Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
22:17:40 (16626): wrapper (7.7.26015): starting
22:17:40 (16626): wrapper: running run_atlas (--nthreads 8)
[2025-11-20 22:17:40] Arguments: --nthreads 8
[2025-11-20 22:17:40] Threads: 8
[2025-11-20 22:17:40] Checking for CVMFS
[2025-11-20 22:17:41] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-20 22:17:42] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-20 22:17:42] Running cvmfs_config stat atlas.cern.ch
[2025-11-20 22:17:42] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-20 22:17:42] 2.11.2.0 20802 77427 103844 153088 2 294 15682316 25165825 4383 130560 7 22854886 99.854 14038992 2080 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-20 22:17:42] CVMFS is ok
[2025-11-20 22:17:42] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-20 22:17:42] Checking for apptainer binary...
[2025-11-20 22:17:42] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-20 22:17:42] Running /usr/bin/apptainer --version
[2025-11-20 22:17:42] apptainer version 1.3.2-1.el7
[2025-11-20 22:17:42] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-20 22:17:46] cg-vwn369.simple-grid.lan
[2025-11-20 22:17:46] apptainer works
[2025-11-20 22:17:46] Set ATHENA_PROC_NUMBER=8
[2025-11-20 22:17:46] Set ATHENA_CORE_NUMBER=8
[2025-11-20 22:17:46] Starting ATLAS job with PandaID=6891577873
[2025-11-20 22:17:46] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/7 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-21 23:54:18]  *** The last 200 lines of the pilot log: ***
[2025-11-21 23:54:18] 2025-11-21 22:53:44,115 | INFO     | extracted standard info from prmon json
[2025-11-21 23:54:18] 2025-11-21 22:53:44,115 | INFO     | extracted standard memory fields from prmon json
[2025-11-21 23:54:18] 2025-11-21 22:53:44,115 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-21 23:54:18] 2025-11-21 22:53:44,144 | INFO     | fitting pss+swap vs Time
[2025-11-21 23:54:18] 2025-11-21 22:53:44,147 | INFO     | sum of square deviations: 1046531384350.9338
[2025-11-21 23:54:18] 2025-11-21 22:53:44,216 | INFO     | sum of deviations: 3839908509483.386
[2025-11-21 23:54:18] 2025-11-21 22:53:44,217 | INFO     | mean x: 1763719866.9733334
[2025-11-21 23:54:18] 2025-11-21 22:53:44,217 | INFO     | mean y: 2862777.634666667
[2025-11-21 23:54:18] 2025-11-21 22:53:44,217 | INFO     | intersect: -6468536959.446486
[2025-11-21 23:54:18] 2025-11-21 22:53:44,219 | INFO     | chi2: 16.716511723444935
[2025-11-21 23:54:18] 2025-11-21 22:53:44,221 | INFO     | sum of square deviations: 1036101593055.0432
[2025-11-21 23:54:18] 2025-11-21 22:53:44,280 | INFO     | sum of deviations: 4351475731845.472
[2025-11-21 23:54:18] 2025-11-21 22:53:44,280 | INFO     | mean x: 1763719714.4782608
[2025-11-21 23:54:18] 2025-11-21 22:53:44,280 | INFO     | mean y: 2870256.5224080267
[2025-11-21 23:54:18] 2025-11-21 22:53:44,280 | INFO     | intersect: -7404495572.054067
[2025-11-21 23:54:18] 2025-11-21 22:53:44,282 | INFO     | chi2: 13.462265138702993
[2025-11-21 23:54:18] 2025-11-21 22:53:44,282 | INFO     | current chi2=13.462265138702993 (change=19.467258711504122 %)
[2025-11-21 23:54:18] 2025-11-21 22:53:44,282 | INFO     | right removable region: 1494
[2025-11-21 23:54:18] 2025-11-21 22:53:44,285 | INFO     | sum of square deviations: 1036100244955.0438
[2025-11-21 23:54:18] 2025-11-21 22:53:44,348 | INFO     | sum of deviations: 3198246536903.5664
[2025-11-21 23:54:18] 2025-11-21 22:53:44,348 | INFO     | mean x: 1763720019.4782608
[2025-11-21 23:54:18] 2025-11-21 22:53:44,348 | INFO     | mean y: 2872158.4635451506
[2025-11-21 23:54:18] 2025-11-21 22:53:44,349 | INFO     | intersect: -5441399736.876652
[2025-11-21 23:54:18] 2025-11-21 22:53:44,355 | INFO     | chi2: 11.89415947584687
[2025-11-21 23:54:18] 2025-11-21 22:53:44,355 | INFO     | current chi2=11.89415947584687 (change=28.84783815773424 %)
[2025-11-21 23:54:18] 2025-11-21 22:53:44,358 | INFO     | sum of square deviations: 1025738641746.5812
[2025-11-21 23:54:18] 2025-11-21 22:53:44,439 | INFO     | sum of deviations: 2680076931384.293
[2025-11-21 23:54:18] 2025-11-21 22:53:44,439 | INFO     | mean x: 1763720171.9832215
[2025-11-21 23:54:18] 2025-11-21 22:53:44,439 | INFO     | mean y: 2879783.0919463085
[2025-11-21 23:54:18] 2025-11-21 22:53:44,439 | INFO     | intersect: -4605414721.929927
[2025-11-21 23:54:18] 2025-11-21 22:53:44,441 | INFO     | chi2: 8.82080820813487
[2025-11-21 23:54:18] 2025-11-21 22:53:44,441 | INFO     | current chi2=8.82080820813487 (change=25.839163111550384 %)
[2025-11-21 23:54:18] 2025-11-21 22:53:44,444 | INFO     | sum of square deviations: 1015446796376.9097
[2025-11-21 23:54:18] 2025-11-21 22:53:44,485 | INFO     | monitor loop #6189: job 0:6891577873 is in state 'finished'
[2025-11-21 23:54:18] 2025-11-21 22:53:44,485 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-21 23:54:18] 2025-11-21 22:53:44,515 | INFO     | sum of deviations: 2520748275900.031
[2025-11-21 23:54:18] 2025-11-21 22:53:44,516 | INFO     | mean x: 1763720324.4848485
[2025-11-21 23:54:18] 2025-11-21 22:53:44,516 | INFO     | mean y: 2882142.0235690237
[2025-11-21 23:54:18] 2025-11-21 22:53:44,516 | INFO     | intersect: -4375382660.207206
[2025-11-21 23:54:18] 2025-11-21 22:53:44,518 | INFO     | chi2: 8.513947868799193
[2025-11-21 23:54:18] 2025-11-21 22:53:44,519 | INFO     | current chi2=8.513947868799193 (change=3.4788233923131933 %)
[2025-11-21 23:54:18] 2025-11-21 22:53:44,519 | INFO     | left removable region: 30
[2025-11-21 23:54:18] 2025-11-21 22:53:44,521 | INFO     | sum of square deviations: 972974650328.8041
[2025-11-21 23:54:18] 2025-11-21 22:53:44,576 | INFO     | sum of deviations: 2933359629616.067
[2025-11-21 23:54:18] 2025-11-21 22:53:44,578 | INFO     | mean x: 1763720598.988388
[2025-11-21 23:54:18] 2025-11-21 22:53:44,578 | INFO     | mean y: 2894579.5922131147
[2025-11-21 23:54:18] 2025-11-21 22:53:44,578 | INFO     | intersect: -5314434912.236218
[2025-11-21 23:54:18] 2025-11-21 22:53:44,580 | INFO     | chi2: 4.387343754464051
[2025-11-21 23:54:18] 2025-11-21 22:53:44,580 | INFO     | current memory leak: 3.01 B/s (using 1464 data points, chi2=4.39)
[2025-11-21 23:54:18] 2025-11-21 22:53:44,583 | INFO     | could have reported an average CPU frequency of 1999 MHz (51 samples)
[2025-11-21 23:54:18] 2025-11-21 22:53:44,584 | INFO     | ..............................
[2025-11-21 23:54:18] 2025-11-21 22:53:44,584 | INFO     | . Timing measurements:
[2025-11-21 23:54:18] 2025-11-21 22:53:44,584 | INFO     | . get job = 0 s
[2025-11-21 23:54:18] 2025-11-21 22:53:44,584 | INFO     | . initial setup = 7 s
[2025-11-21 23:54:18] 2025-11-21 22:53:44,584 | INFO     | . payload setup = 133 s
[2025-11-21 23:54:18] 2025-11-21 22:53:44,584 | INFO     | . stage-in = 0 s
[2025-11-21 23:54:18] 2025-11-21 22:53:44,584 | INFO     | . payload execution = 91610 s
[2025-11-21 23:54:18] 2025-11-21 22:53:44,584 | INFO     | . stage-out = 4 s
[2025-11-21 23:54:18] 2025-11-21 22:53:44,585 | INFO     | . log creation = 1 s
[2025-11-21 23:54:18] 2025-11-21 22:53:44,585 | INFO     | ..............................
[2025-11-21 23:54:18] 2025-11-21 22:53:44,726 | INFO     | 
[2025-11-21 23:54:18] 2025-11-21 22:53:44,727 | INFO     | job summary report
[2025-11-21 23:54:18] 2025-11-21 22:53:44,727 | INFO     | --------------------------------------------------
[2025-11-21 23:54:18] 2025-11-21 22:53:44,727 | INFO     | PanDA job id: 6891577873
[2025-11-21 23:54:18] 2025-11-21 22:53:44,727 | INFO     | task id: 47493068
[2025-11-21 23:54:18] 2025-11-21 22:53:44,727 | INFO     | errors: (none)
[2025-11-21 23:54:18] 2025-11-21 22:53:44,727 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-21 23:54:18] 2025-11-21 22:53:44,727 | INFO     | pilot state: finished 
[2025-11-21 23:54:18] 2025-11-21 22:53:44,727 | INFO     | transexitcode: 0
[2025-11-21 23:54:18] 2025-11-21 22:53:44,727 | INFO     | exeerrorcode: 0
[2025-11-21 23:54:18] 2025-11-21 22:53:44,727 | INFO     | exeerrordiag: 
[2025-11-21 23:54:18] 2025-11-21 22:53:44,728 | INFO     | exitcode: 0
[2025-11-21 23:54:18] 2025-11-21 22:53:44,728 | INFO     | exitmsg: OK
[2025-11-21 23:54:18] 2025-11-21 22:53:44,728 | INFO     | cpuconsumptiontime: 337919 s
[2025-11-21 23:54:18] 2025-11-21 22:53:44,728 | INFO     | nevents: 1000
[2025-11-21 23:54:18] 2025-11-21 22:53:44,728 | INFO     | neventsw: 0
[2025-11-21 23:54:18] 2025-11-21 22:53:44,728 | INFO     | pid: 27012
[2025-11-21 23:54:18] 2025-11-21 22:53:44,728 | INFO     | pgrp: 27012
[2025-11-21 23:54:18] 2025-11-21 22:53:44,728 | INFO     | corecount: 8
[2025-11-21 23:54:18] 2025-11-21 22:53:44,728 | INFO     | event service: False
[2025-11-21 23:54:18] 2025-11-21 22:53:44,728 | INFO     | sizes: {0: 2298569, 1: 2298824, 12: 2298824, 23: 2298852, 34: 2298880, 44: 2298908, 55: 2299064, 66: 2299092, 77: 2299120, 87: 2299466, 91747: 2364083, 91753: 2373
[2025-11-21 23:54:18] 2025-11-21 22:53:44,728 | INFO     | --------------------------------------------------
[2025-11-21 23:54:18] 2025-11-21 22:53:44,728 | INFO     | 
[2025-11-21 23:54:18] 2025-11-21 22:53:44,729 | INFO     | executing command: ls -lF /var/lib/boinc/slots/7
[2025-11-21 23:54:18] 2025-11-21 22:53:44,862 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-21 23:54:18] 2025-11-21 22:53:44,862 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-21 23:54:18] 2025-11-21 22:53:44,862 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-21 23:54:18] 2025-11-21 22:53:44,863 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-21 23:54:18] 2025-11-21 22:53:44,863 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-21 23:54:18] 2025-11-21 22:53:44,863 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-21 23:54:18] 2025-11-21 22:53:44,863 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-21 23:54:18] 2025-11-21 22:53:44,863 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-21 23:54:18] 2025-11-21 22:53:44,863 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-21 23:54:18] 2025-11-21 22:53:44,863 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-21 23:54:18] 2025-11-21 22:53:44,863 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-21 23:54:18] 2025-11-21 22:53:44,864 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-21 23:54:18] 2025-11-21 22:53:44,864 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-21 23:54:18] 2025-11-21 22:53:44,864 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-21 23:54:18] 2025-11-21 22:53:44,864 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-21 23:54:18] 2025-11-21 22:53:44,864 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-21 23:54:18] 2025-11-21 22:53:44,864 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-21 23:54:18] 2025-11-21 22:53:44,864 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-21 23:54:18] 2025-11-21 22:53:44,864 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-21 23:54:18] 2025-11-21 22:53:44,865 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-21 23:54:18] 2025-11-21 22:53:44,865 | INFO     | job 6891577873 has completed (purged errors)
[2025-11-21 23:54:18] 2025-11-21 22:53:44,865 | INFO     | overall cleanup function is called
[2025-11-21 23:54:18] 2025-11-21 22:53:45,910 | INFO     | --- collectZombieJob: --- 10, [27012]
[2025-11-21 23:54:18] 2025-11-21 22:53:45,910 | INFO     | zombie collector waiting for pid 27012
[2025-11-21 23:54:18] 2025-11-21 22:53:45,910 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-21 23:54:18] 2025-11-21 22:53:45,910 | INFO     | collected zombie processes
[2025-11-21 23:54:18] 2025-11-21 22:53:45,910 | INFO     | will attempt to kill all subprocesses of pid=27012
[2025-11-21 23:54:18] 2025-11-21 22:53:46,012 | INFO     | process IDs to be killed: [27012] (in reverse order)
[2025-11-21 23:54:18] 2025-11-21 22:53:46,198 | WARNING  | found no corresponding commands to process id(s)
[2025-11-21 23:54:18] 2025-11-21 22:53:46,199 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-21 23:54:18] 2025-11-21 22:53:46,202 | INFO     | did not find any defunct processes belonging to 27012
[2025-11-21 23:54:18] 2025-11-21 22:53:46,205 | INFO     | did not find any defunct processes belonging to 27012
[2025-11-21 23:54:18] 2025-11-21 22:53:46,211 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-21 23:54:18] 2025-11-21 22:53:46,211 | INFO     | ready for new job
[2025-11-21 23:54:18] 2025-11-21 22:53:46,211 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-21 23:54:18] 2025-11-21 22:53:46,223 | INFO     | ***************************************
[2025-11-21 23:54:18] 2025-11-21 22:53:46,223 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-21 23:54:18] 2025-11-21 22:53:46,223 | INFO     | ***************************************
[2025-11-21 23:54:18] 2025-11-21 22:53:46,223 | INFO     | 
[2025-11-21 23:54:18] 2025-11-21 22:53:46,224 | INFO     | pilot is running in a VM
[2025-11-21 23:54:18] 2025-11-21 22:53:46,224 | INFO     | architecture information:
[2025-11-21 23:54:18] 2025-11-21 22:53:46,226 | INFO     | executing command: cat /etc/os-release
[2025-11-21 23:54:18] 2025-11-21 22:53:46,261 | INFO     | cat /etc/os-release:
[2025-11-21 23:54:18] NAME="CentOS Linux"
[2025-11-21 23:54:18] VERSION="7 (Core)"
[2025-11-21 23:54:18] ID="centos"
[2025-11-21 23:54:18] ID_LIKE="rhel fedora"
[2025-11-21 23:54:18] VERSION_ID="7"
[2025-11-21 23:54:18] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-21 23:54:18] ANSI_COLOR="0;31"
[2025-11-21 23:54:18] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-21 23:54:18] HOME_URL="https://www.centos.org/"
[2025-11-21 23:54:18] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-21 23:54:18] 
[2025-11-21 23:54:18] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-21 23:54:18] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-21 23:54:18] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-21 23:54:18] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-21 23:54:18] 
[2025-11-21 23:54:18] 2025-11-21 22:53:46,261 | INFO     | ***************************************
[2025-11-21 23:54:18] 2025-11-21 22:53:46,765 | INFO     | executing command: df -mP /var/lib/boinc/slots/7
[2025-11-21 23:54:18] 2025-11-21 22:53:46,817 | INFO     | sufficient remaining disk space (493703135232 B)
[2025-11-21 23:54:18] 2025-11-21 22:53:46,818 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-21 23:54:18] 2025-11-21 22:53:46,818 | INFO     | current server update state: UPDATING_FINAL
[2025-11-21 23:54:18] 2025-11-21 22:53:46,818 | INFO     | update_server=False
[2025-11-21 23:54:18] 2025-11-21 22:53:46,818 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-21 23:54:18] 2025-11-21 22:53:46,819 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-21 23:54:18] 2025-11-21 22:53:46,840 | INFO     | [monitor] cgroup control has ended
[2025-11-21 23:54:18] 2025-11-21 22:53:46,861 | INFO     | all job control threads have been joined
[2025-11-21 23:54:18] 2025-11-21 22:53:46,993 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-21 23:54:18] 2025-11-21 22:53:46,993 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-21 23:54:18] 2025-11-21 22:53:46,993 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-21 23:54:18] 2025-11-21 22:53:46,993 | INFO     | will abort loop
[2025-11-21 23:54:18] 2025-11-21 22:53:47,162 | INFO     | all data control threads have been joined
[2025-11-21 23:54:18] 2025-11-21 22:53:47,729 | INFO     | all payload control threads have been joined
[2025-11-21 23:54:18] 2025-11-21 22:53:47,824 | INFO     | [job] retrieve thread has finished
[2025-11-21 23:54:18] 2025-11-21 22:53:47,867 | INFO     | [job] control thread has finished
[2025-11-21 23:54:18] 2025-11-21 22:53:47,999 | INFO     | [job] job monitor thread has finished
[2025-11-21 23:54:18] 2025-11-21 22:53:48,025 | INFO     | [payload] validate_pre thread has finished
[2025-11-21 23:54:18] 2025-11-21 22:53:48,161 | INFO     | [job] validate thread has finished
[2025-11-21 23:54:18] 2025-11-21 22:53:48,161 | INFO     | [payload] execute_payloads thread has finished
[2025-11-21 23:54:18] 2025-11-21 22:53:48,168 | INFO     | [data] control thread has finished
[2025-11-21 23:54:18] 2025-11-21 22:53:48,446 | INFO     | [job] create_data_payload thread has finished
[2025-11-21 23:54:18] 2025-11-21 22:53:48,493 | INFO     | [payload] validate_post thread has finished
[2025-11-21 23:54:18] 2025-11-21 22:53:48,702 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-21 23:54:18] 2025-11-21 22:53:48,735 | INFO     | [payload] control thread has finished
[2025-11-21 23:54:18] 2025-11-21 22:53:48,765 | INFO     | [payload] failed_post thread has finished
[2025-11-21 23:54:18] 2025-11-21 22:53:48,826 | INFO     | [data] copytool_out thread has finished
[2025-11-21 23:54:18] 2025-11-21 22:53:48,996 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-21 23:54:18] 2025-11-21 22:53:49,094 | INFO     | [data] copytool_in thread has finished
[2025-11-21 23:54:18] 2025-11-21 22:53:49,741 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-21 23:54:18] 2025-11-21 22:53:50,747 | INFO     | [job] queue monitor thread has finished
[2025-11-21 23:54:18] 2025-11-21 22:53:52,711 | INFO     | [data] queue_monitor thread has finished
[2025-11-21 23:54:18] 2025-11-21 22:53:52,796 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140029421643584)>', '<ExcThread(monitor, started 140028600637184)>']
[2025-11-21 23:54:18] 2025-11-21 22:53:57,822 | INFO     | all workflow threads have been joined
[2025-11-21 23:54:18] 2025-11-21 22:53:57,822 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-21 23:54:18] 2025-11-21 22:53:57,822 | INFO     | traces error code: 0
[2025-11-21 23:54:18] 2025-11-21 22:53:57,823 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-21 23:54:18] 2025-11-21 22:54:17,043 | INFO     | PID=20385 has CPU usage=2.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-21 23:54:18] 2025-11-21 22:54:17,044 | INFO     | .. there are 9 such processes running
[2025-11-21 23:54:18] 2025-11-21 22:54:17,044 | INFO     | found 0 job(s) in 20 queues
[2025-11-21 23:54:18] 2025-11-21 22:54:17,045 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-21 23:54:18] 2025-11-21 22:54:17,045 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-21 23:54:18] 2025-11-21 22:54:17,045 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-21 23:54:18] 2025-11-21 22:54:17,045 | CRITICAL | thread 'MainThread' is not alive
[2025-11-21 23:54:18] 2025-11-21 22:54:17,045 | INFO     | [monitor] control thread has ended
[2025-11-21 23:54:18] 2025-11-21 22:54:17,333 [wrapper] ==== pilot stdout END ====
[2025-11-21 23:54:18] 2025-11-21 22:54:17,409 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-21 23:54:18] 2025-11-21 22:54:17,416 [wrapper] pilotpid: 20385
[2025-11-21 23:54:18] 2025-11-21 22:54:17,420 [wrapper] Pilot exit status: 0
[2025-11-21 23:54:18] 2025-11-21 22:54:17,499 [wrapper] pandaids: 6891577873
[2025-11-21 23:54:18] 2025-11-21 22:54:17,543 [wrapper] cleanup supervisor_pilot 29044 20386
[2025-11-21 23:54:18] 2025-11-21 22:54:17,561 [wrapper] Test setup, not cleaning
[2025-11-21 23:54:18] 2025-11-21 22:54:17,567 [wrapper] apfmon messages muted
[2025-11-21 23:54:18] 2025-11-21 22:54:17,571 [wrapper] ==== wrapper stdout END ====
[2025-11-21 23:54:18] 2025-11-21 22:54:17,576 [wrapper] ==== wrapper stderr END ====
[2025-11-21 23:54:18]  *** Error codes and diagnostics ***
[2025-11-21 23:54:18]     "exeErrorCode": 0,
[2025-11-21 23:54:18]     "exeErrorDiag": "",
[2025-11-21 23:54:18]     "pilotErrorCode": 0,
[2025-11-21 23:54:18]     "pilotErrorDiag": "",
[2025-11-21 23:54:18]  *** Listing of results directory ***
[2025-11-21 23:54:18] total 1325584
[2025-11-21 23:54:18] -rw-r--r--. 1 boinc boinc    576529 Nov 18 17:45 pilot3.tar.gz
[2025-11-21 23:54:18] -rw-r--r--. 1 boinc boinc      5112 Nov 18 17:48 queuedata.json
[2025-11-21 23:54:18] -rwx------. 1 boinc boinc     36292 Nov 18 17:49 runpilot2-wrapper.sh
[2025-11-21 23:54:18] -rw-r--r--. 1 boinc boinc       100 Nov 20 22:17 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-21 23:54:18] -rwxr-xr-x. 1 boinc boinc      7986 Nov 20 22:17 run_atlas
[2025-11-21 23:54:18] -rw-r--r--. 1 boinc boinc       105 Nov 20 22:17 job.xml
[2025-11-21 23:54:18] -rw-r--r--. 2 boinc boinc 408380034 Nov 20 22:17 EVNT.47493065._000383.pool.root.1
[2025-11-21 23:54:18] -rw-r--r--. 2 boinc boinc     15120 Nov 20 22:17 start_atlas.sh
[2025-11-21 23:54:18] drwxrwx--x. 2 boinc boinc        68 Nov 20 22:17 shared
[2025-11-21 23:54:18] -rw-r--r--. 2 boinc boinc    590086 Nov 20 22:17 input.tar.gz
[2025-11-21 23:54:18] -rw-r--r--. 1 boinc boinc      6390 Nov 20 22:17 init_data.xml
[2025-11-21 23:54:18] -rw-r--r--. 1 boinc boinc         0 Nov 20 22:17 boinc_lockfile
[2025-11-21 23:54:18] -rw-r--r--. 1 boinc boinc      2773 Nov 20 22:17 pandaJob.out
[2025-11-21 23:54:18] -rw-------. 1 boinc boinc    989440 Nov 20 22:21 agis_schedconf.cvmfs.json
[2025-11-21 23:54:18] drwx------. 5 boinc boinc      4096 Nov 20 22:21 pilot3
[2025-11-21 23:54:18] -rw-r--r--. 1 boinc boinc       533 Nov 21 23:37 boinc_task_state.xml
[2025-11-21 23:54:18] -rw-------. 1 boinc boinc 915406468 Nov 21 23:52 HITS.47493068._003827.pool.root.1
[2025-11-21 23:54:18] -rw-------. 1 boinc boinc      1034 Nov 21 23:53 memory_monitor_summary.json
[2025-11-21 23:54:18] -rw-------. 1 boinc boinc   1526164 Nov 21 23:53 agis_ddmendpoints.agis.ALL.json
[2025-11-21 23:54:18] -rw-------. 1 boinc boinc   2577024 Nov 21 23:53 log.47493068._003827.job.log.tgz.1
[2025-11-21 23:54:18] -rw-------. 1 boinc boinc      8628 Nov 21 23:53 heartbeat.json
[2025-11-21 23:54:18] -rw-r--r--. 1 boinc boinc        29 Nov 21 23:53 wrapper_checkpoint.txt
[2025-11-21 23:54:18] -rw-r--r--. 1 boinc boinc      8192 Nov 21 23:53 boinc_mmap_file
[2025-11-21 23:54:18] -rw-------. 1 boinc boinc       890 Nov 21 23:54 pilotlog.txt
[2025-11-21 23:54:18] -rw-------. 1 boinc boinc        95 Nov 21 23:54 pilot_heartbeat.json
[2025-11-21 23:54:18] -rw-------. 1 boinc boinc  12276014 Nov 21 23:54 log.47493068._003827.job.log.1
[2025-11-21 23:54:18] -rw-------. 1 boinc boinc       353 Nov 21 23:54 output.list
[2025-11-21 23:54:18] -rw-r--r--. 1 boinc boinc       620 Nov 21 23:54 runtime_log
[2025-11-21 23:54:18] -rw-------. 1 boinc boinc  14868480 Nov 21 23:54 result.tar.gz
[2025-11-21 23:54:18] -rw-r--r--. 1 boinc boinc      8703 Nov 21 23:54 runtime_log.err
[2025-11-21 23:54:18] -rw-------. 1 boinc boinc       662 Nov 21 23:54 63IODmF4df8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmZtFKDmfmQDLo.diag
[2025-11-21 23:54:18] -rw-r--r--. 1 boinc boinc     20950 Nov 21 23:54 stderr.txt
[2025-11-21 23:54:18] HITS file was successfully produced:
[2025-11-21 23:54:18] -rw-------. 1 boinc boinc 915406468 Nov 21 23:52 shared/HITS.pool.root.1
[2025-11-21 23:54:18]  *** Contents of shared directory: ***
[2025-11-21 23:54:18] total 1307880
[2025-11-21 23:54:18] -rw-r--r--. 2 boinc boinc 408380034 Nov 20 22:17 ATLAS.root_0
[2025-11-21 23:54:18] -rw-r--r--. 2 boinc boinc     15120 Nov 20 22:17 start_atlas.sh
[2025-11-21 23:54:18] -rw-r--r--. 2 boinc boinc    590086 Nov 20 22:17 input.tar.gz
[2025-11-21 23:54:18] -rw-------. 1 boinc boinc 915406468 Nov 21 23:52 HITS.pool.root.1
[2025-11-21 23:54:18] -rw-------. 1 boinc boinc  14868480 Nov 21 23:54 result.tar.gz
23:54:20 (16626): run_atlas exited; CPU time 338384.873662
23:54:20 (16626): called boinc_finish(0)

</stderr_txt>
]]>

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