 20 22:03 runtime_log.err
[2025-11-20 22:03:15] -rw-r--r--. 1 boinc boinc     21457 Nov 20 22:03 stderr.txt
[2025-11-20 22:03:15] HITS file was successfully produced:
[2025-11-20 22:03:15] -rw-------. 1 boinc boinc 900467437 Nov 20 22:01 shared/HITS.pool.root.1
[2025-11-20 22:03:15]  *** Contents of shared directory: ***
[2025-11-20 22:03:15] total 1294812
[2025-11-20 22:03:15] -rw-r--r--. 2 boinc boinc 410438270 Nov 19 21:21 ATLAS.root_0
[2025-11-20 22:03:15] -rw-r--r--. 2 boinc boinc    590097 Nov 19 21:21 input.tar.gz
[2025-11-20 22:03:15] -rw-r--r--. 2 boinc boinc     15120 Nov 19 21:21 start_atlas.sh
[2025-11-20 22:03:15] -rw-------. 1 boinc boinc 900467437 Nov 20 22:01 HITS.pool.root.1
[2025-11-20 22:03:15] -rw-------. 1 boinc boinc  14366720 Nov 20 22:03 result.tar.gz
22:03:17 (16188): run_atlas exited; CPU time 331884.097264
22:03:17 (16188): called boinc_finish(0)

</stderr_txt>
]]>

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