Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
10:21:09 (1227079): wrapper (7.7.26015): starting
10:21:09 (1227079): wrapper: running run_atlas (--nthreads 12)
[2025-11-18 10:21:09] Arguments: --nthreads 12
[2025-11-18 10:21:09] Threads: 12
[2025-11-18 10:21:09] Checking for CVMFS
[2025-11-18 10:21:10] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-18 10:21:10] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-18 10:21:10] Running cvmfs_config stat atlas.cern.ch
[2025-11-18 10:21:10] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-18 10:21:10] 2.11.5.0 1674450 17087 214108 153009 3 322 32213327 45568000 8273 130560 0 149772531 99.766 99000970 24768 http://cvmfs-s1bnl.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.164:3129 1
[2025-11-18 10:21:10] CVMFS is ok
[2025-11-18 10:21:10] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-18 10:21:10] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-18 10:21:10] Further information can be found at the LHC@home message board.
[2025-11-18 10:21:10] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-18 10:21:10] Checking for apptainer binary...
[2025-11-18 10:21:10] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-18 10:21:10] Running /usr/bin/apptainer --version
[2025-11-18 10:21:10] apptainer version 1.4.1-1.el9
[2025-11-18 10:21:10] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-18 10:21:10] wns0069.triumf.lcg
[2025-11-18 10:21:10] apptainer works
[2025-11-18 10:21:10] Set ATHENA_PROC_NUMBER=12
[2025-11-18 10:21:10] Set ATHENA_CORE_NUMBER=12
[2025-11-18 10:21:10] Starting ATLAS job with PandaID=6891579447
[2025-11-18 10:21:10] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-18 10:26:37]  *** The last 200 lines of the pilot log: ***
[2025-11-18 10:26:37] 2025-11-18 18:25:55,148 | WARNING  | wrong length of table data, x=[1763490139.0, 1763490200.0], y=[1072.0, 464064.0] (must be same and length>=4)
[2025-11-18 10:26:37] 2025-11-18 18:25:55,148 | INFO     | could have reported an average CPU frequency of 2644 MHz (4 samples)
[2025-11-18 10:26:37] 2025-11-18 18:25:55,149 | INFO     | ..............................
[2025-11-18 10:26:37] 2025-11-18 18:25:55,149 | INFO     | . Timing measurements:
[2025-11-18 10:26:37] 2025-11-18 18:25:55,149 | INFO     | . get job = 0 s
[2025-11-18 10:26:37] 2025-11-18 18:25:55,149 | INFO     | . initial setup = 3 s
[2025-11-18 10:26:37] 2025-11-18 18:25:55,149 | INFO     | . payload setup = 11 s
[2025-11-18 10:26:37] 2025-11-18 18:25:55,149 | INFO     | . stage-in = 0 s
[2025-11-18 10:26:37] 2025-11-18 18:25:55,149 | INFO     | . payload execution = 96 s
[2025-11-18 10:26:37] 2025-11-18 18:25:55,149 | INFO     | . stage-out = 0 s
[2025-11-18 10:26:37] 2025-11-18 18:25:55,149 | INFO     | . log creation = 0 s
[2025-11-18 10:26:37] 2025-11-18 18:25:55,149 | INFO     | ..............................
[2025-11-18 10:26:37] 2025-11-18 18:25:55,149 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-18 10:26:37] 2025-11-18 18:25:55,150 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6891579447/pilotlog.txt
[2025-11-18 10:26:37] 2025-11-18 18:25:55,161 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2025-11-18 10:26:37] - Log from pilotlog.txt -
[2025-11-18 10:26:37] 2025-11-18 18:25:55,145 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6891579447/memory_monitor_summary.json (trf name=prmon)
[2025-11-18 10:26:37] 2025-11-18 18:25:55,146 | INFO     | extracted standard info from prmon json
[2025-11-18 10:26:37] 2025-11-18 18:25:55,146 | INFO     | extracted standard memory fields from prmon json
[2025-11-18 10:26:37] 2025-11-18 18:25:55,146 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-18 10:26:37] 2025-11-18 18:25:55,147 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-18 10:26:37] 2025-11-18 18:25:55,147 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-18 10:26:37] 2025-11-18 18:25:55,148 | WARNING  | wrong length of table data, x=[1763490139.0, 1763490200.0], y=[1072.0, 464064.0] (must be same and length>=4)
[2025-11-18 10:26:37] 2025-11-18 18:25:55,148 | INFO     | could have reported an average CPU frequency of 2644 MHz (4 samples)
[2025-11-18 10:26:37] 2025-11-18 18:25:55,149 | INFO     | ..............................
[2025-11-18 10:26:37] 2025-11-18 18:25:55,149 | INFO     | . Timing measurements:
[2025-11-18 10:26:37] 2025-11-18 18:25:55,149 | INFO     | . get job = 0 s
[2025-11-18 10:26:37] 2025-11-18 18:25:55,149 | INFO     | . initial setup = 3 s
[2025-11-18 10:26:37] 2025-11-18 18:25:55,149 | INFO     | . payload setup = 11 s
[2025-11-18 10:26:37] 2025-11-18 18:25:55,149 | INFO     | . stage-in = 0 s
[2025-11-18 10:26:37] 2025-11-18 18:25:55,149 | INFO     | . payload execution = 96 s
[2025-11-18 10:26:37] 2025-11-18 18:25:55,149 | INFO     | . stage-out = 0 s
[2025-11-18 10:26:37] 2025-11-18 18:25:55,149 | INFO     | . log creation = 0 s
[2025-11-18 10:26:37] 2025-11-18 18:25:55,149 | INFO     | ..............................
[2025-11-18 10:26:37] 2025-11-18 18:25:55,149 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-18 10:26:37] 2025-11-18 18:25:55,150 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6891579447/pilotlog.txt
[2025-11-18 10:26:37] 2025-11-18 18:25:55,161 | WARNING  | 
[2025-11-18 10:26:37] [begin log extracts]
[2025-11-18 10:26:37] - Log from pilotlog.txt -
[2025-11-18 10:26:37] 2025-11-18 18:25:55,145 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6891579447/memory_monitor_summary.json (trf name=prmon)
[2025-11-18 10:26:37] 2025-11-18 18:25:55,146 | INFO     | extracted standard info from prmon json
[2025-11-18 10:26:37] 2025-11-18 18:25:55,146 | INFO     | extracted standard memory fields from prmon json
[2025-11-18 10:26:37] 2025-11-18 18:25:55,146 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-18 10:26:37] 2025-11-18 18:25:55,147 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-18 10:26:37] 2025-11-18 18:25:55,147 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-18 10:26:37] 2025-11-18 18:25:55,148 | WARNING  | wrong length of table data, x=[1763490139.0, 1763490200.0], y=[1072.0, 464064.0] (must be same and length>=4)
[2025-11-18 10:26:37] 2025-11-18 18:25:55,148 | INFO     | could have reported an average CPU frequency of 2644 MHz (4 samples)
[2025-11-18 10:26:37] 2025-11-18 18:25:55,149 | INFO     | ..............................
[2025-11-18 10:26:37] 2025-11-18 18:25:55,149 | INFO     | . Timing measurements:
[2025-11-18 10:26:37] 2025-11-18 18:25:55,149 | INFO     | . get job = 0 s
[2025-11-18 10:26:37] 2025-11-18 18:25:55,149 | INFO     | . initial setup = 3 s
[2025-11-18 10:26:37] 2025-11-18 18:25:55,149 | INFO     | . payload setup = 11 s
[2025-11-18 10:26:37] 2025-11-18 18:25:55,149 | INFO     | . stage-in = 0 s
[2025-11-18 10:26:37] 2025-11-18 18:25:55,149 | INFO     | . payload execution = 96 s
[2025-11-18 10:26:37] 2025-11-18 18:25:55,149 | INFO     | . stage-out = 0 s
[2025-11-18 10:26:37] 2025-11-18 18:25:55,149 | INFO     | . log creation = 0 s
[2025-11-18 10:26:37] 2025-11-18 18:25:55,149 | INFO     | ..............................
[2025-11-18 10:26:37] 2025-11-18 18:25:55,149 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-18 10:26:37] 2025-11-18 18:25:55,150 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6891579447/pilotlog.txt
[2025-11-18 10:26:37] [end log extracts]
[2025-11-18 10:26:37] 2025-11-18 18:25:55,161 | WARNING  | pilotErrorCodes = [1305, 1165] (will report primary/first error code)
[2025-11-18 10:26:37] 2025-11-18 18:25:55,162 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return c
[2025-11-18 10:26:37] 2025-11-18 18:25:55,437 | INFO     | 
[2025-11-18 10:26:37] 2025-11-18 18:25:55,438 | INFO     | job summary report
[2025-11-18 10:26:37] 2025-11-18 18:25:55,438 | INFO     | --------------------------------------------------
[2025-11-18 10:26:37] 2025-11-18 18:25:55,438 | INFO     | PanDA job id: 6891579447
[2025-11-18 10:26:37] 2025-11-18 18:25:55,438 | INFO     | task id: 47493068
[2025-11-18 10:26:37] 2025-11-18 18:25:55,438 | INFO     | error 1/2: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2025-11-18 10:23:38,841 CRITICAL Transform executor raised TransformValidationExceptio
[2025-11-18 10:26:37] 2025-11-18 18:25:55,438 | INFO     | error 2/2: 1165: Local output file is missing
[2025-11-18 10:26:37] 2025-11-18 18:25:55,438 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-18 10:26:37] 2025-11-18 18:25:55,438 | INFO     | pilot state: failed 
[2025-11-18 10:26:37] 2025-11-18 18:25:55,438 | INFO     | transexitcode: 65
[2025-11-18 10:26:37] 2025-11-18 18:25:55,438 | INFO     | exeerrorcode: 65
[2025-11-18 10:26:37] 2025-11-18 18:25:55,438 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: "IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFL
[2025-11-18 10:26:37] 2025-11-18 18:25:55,438 | INFO     | exitcode: 65
[2025-11-18 10:26:37] 2025-11-18 18:25:55,438 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: "IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 
[2025-11-18 10:26:37] 2025-11-18 18:25:55,438 | INFO     | cpuconsumptiontime: 40 s
[2025-11-18 10:26:37] 2025-11-18 18:25:55,438 | INFO     | nevents: 0
[2025-11-18 10:26:37] 2025-11-18 18:25:55,438 | INFO     | neventsw: 0
[2025-11-18 10:26:37] 2025-11-18 18:25:55,438 | INFO     | pid: 1244100
[2025-11-18 10:26:37] 2025-11-18 18:25:55,438 | INFO     | pgrp: 1244100
[2025-11-18 10:26:37] 2025-11-18 18:25:55,438 | INFO     | corecount: 12
[2025-11-18 10:26:37] 2025-11-18 18:25:55,439 | INFO     | event service: False
[2025-11-18 10:26:37] 2025-11-18 18:25:55,439 | INFO     | sizes: {0: 2297197, 9: 2297459, 11: 2297487, 111: 2322969, 112: 2322945, 113: 2327291, 115: 2327447, 240: 2327613}
[2025-11-18 10:26:37] 2025-11-18 18:25:55,439 | INFO     | --------------------------------------------------
[2025-11-18 10:26:37] 2025-11-18 18:25:55,439 | INFO     | 
[2025-11-18 10:26:37] 2025-11-18 18:25:55,439 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2025-11-18 10:26:37] 2025-11-18 18:25:55,475 | INFO     | time since job start (267s) is within the limit (172800.0s)
[2025-11-18 10:26:37] 2025-11-18 18:25:55,571 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-18 10:26:37] 2025-11-18 18:25:55,571 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-18 10:26:37] 2025-11-18 18:25:55,572 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-18 10:26:37] 2025-11-18 18:25:55,572 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-18 10:26:37] 2025-11-18 18:25:55,572 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-18 10:26:37] 2025-11-18 18:25:55,572 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-18 10:26:37] 2025-11-18 18:25:55,572 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-18 10:26:37] 2025-11-18 18:25:55,572 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-18 10:26:37] 2025-11-18 18:25:55,572 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-18 10:26:37] 2025-11-18 18:25:55,572 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-18 10:26:37] 2025-11-18 18:25:55,572 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-18 10:26:37] 2025-11-18 18:25:55,572 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-18 10:26:37] 2025-11-18 18:25:55,572 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-18 10:26:37] 2025-11-18 18:25:55,572 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-18 10:26:37] 2025-11-18 18:25:55,572 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-18 10:26:37] 2025-11-18 18:25:55,572 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-18 10:26:37] 2025-11-18 18:25:55,572 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-18 10:26:37] 2025-11-18 18:25:55,572 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-18 10:26:37] 2025-11-18 18:25:55,572 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-18 10:26:37] 2025-11-18 18:25:55,572 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-18 10:26:37] 2025-11-18 18:25:55,572 | INFO     | job 6891579447 has completed (purged errors)
[2025-11-18 10:26:37] 2025-11-18 18:25:55,573 | INFO     | overall cleanup function is called
[2025-11-18 10:26:37] 2025-11-18 18:25:56,580 | INFO     | --- collectZombieJob: --- 10, [1244100]
[2025-11-18 10:26:37] 2025-11-18 18:25:56,580 | INFO     | zombie collector waiting for pid 1244100
[2025-11-18 10:26:37] 2025-11-18 18:25:56,581 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-18 10:26:37] 2025-11-18 18:25:56,581 | INFO     | collected zombie processes
[2025-11-18 10:26:37] 2025-11-18 18:25:56,581 | INFO     | will attempt to kill all subprocesses of pid=1244100
[2025-11-18 10:26:37] 2025-11-18 18:25:57,019 | INFO     | process IDs to be killed: [1244100] (in reverse order)
[2025-11-18 10:26:37] 2025-11-18 18:25:57,072 | WARNING  | found no corresponding commands to process id(s)
[2025-11-18 10:26:37] 2025-11-18 18:25:57,072 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-18 10:26:37] 2025-11-18 18:25:57,087 | INFO     | did not find any defunct processes belonging to 1244100
[2025-11-18 10:26:37] 2025-11-18 18:25:57,097 | INFO     | did not find any defunct processes belonging to 1244100
[2025-11-18 10:26:37] 2025-11-18 18:25:57,098 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-18 10:26:37] 2025-11-18 18:25:57,098 | INFO     | ready for new job
[2025-11-18 10:26:37] 2025-11-18 18:25:57,098 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-18 10:26:37] 2025-11-18 18:25:57,099 | INFO     | ***************************************
[2025-11-18 10:26:37] 2025-11-18 18:25:57,099 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-18 10:26:37] 2025-11-18 18:25:57,099 | INFO     | ***************************************
[2025-11-18 10:26:37] 2025-11-18 18:25:57,100 | INFO     | 
[2025-11-18 10:26:37] 2025-11-18 18:25:57,105 | INFO     | architecture information:
[2025-11-18 10:26:37] 2025-11-18 18:25:57,109 | INFO     | executing command: cat /etc/os-release
[2025-11-18 10:26:37] 2025-11-18 18:25:57,124 | INFO     | cat /etc/os-release:
[2025-11-18 10:26:37] NAME="CentOS Linux"
[2025-11-18 10:26:37] VERSION="7 (Core)"
[2025-11-18 10:26:37] ID="centos"
[2025-11-18 10:26:37] ID_LIKE="rhel fedora"
[2025-11-18 10:26:37] VERSION_ID="7"
[2025-11-18 10:26:37] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-18 10:26:37] ANSI_COLOR="0;31"
[2025-11-18 10:26:37] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-18 10:26:37] HOME_URL="https://www.centos.org/"
[2025-11-18 10:26:37] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-18 10:26:37] 
[2025-11-18 10:26:37] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-18 10:26:37] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-18 10:26:37] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-18 10:26:37] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-18 10:26:37] 
[2025-11-18 10:26:37] 2025-11-18 18:25:57,124 | INFO     | ***************************************
[2025-11-18 10:26:37] 2025-11-18 18:25:57,637 | INFO     | executing command: df -mP /home/boinc/slots/0
[2025-11-18 10:26:37] 2025-11-18 18:25:57,660 | INFO     | sufficient remaining disk space (1365189328896 B)
[2025-11-18 10:26:37] 2025-11-18 18:25:57,660 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-18 10:26:37] 2025-11-18 18:25:57,660 | INFO     | current server update state: UPDATING_FINAL
[2025-11-18 10:26:37] 2025-11-18 18:25:57,660 | INFO     | update_server=False
[2025-11-18 10:26:37] 2025-11-18 18:25:57,660 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-18 10:26:37] 2025-11-18 18:25:57,777 | INFO     | all data control threads have been joined
[2025-11-18 10:26:37] 2025-11-18 18:25:57,790 | INFO     | all payload control threads have been joined
[2025-11-18 10:26:37] 2025-11-18 18:25:58,224 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-18 10:26:37] 2025-11-18 18:25:58,225 | INFO     | aborting loop
[2025-11-18 10:26:37] 2025-11-18 18:25:58,232 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-18 10:26:37] 2025-11-18 18:25:58,525 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-18 10:26:37] 2025-11-18 18:25:58,666 | INFO     | [job] retrieve thread has finished
[2025-11-18 10:26:37] 2025-11-18 18:25:58,783 | INFO     | [data] control thread has finished
[2025-11-18 10:26:37] 2025-11-18 18:25:58,796 | INFO     | [payload] control thread has finished
[2025-11-18 10:26:37] 2025-11-18 18:25:58,876 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-18 10:26:37] 2025-11-18 18:25:58,982 | INFO     | [payload] validate_post thread has finished
[2025-11-18 10:26:37] 2025-11-18 18:25:58,986 | INFO     | all job control threads have been joined
[2025-11-18 10:26:37] 2025-11-18 18:25:59,230 | INFO     | [job] job monitor thread has finished
[2025-11-18 10:26:37] 2025-11-18 18:25:59,461 | INFO     | [job] validate thread has finished
[2025-11-18 10:26:37] 2025-11-18 18:25:59,509 | INFO     | [job] create_data_payload thread has finished
[2025-11-18 10:26:37] 2025-11-18 18:25:59,510 | INFO     | [data] copytool_in thread has finished
[2025-11-18 10:26:37] 2025-11-18 18:25:59,569 | INFO     | [payload] execute_payloads thread has finished
[2025-11-18 10:26:37] 2025-11-18 18:25:59,651 | INFO     | [payload] failed_post thread has finished
[2025-11-18 10:26:37] 2025-11-18 18:25:59,693 | INFO     | [payload] validate_pre thread has finished
[2025-11-18 10:26:37] 2025-11-18 18:25:59,992 | INFO     | [job] control thread has finished
[2025-11-18 10:26:37] 2025-11-18 18:26:00,452 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-18 10:26:37] 2025-11-18 18:26:00,532 | INFO     | [data] copytool_out thread has finished
[2025-11-18 10:26:37] 2025-11-18 18:26:01,458 | INFO     | [job] queue monitor thread has finished
[2025-11-18 10:26:37] 2025-11-18 18:26:02,242 | INFO     | [data] queue_monitor thread has finished
[2025-11-18 10:26:37] 2025-11-18 18:26:28,337 | INFO     | [monitor] cgroup control has ended
[2025-11-18 10:26:37] 2025-11-18 18:26:29,154 | INFO     | PID=1230948 has CPU usage=1.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-18 10:26:37] 2025-11-18 18:26:29,154 | INFO     | .. there are 14 such processes running
[2025-11-18 10:26:37] 2025-11-18 18:26:29,155 | INFO     | found 0 job(s) in 20 queues
[2025-11-18 10:26:37] 2025-11-18 18:26:29,155 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-18 10:26:37] 2025-11-18 18:26:29,155 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-18 10:26:37] 2025-11-18 18:26:30,057 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140534825731904)>', '<ExcThread(monitor, started 140534131709696)>']
[2025-11-18 10:26:37] 2025-11-18 18:26:30,160 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-18 10:26:37] 2025-11-18 18:26:30,160 | INFO     | [monitor] control thread has ended
[2025-11-18 10:26:37] 2025-11-18 18:26:35,083 | INFO     | all workflow threads have been joined
[2025-11-18 10:26:37] 2025-11-18 18:26:35,083 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-18 10:26:37] 2025-11-18 18:26:35,084 | INFO     | traces error code: 0
[2025-11-18 10:26:37] 2025-11-18 18:26:35,084 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-18 10:26:37] 2025-11-18 18:26:35,658 [wrapper] ==== pilot stdout END ====
[2025-11-18 10:26:37] 2025-11-18 18:26:35,680 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-18 10:26:37] 2025-11-18 18:26:35,711 [wrapper] pilotpid: 1230948
[2025-11-18 10:26:37] 2025-11-18 18:26:35,744 [wrapper] Pilot exit status: 0
[2025-11-18 10:26:37] 2025-11-18 18:26:35,840 [wrapper] pandaids: 6891579447
[2025-11-18 10:26:37] 2025-11-18 18:26:36,233 [wrapper] cleanup supervisor_pilot 1230957 1230949
[2025-11-18 10:26:37] 2025-11-18 18:26:36,264 [wrapper] Test setup, not cleaning
[2025-11-18 10:26:37] 2025-11-18 18:26:36,304 [wrapper] apfmon messages muted
[2025-11-18 10:26:37] 2025-11-18 18:26:36,337 [wrapper] ==== wrapper stdout END ====
[2025-11-18 10:26:37] 2025-11-18 18:26:36,358 [wrapper] ==== wrapper stderr END ====
[2025-11-18 10:26:37]  *** Error codes and diagnostics ***
[2025-11-18 10:26:37]     "exeErrorCode": 65,
[2025-11-18 10:26:37]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: \"IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 cannot be opened - STOP\"",
[2025-11-18 10:26:37]     "pilotErrorCode": 1305,
[2025-11-18 10:26:37]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: \"IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 canno",
[2025-11-18 10:26:37]  *** Listing of results directory ***
[2025-11-18 10:26:37] total 404700
[2025-11-18 10:26:37] -rw-r--r--. 1 boinc boinc    576529 Nov 18 08:45 pilot3.tar.gz
[2025-11-18 10:26:37] -rw-r--r--. 1 boinc boinc      5112 Nov 18 08:48 queuedata.json
[2025-11-18 10:26:37] -rwx------. 1 boinc boinc     36292 Nov 18 08:49 runpilot2-wrapper.sh
[2025-11-18 10:26:37] -rw-r--r--. 1 boinc boinc       100 Nov 18 10:21 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-18 10:26:37] -rwxr-xr-x. 1 boinc boinc      7986 Nov 18 10:21 run_atlas
[2025-11-18 10:26:37] -rw-r--r--. 1 boinc boinc       105 Nov 18 10:21 job.xml
[2025-11-18 10:26:37] -rw-r--r--. 2 boinc boinc 410188042 Nov 18 10:21 EVNT.47493065._000395.pool.root.1
[2025-11-18 10:26:37] -rw-r--r--. 2 boinc boinc     15120 Nov 18 10:21 start_atlas.sh
[2025-11-18 10:26:37] drwxrwx--x. 2 boinc boinc      4096 Nov 18 10:21 shared
[2025-11-18 10:26:37] -rw-r--r--. 2 boinc boinc    590094 Nov 18 10:21 input.tar.gz
[2025-11-18 10:26:37] -rw-r--r--. 1 boinc boinc      6595 Nov 18 10:21 init_data.xml
[2025-11-18 10:26:37] -rw-r--r--. 1 boinc boinc         0 Nov 18 10:21 boinc_lockfile
[2025-11-18 10:26:37] -rw-r--r--. 1 boinc boinc      2773 Nov 18 10:21 pandaJob.out
[2025-11-18 10:26:37] -rw-------. 1 boinc boinc    992798 Nov 18 10:21 agis_schedconf.cvmfs.json
[2025-11-18 10:26:37] -rw-------. 1 boinc boinc   1525063 Nov 18 10:21 agis_ddmendpoints.agis.ALL.json
[2025-11-18 10:26:37] drwx------. 5 boinc boinc      4096 Nov 18 10:21 pilot3
[2025-11-18 10:26:37] -rw-r--r--. 1 boinc boinc       524 Nov 18 10:23 boinc_task_state.xml
[2025-11-18 10:26:37] -rw-------. 1 boinc boinc      1014 Nov 18 10:23 memory_monitor_summary.json
[2025-11-18 10:26:37] -rw-------. 1 boinc boinc     49666 Nov 18 10:23 log.47493068._003946.job.log.tgz.1
[2025-11-18 10:26:37] -rw-------. 1 boinc boinc        95 Nov 18 10:25 pilot_heartbeat.json
[2025-11-18 10:26:37] -rw-------. 1 boinc boinc     10333 Nov 18 10:25 heartbeat.json
[2025-11-18 10:26:37] -rw-------. 1 boinc boinc      4823 Nov 18 10:26 pilotlog.txt
[2025-11-18 10:26:37] -rw-r--r--. 1 boinc boinc        23 Nov 18 10:26 wrapper_checkpoint.txt
[2025-11-18 10:26:37] -rw-r--r--. 1 boinc boinc      8192 Nov 18 10:26 boinc_mmap_file
[2025-11-18 10:26:37] -rw-------. 1 boinc boinc    100318 Nov 18 10:26 log.47493068._003946.job.log.1
[2025-11-18 10:26:37] -rw-------. 1 boinc boinc       186 Nov 18 10:26 output.list
[2025-11-18 10:26:37] -rw-r--r--. 1 boinc boinc       620 Nov 18 10:26 runtime_log
[2025-11-18 10:26:37] -rw-------. 1 boinc boinc    174080 Nov 18 10:26 result.tar.gz
[2025-11-18 10:26:37] -rw-r--r--. 1 boinc boinc      8528 Nov 18 10:26 runtime_log.err
[2025-11-18 10:26:37] -rw-------. 1 boinc boinc       646 Nov 18 10:26 0LdKDmG4df8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmztFKDmOeChzm.diag
[2025-11-18 10:26:37] -rw-r--r--. 1 boinc boinc     22502 Nov 18 10:26 stderr.txt
[2025-11-18 10:26:37] No HITS result produced
[2025-11-18 10:26:37]  *** Contents of shared directory: ***
[2025-11-18 10:26:37] total 401344
[2025-11-18 10:26:37] -rw-r--r--. 2 boinc boinc 410188042 Nov 18 10:21 ATLAS.root_0
[2025-11-18 10:26:37] -rw-r--r--. 2 boinc boinc     15120 Nov 18 10:21 start_atlas.sh
[2025-11-18 10:26:37] -rw-r--r--. 2 boinc boinc    590094 Nov 18 10:21 input.tar.gz
[2025-11-18 10:26:37] -rw-------. 1 boinc boinc    174080 Nov 18 10:26 result.tar.gz
10:26:38 (1227079): run_atlas exited; CPU time 42.929558
10:26:38 (1227079): called boinc_finish(0)

</stderr_txt>
]]>

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