Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
20:52:07 (24228): wrapper (7.7.26015): starting
20:52:07 (24228): wrapper: running run_atlas (--nthreads 8)
[2025-11-19 20:52:07] Arguments: --nthreads 8
[2025-11-19 20:52:07] Threads: 8
[2025-11-19 20:52:07] Checking for CVMFS
[2025-11-19 20:52:07] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-19 20:52:08] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-19 20:52:08] Running cvmfs_config stat atlas.cern.ch
[2025-11-19 20:52:09] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-19 20:52:09] 2.11.2.0 1304 275568 145192 153055 0 233 22781629 25165824 4620 130560 4 127646971 99.883 78523364 3039 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-19 20:52:09] CVMFS is ok
[2025-11-19 20:52:09] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-19 20:52:09] Checking for apptainer binary...
[2025-11-19 20:52:10] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-19 20:52:10] Running /usr/bin/apptainer --version
[2025-11-19 20:52:10] apptainer version 1.3.2-1.el7
[2025-11-19 20:52:10] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-19 20:52:30] cg-vwn245.simple-grid.lan
[2025-11-19 20:52:30] apptainer works
[2025-11-19 20:52:30] Set ATHENA_PROC_NUMBER=8
[2025-11-19 20:52:30] Set ATHENA_CORE_NUMBER=8
[2025-11-19 20:52:30] Starting ATLAS job with PandaID=6891577885
[2025-11-19 20:52:30] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/18 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-20 22:11:21]  *** The last 200 lines of the pilot log: ***
[2025-11-20 22:11:21] 2025-11-20 21:10:33,830 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-20 22:11:21] 2025-11-20 21:10:34,388 | INFO     | time since job start (90853s) is within the limit (172800.0s)
[2025-11-20 22:11:21] 2025-11-20 21:10:36,333 | INFO     | monitor loop #6113: job 0:6891577885 is in state 'finished'
[2025-11-20 22:11:21] 2025-11-20 21:10:36,333 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-20 22:11:21] 2025-11-20 21:10:36,398 | INFO     | time since job start (90855s) is within the limit (172800.0s)
[2025-11-20 22:11:21] 2025-11-20 21:10:38,404 | INFO     | time since job start (90857s) is within the limit (172800.0s)
[2025-11-20 22:11:21] 2025-11-20 21:10:38,841 | INFO     | monitor loop #6114: job 0:6891577885 is in state 'finished'
[2025-11-20 22:11:21] 2025-11-20 21:10:38,841 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-20 22:11:21] 2025-11-20 21:10:40,411 | INFO     | time since job start (90859s) is within the limit (172800.0s)
[2025-11-20 22:11:21] 2025-11-20 21:10:40,411 | INFO     | 90872s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-11-20 22:11:21] 2025-11-20 21:10:41,345 | INFO     | monitor loop #6115: job 0:6891577885 is in state 'finished'
[2025-11-20 22:11:21] 2025-11-20 21:10:41,345 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-20 22:11:21] 2025-11-20 21:10:42,417 | INFO     | time since job start (90861s) is within the limit (172800.0s)
[2025-11-20 22:11:21] 2025-11-20 21:10:43,851 | INFO     | monitor loop #6116: job 0:6891577885 is in state 'finished'
[2025-11-20 22:11:21] 2025-11-20 21:10:43,851 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-20 22:11:21] 2025-11-20 21:10:44,423 | INFO     | time since job start (90863s) is within the limit (172800.0s)
[2025-11-20 22:11:21] 2025-11-20 21:10:44,923 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-20 22:11:21] 2025-11-20 21:10:44,925 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-11-20 22:11:21] 2025-11-20 21:10:44,926 | INFO     | using path: /var/lib/boinc/slots/18/PanDA_Pilot-6891577885/memory_monitor_summary.json (trf name=prmon)
[2025-11-20 22:11:21] 2025-11-20 21:10:44,927 | INFO     | extracted standard info from prmon json
[2025-11-20 22:11:21] 2025-11-20 21:10:44,927 | INFO     | extracted standard memory fields from prmon json
[2025-11-20 22:11:21] 2025-11-20 21:10:44,928 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-20 22:11:21] 2025-11-20 21:10:44,967 | INFO     | fitting pss+swap vs Time
[2025-11-20 22:11:21] 2025-11-20 21:10:44,969 | INFO     | sum of square deviations: 1003189694506.8495
[2025-11-20 22:11:21] 2025-11-20 21:10:45,083 | INFO     | sum of deviations: 3819930105311.839
[2025-11-20 22:11:21] 2025-11-20 21:10:45,084 | INFO     | mean x: 1763627817.1913455
[2025-11-20 22:11:21] 2025-11-20 21:10:45,084 | INFO     | mean y: 2837394.6754563893
[2025-11-20 22:11:21] 2025-11-20 21:10:45,084 | INFO     | intersect: -6712677158.896971
[2025-11-20 22:11:21] 2025-11-20 21:10:45,086 | INFO     | chi2: 25.390242953595862
[2025-11-20 22:11:21] 2025-11-20 21:10:45,088 | INFO     | sum of square deviations: 993050255742.229
[2025-11-20 22:11:21] 2025-11-20 21:10:45,177 | INFO     | sum of deviations: 4294490370191.075
[2025-11-20 22:11:21] 2025-11-20 21:10:45,178 | INFO     | mean x: 1763627664.6953866
[2025-11-20 22:11:21] 2025-11-20 21:10:45,178 | INFO     | mean y: 2844530.86431479
[2025-11-20 22:11:21] 2025-11-20 21:10:45,178 | INFO     | intersect: -7624042405.463007
[2025-11-20 22:11:21] 2025-11-20 21:10:45,180 | INFO     | chi2: 22.3670004171811
[2025-11-20 22:11:21] 2025-11-20 21:10:45,180 | INFO     | current chi2=22.3670004171811 (change=11.90710361432993 %)
[2025-11-20 22:11:21] 2025-11-20 21:10:45,180 | INFO     | right removable region: 1473
[2025-11-20 22:11:21] 2025-11-20 21:10:45,182 | INFO     | sum of square deviations: 993049180922.2285
[2025-11-20 22:11:21] 2025-11-20 21:10:45,241 | INFO     | sum of deviations: 3197333351936.394
[2025-11-20 22:11:21] 2025-11-20 21:10:45,241 | INFO     | mean x: 1763627969.6953866
[2025-11-20 22:11:21] 2025-11-20 21:10:45,241 | INFO     | mean y: 2846757.4552238807
[2025-11-20 22:11:21] 2025-11-20 21:10:45,242 | INFO     | intersect: -5675529133.936346
[2025-11-20 22:11:21] 2025-11-20 21:10:45,243 | INFO     | chi2: 20.579092683146968
[2025-11-20 22:11:21] 2025-11-20 21:10:45,243 | INFO     | current chi2=20.579092683146968 (change=18.94881541402313 %)
[2025-11-20 22:11:21] 2025-11-20 21:10:45,244 | INFO     | left removable region: 10
[2025-11-20 22:11:21] 2025-11-20 21:10:45,246 | INFO     | sum of square deviations: 970982342547.8922
[2025-11-20 22:11:21] 2025-11-20 21:10:45,309 | INFO     | sum of deviations: 3220898201166.389
[2025-11-20 22:11:21] 2025-11-20 21:10:45,309 | INFO     | mean x: 1763627939.2043746
[2025-11-20 22:11:21] 2025-11-20 21:10:45,309 | INFO     | mean y: 2863939.4702665755
[2025-11-20 22:11:21] 2025-11-20 21:10:45,309 | INFO     | intersect: -5847361968.865421
[2025-11-20 22:11:21] 2025-11-20 21:10:45,311 | INFO     | chi2: 13.135369905759024
[2025-11-20 22:11:21] 2025-11-20 21:10:45,311 | INFO     | current memory leak: 3.32 B/s (using 1463 data points, chi2=13.14)
[2025-11-20 22:11:21] 2025-11-20 21:10:45,314 | INFO     | could have reported an average CPU frequency of 1999 MHz (50 samples)
[2025-11-20 22:11:21] 2025-11-20 21:10:45,314 | INFO     | ..............................
[2025-11-20 22:11:21] 2025-11-20 21:10:45,314 | INFO     | . Timing measurements:
[2025-11-20 22:11:21] 2025-11-20 21:10:45,315 | INFO     | . get job = 0 s
[2025-11-20 22:11:21] 2025-11-20 21:10:45,315 | INFO     | . initial setup = 12 s
[2025-11-20 22:11:21] 2025-11-20 21:10:45,315 | INFO     | . payload setup = 180 s
[2025-11-20 22:11:21] 2025-11-20 21:10:45,315 | INFO     | . stage-in = 0 s
[2025-11-20 22:11:21] 2025-11-20 21:10:45,315 | INFO     | . payload execution = 90371 s
[2025-11-20 22:11:21] 2025-11-20 21:10:45,315 | INFO     | . stage-out = 6 s
[2025-11-20 22:11:21] 2025-11-20 21:10:45,315 | INFO     | . log creation = 2 s
[2025-11-20 22:11:21] 2025-11-20 21:10:45,315 | INFO     | ..............................
[2025-11-20 22:11:21] 2025-11-20 21:10:45,797 | INFO     | 
[2025-11-20 22:11:21] 2025-11-20 21:10:45,797 | INFO     | job summary report
[2025-11-20 22:11:21] 2025-11-20 21:10:45,797 | INFO     | --------------------------------------------------
[2025-11-20 22:11:21] 2025-11-20 21:10:45,798 | INFO     | PanDA job id: 6891577885
[2025-11-20 22:11:21] 2025-11-20 21:10:45,798 | INFO     | task id: 47493068
[2025-11-20 22:11:21] 2025-11-20 21:10:45,798 | INFO     | errors: (none)
[2025-11-20 22:11:21] 2025-11-20 21:10:45,798 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-20 22:11:21] 2025-11-20 21:10:45,798 | INFO     | pilot state: finished 
[2025-11-20 22:11:21] 2025-11-20 21:10:45,798 | INFO     | transexitcode: 0
[2025-11-20 22:11:21] 2025-11-20 21:10:45,798 | INFO     | exeerrorcode: 0
[2025-11-20 22:11:21] 2025-11-20 21:10:45,798 | INFO     | exeerrordiag: 
[2025-11-20 22:11:21] 2025-11-20 21:10:45,798 | INFO     | exitcode: 0
[2025-11-20 22:11:21] 2025-11-20 21:10:45,798 | INFO     | exitmsg: OK
[2025-11-20 22:11:21] 2025-11-20 21:10:45,798 | INFO     | cpuconsumptiontime: 332663 s
[2025-11-20 22:11:21] 2025-11-20 21:10:45,799 | INFO     | nevents: 1000
[2025-11-20 22:11:21] 2025-11-20 21:10:45,799 | INFO     | neventsw: 0
[2025-11-20 22:11:21] 2025-11-20 21:10:45,799 | INFO     | pid: 2228
[2025-11-20 22:11:21] 2025-11-20 21:10:45,799 | INFO     | pgrp: 2228
[2025-11-20 22:11:21] 2025-11-20 21:10:45,799 | INFO     | corecount: 8
[2025-11-20 22:11:21] 2025-11-20 21:10:45,799 | INFO     | event service: False
[2025-11-20 22:11:21] 2025-11-20 21:10:45,799 | INFO     | sizes: {0: 2296974, 1: 2297229, 12: 2297229, 23: 2297257, 34: 2297285, 44: 2297313, 55: 2297469, 66: 2297497, 77: 2297525, 87: 2297581, 98: 2297609, 99: 2298179, 1
[2025-11-20 22:11:21] 2025-11-20 21:10:45,799 | INFO     | --------------------------------------------------
[2025-11-20 22:11:21] 2025-11-20 21:10:45,799 | INFO     | 
[2025-11-20 22:11:21] 2025-11-20 21:10:45,799 | INFO     | executing command: ls -lF /var/lib/boinc/slots/18
[2025-11-20 22:11:21] 2025-11-20 21:10:46,199 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-20 22:11:21] 2025-11-20 21:10:46,200 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-20 22:11:21] 2025-11-20 21:10:46,200 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-20 22:11:21] 2025-11-20 21:10:46,200 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-20 22:11:21] 2025-11-20 21:10:46,200 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-20 22:11:21] 2025-11-20 21:10:46,200 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-20 22:11:21] 2025-11-20 21:10:46,200 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-20 22:11:21] 2025-11-20 21:10:46,200 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-20 22:11:21] 2025-11-20 21:10:46,200 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-20 22:11:21] 2025-11-20 21:10:46,200 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-20 22:11:21] 2025-11-20 21:10:46,200 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-20 22:11:21] 2025-11-20 21:10:46,200 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-20 22:11:21] 2025-11-20 21:10:46,201 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-20 22:11:21] 2025-11-20 21:10:46,201 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-20 22:11:21] 2025-11-20 21:10:46,201 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-20 22:11:21] 2025-11-20 21:10:46,201 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-20 22:11:21] 2025-11-20 21:10:46,201 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-20 22:11:21] 2025-11-20 21:10:46,201 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-20 22:11:21] 2025-11-20 21:10:46,201 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-20 22:11:21] 2025-11-20 21:10:46,201 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-20 22:11:21] 2025-11-20 21:10:46,201 | INFO     | job 6891577885 has completed (purged errors)
[2025-11-20 22:11:21] 2025-11-20 21:10:46,201 | INFO     | overall cleanup function is called
[2025-11-20 22:11:21] 2025-11-20 21:10:47,227 | INFO     | --- collectZombieJob: --- 10, [2228]
[2025-11-20 22:11:21] 2025-11-20 21:10:47,227 | INFO     | zombie collector waiting for pid 2228
[2025-11-20 22:11:21] 2025-11-20 21:10:47,227 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-20 22:11:21] 2025-11-20 21:10:47,227 | INFO     | collected zombie processes
[2025-11-20 22:11:21] 2025-11-20 21:10:47,227 | INFO     | will attempt to kill all subprocesses of pid=2228
[2025-11-20 22:11:21] 2025-11-20 21:10:47,347 | INFO     | process IDs to be killed: [2228] (in reverse order)
[2025-11-20 22:11:21] 2025-11-20 21:10:47,417 | WARNING  | found no corresponding commands to process id(s)
[2025-11-20 22:11:21] 2025-11-20 21:10:47,418 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-20 22:11:21] 2025-11-20 21:10:47,422 | INFO     | did not find any defunct processes belonging to 2228
[2025-11-20 22:11:21] 2025-11-20 21:10:47,425 | INFO     | did not find any defunct processes belonging to 2228
[2025-11-20 22:11:21] 2025-11-20 21:10:47,427 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-20 22:11:21] 2025-11-20 21:10:47,428 | INFO     | ready for new job
[2025-11-20 22:11:21] 2025-11-20 21:10:47,428 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-20 22:11:21] 2025-11-20 21:10:47,435 | INFO     | ***************************************
[2025-11-20 22:11:21] 2025-11-20 21:10:47,435 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-20 22:11:21] 2025-11-20 21:10:47,435 | INFO     | ***************************************
[2025-11-20 22:11:21] 2025-11-20 21:10:47,435 | INFO     | 
[2025-11-20 22:11:21] 2025-11-20 21:10:47,436 | INFO     | pilot is running in a VM
[2025-11-20 22:11:21] 2025-11-20 21:10:47,436 | INFO     | architecture information:
[2025-11-20 22:11:21] 2025-11-20 21:10:47,436 | INFO     | executing command: cat /etc/os-release
[2025-11-20 22:11:21] 2025-11-20 21:10:47,563 | INFO     | cat /etc/os-release:
[2025-11-20 22:11:21] NAME="CentOS Linux"
[2025-11-20 22:11:21] VERSION="7 (Core)"
[2025-11-20 22:11:21] ID="centos"
[2025-11-20 22:11:21] ID_LIKE="rhel fedora"
[2025-11-20 22:11:21] VERSION_ID="7"
[2025-11-20 22:11:21] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-20 22:11:21] ANSI_COLOR="0;31"
[2025-11-20 22:11:21] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-20 22:11:21] HOME_URL="https://www.centos.org/"
[2025-11-20 22:11:21] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-20 22:11:21] 
[2025-11-20 22:11:21] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-20 22:11:21] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-20 22:11:21] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-20 22:11:21] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-20 22:11:21] 
[2025-11-20 22:11:21] 2025-11-20 21:10:47,564 | INFO     | ***************************************
[2025-11-20 22:11:21] 2025-11-20 21:10:48,067 | INFO     | executing command: df -mP /var/lib/boinc/slots/18
[2025-11-20 22:11:21] 2025-11-20 21:10:48,261 | INFO     | sufficient remaining disk space (495108227072 B)
[2025-11-20 22:11:21] 2025-11-20 21:10:48,262 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-20 22:11:21] 2025-11-20 21:10:48,262 | INFO     | current server update state: UPDATING_FINAL
[2025-11-20 22:11:21] 2025-11-20 21:10:48,262 | INFO     | update_server=False
[2025-11-20 22:11:21] 2025-11-20 21:10:48,262 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-20 22:11:21] 2025-11-20 21:10:48,263 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-20 22:11:21] 2025-11-20 21:10:48,263 | INFO     | aborting loop
[2025-11-20 22:11:21] 2025-11-20 21:10:48,273 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-20 22:11:21] 2025-11-20 21:10:48,683 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-20 22:11:21] 2025-11-20 21:10:48,775 | INFO     | all data control threads have been joined
[2025-11-20 22:11:21] 2025-11-20 21:10:48,957 | INFO     | all payload control threads have been joined
[2025-11-20 22:11:21] 2025-11-20 21:10:49,268 | INFO     | [job] retrieve thread has finished
[2025-11-20 22:11:21] 2025-11-20 21:10:49,269 | INFO     | [job] job monitor thread has finished
[2025-11-20 22:11:21] 2025-11-20 21:10:49,598 | INFO     | all job control threads have been joined
[2025-11-20 22:11:21] 2025-11-20 21:10:49,765 | INFO     | [payload] execute_payloads thread has finished
[2025-11-20 22:11:21] 2025-11-20 21:10:49,781 | INFO     | [data] control thread has finished
[2025-11-20 22:11:21] 2025-11-20 21:10:49,826 | INFO     | [payload] validate_pre thread has finished
[2025-11-20 22:11:21] 2025-11-20 21:10:49,963 | INFO     | [payload] control thread has finished
[2025-11-20 22:11:21] 2025-11-20 21:10:49,994 | INFO     | [job] validate thread has finished
[2025-11-20 22:11:21] 2025-11-20 21:10:50,011 | INFO     | [job] create_data_payload thread has finished
[2025-11-20 22:11:21] 2025-11-20 21:10:50,280 | INFO     | [data] copytool_out thread has finished
[2025-11-20 22:11:21] 2025-11-20 21:10:50,337 | INFO     | [data] copytool_in thread has finished
[2025-11-20 22:11:21] 2025-11-20 21:10:50,480 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-20 22:11:21] 2025-11-20 21:10:50,555 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-20 22:11:21] 2025-11-20 21:10:50,604 | INFO     | [job] control thread has finished
[2025-11-20 22:11:21] 2025-11-20 21:10:50,712 | INFO     | [payload] validate_post thread has finished
[2025-11-20 22:11:21] 2025-11-20 21:10:50,715 | INFO     | [payload] failed_post thread has finished
[2025-11-20 22:11:21] 2025-11-20 21:10:51,486 | INFO     | [job] queue monitor thread has finished
[2025-11-20 22:11:21] 2025-11-20 21:10:52,693 | INFO     | [data] queue_monitor thread has finished
[2025-11-20 22:11:21] 2025-11-20 21:10:58,826 | INFO     | [monitor] cgroup control has ended
[2025-11-20 22:11:21] 2025-11-20 21:10:58,976 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140316436817728)>', '<ExcThread(monitor, started 140316128548608)>']
[2025-11-20 22:11:21] 2025-11-20 21:11:04,002 | INFO     | all workflow threads have been joined
[2025-11-20 22:11:21] 2025-11-20 21:11:04,002 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-20 22:11:21] 2025-11-20 21:11:04,002 | INFO     | traces error code: 0
[2025-11-20 22:11:21] 2025-11-20 21:11:04,003 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-20 22:11:21] 2025-11-20 21:11:17,654 | INFO     | PID=28014 has CPU usage=1.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-20 22:11:21] 2025-11-20 21:11:17,654 | INFO     | .. there are 9 such processes running
[2025-11-20 22:11:21] 2025-11-20 21:11:17,656 | INFO     | found 0 job(s) in 20 queues
[2025-11-20 22:11:21] 2025-11-20 21:11:17,656 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-20 22:11:21] 2025-11-20 21:11:17,656 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-20 22:11:21] 2025-11-20 21:11:17,656 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-20 22:11:21] 2025-11-20 21:11:17,656 | INFO     | [monitor] control thread has ended
[2025-11-20 22:11:21] 2025-11-20 21:11:17,901 [wrapper] ==== pilot stdout END ====
[2025-11-20 22:11:21] 2025-11-20 21:11:17,905 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-20 22:11:21] 2025-11-20 21:11:18,016 [wrapper] pilotpid: 28014
[2025-11-20 22:11:21] 2025-11-20 21:11:18,084 [wrapper] Pilot exit status: 0
[2025-11-20 22:11:21] 2025-11-20 21:11:18,476 [wrapper] pandaids: 6891577885
[2025-11-20 22:11:21] 2025-11-20 21:11:19,253 [wrapper] cleanup supervisor_pilot  6589 28015
[2025-11-20 22:11:21] 2025-11-20 21:11:19,371 [wrapper] Test setup, not cleaning
[2025-11-20 22:11:21] 2025-11-20 21:11:19,474 [wrapper] apfmon messages muted
[2025-11-20 22:11:21] 2025-11-20 21:11:19,667 [wrapper] ==== wrapper stdout END ====
[2025-11-20 22:11:21] 2025-11-20 21:11:19,713 [wrapper] ==== wrapper stderr END ====
[2025-11-20 22:11:21]  *** Error codes and diagnostics ***
[2025-11-20 22:11:21]     "exeErrorCode": 0,
[2025-11-20 22:11:21]     "exeErrorDiag": "",
[2025-11-20 22:11:21]     "pilotErrorCode": 0,
[2025-11-20 22:11:21]     "pilotErrorDiag": "",
[2025-11-20 22:11:21]  *** Listing of results directory ***
[2025-11-20 22:11:21] total 1326132
[2025-11-20 22:11:21] -rw-r--r--. 1 boinc boinc    576529 Nov 18 17:45 pilot3.tar.gz
[2025-11-20 22:11:21] -rw-r--r--. 1 boinc boinc      5112 Nov 18 17:48 queuedata.json
[2025-11-20 22:11:21] -rwx------. 1 boinc boinc     36292 Nov 18 17:49 runpilot2-wrapper.sh
[2025-11-20 22:11:21] -rw-r--r--. 1 boinc boinc       100 Nov 19 20:52 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-20 22:11:21] -rwxr-xr-x. 1 boinc boinc      7986 Nov 19 20:52 run_atlas
[2025-11-20 22:11:21] -rw-r--r--. 1 boinc boinc       105 Nov 19 20:52 job.xml
[2025-11-20 22:11:21] -rw-r--r--. 2 boinc boinc 410406253 Nov 19 20:52 EVNT.47493065._000384.pool.root.1
[2025-11-20 22:11:21] -rw-r--r--. 1 boinc boinc      6391 Nov 19 20:52 init_data.xml
[2025-11-20 22:11:21] -rw-r--r--. 2 boinc boinc     15120 Nov 19 20:52 start_atlas.sh
[2025-11-20 22:11:21] drwxrwx--x. 2 boinc boinc        68 Nov 19 20:52 shared
[2025-11-20 22:11:21] -rw-r--r--. 2 boinc boinc    590092 Nov 19 20:52 input.tar.gz
[2025-11-20 22:11:21] -rw-r--r--. 1 boinc boinc         0 Nov 19 20:52 boinc_lockfile
[2025-11-20 22:11:21] -rw-r--r--. 1 boinc boinc      2773 Nov 19 20:52 pandaJob.out
[2025-11-20 22:11:21] -rw-------. 1 boinc boinc    989451 Nov 19 20:56 agis_schedconf.cvmfs.json
[2025-11-20 22:11:21] drwx------. 5 boinc boinc      4096 Nov 19 20:56 pilot3
[2025-11-20 22:11:21] -rw-r--r--. 1 boinc boinc       533 Nov 20 21:43 boinc_task_state.xml
[2025-11-20 22:11:21] -rw-------. 1 boinc boinc 914293116 Nov 20 22:07 HITS.47493068._003839.pool.root.1
[2025-11-20 22:11:21] -rw-------. 1 boinc boinc      1033 Nov 20 22:09 memory_monitor_summary.json
[2025-11-20 22:11:21] -rw-------. 1 boinc boinc   1526164 Nov 20 22:09 agis_ddmendpoints.agis.ALL.json
[2025-11-20 22:11:21] -rw-------. 1 boinc boinc   2554806 Nov 20 22:09 log.47493068._003839.job.log.tgz.1
[2025-11-20 22:11:21] -rw-------. 1 boinc boinc      8641 Nov 20 22:10 heartbeat.json
[2025-11-20 22:11:21] -rw-r--r--. 1 boinc boinc        29 Nov 20 22:10 wrapper_checkpoint.txt
[2025-11-20 22:11:21] -rw-r--r--. 1 boinc boinc      8192 Nov 20 22:10 boinc_mmap_file
[2025-11-20 22:11:21] -rw-------. 1 boinc boinc        95 Nov 20 22:11 pilot_heartbeat.json
[2025-11-20 22:11:21] -rw-------. 1 boinc boinc       820 Nov 20 22:11 pilotlog.txt
[2025-11-20 22:11:21] -rw-------. 1 boinc boinc  12123268 Nov 20 22:11 log.47493068._003839.job.log.1
[2025-11-20 22:11:21] -rw-------. 1 boinc boinc       353 Nov 20 22:11 output.list
[2025-11-20 22:11:21] -rw-r--r--. 1 boinc boinc       620 Nov 20 22:11 runtime_log
[2025-11-20 22:11:21] -rw-------. 1 boinc boinc  14694400 Nov 20 22:11 result.tar.gz
[2025-11-20 22:11:21] -rw-r--r--. 1 boinc boinc      8717 Nov 20 22:11 runtime_log.err
[2025-11-20 22:11:21] -rw-------. 1 boinc boinc       662 Nov 20 22:11 BaKKDmG4df8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmktFKDmC9WYwn.diag
[2025-11-20 22:11:21] -rw-r--r--. 1 boinc boinc     21453 Nov 20 22:11 stderr.txt
[2025-11-20 22:11:21] HITS file was successfully produced:
[2025-11-20 22:11:21] -rw-------. 1 boinc boinc 914293116 Nov 20 22:07 shared/HITS.pool.root.1
[2025-11-20 22:11:21]  *** Contents of shared directory: ***
[2025-11-20 22:11:21] total 1308604
[2025-11-20 22:11:21] -rw-r--r--. 2 boinc boinc 410406253 Nov 19 20:52 ATLAS.root_0
[2025-11-20 22:11:21] -rw-r--r--. 2 boinc boinc     15120 Nov 19 20:52 start_atlas.sh
[2025-11-20 22:11:21] -rw-r--r--. 2 boinc boinc    590092 Nov 19 20:52 input.tar.gz
[2025-11-20 22:11:21] -rw-------. 1 boinc boinc 914293116 Nov 20 22:07 HITS.pool.root.1
[2025-11-20 22:11:21] -rw-------. 1 boinc boinc  14694400 Nov 20 22:11 result.tar.gz
22:11:22 (24228): run_atlas exited; CPU time 333268.151921
22:11:22 (24228): called boinc_finish(0)

</stderr_txt>
]]>

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