Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
20:39:50 (16783): wrapper (7.7.26015): starting
20:39:50 (16783): wrapper: running run_atlas (--nthreads 8)
[2025-11-19 20:39:50] Arguments: --nthreads 8
[2025-11-19 20:39:50] Threads: 8
[2025-11-19 20:39:50] Checking for CVMFS
[2025-11-19 20:39:51] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-19 20:39:52] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-19 20:39:52] Running cvmfs_config stat atlas.cern.ch
[2025-11-19 20:39:52] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-19 20:39:52] 2.11.2.0 20802 75890 103192 153055 2 229 15031276 25165825 4397 130560 7 22007452 99.850 13841982 2093 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-19 20:39:52] CVMFS is ok
[2025-11-19 20:39:53] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-19 20:39:53] Checking for apptainer binary...
[2025-11-19 20:39:53] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-19 20:39:53] Running /usr/bin/apptainer --version
[2025-11-19 20:39:53] apptainer version 1.3.2-1.el7
[2025-11-19 20:39:53] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-19 20:39:56] cg-vwn369.simple-grid.lan
[2025-11-19 20:39:56] apptainer works
[2025-11-19 20:39:56] Set ATHENA_PROC_NUMBER=8
[2025-11-19 20:39:56] Set ATHENA_CORE_NUMBER=8
[2025-11-19 20:39:56] Starting ATLAS job with PandaID=6891569860
[2025-11-19 20:39:56] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/7 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-20 22:17:33]  *** The last 200 lines of the pilot log: ***
[2025-11-20 22:17:33] 2025-11-20 21:16:32,350 | INFO     | fitting pss+swap vs Time
[2025-11-20 22:17:33] 2025-11-20 21:16:32,352 | INFO     | sum of square deviations: 1046531053956.3263
[2025-11-20 22:17:33] 2025-11-20 21:16:32,416 | INFO     | sum of deviations: 5284861652580.733
[2025-11-20 22:17:33] 2025-11-20 21:16:32,417 | INFO     | mean x: 1763627631.6646667
[2025-11-20 22:17:33] 2025-11-20 21:16:32,417 | INFO     | mean y: 2858826.578
[2025-11-20 22:17:33] 2025-11-20 21:16:32,417 | INFO     | intersect: -8903258201.465145
[2025-11-20 22:17:33] 2025-11-20 21:16:32,419 | INFO     | chi2: 16.828878759485818
[2025-11-20 22:17:33] 2025-11-20 21:16:32,421 | INFO     | sum of square deviations: 1036101121449.5238
[2025-11-20 22:17:33] 2025-11-20 21:16:32,488 | INFO     | sum of deviations: 5803876631798.227
[2025-11-20 22:17:33] 2025-11-20 21:16:32,488 | INFO     | mean x: 1763627479.168562
[2025-11-20 22:17:33] 2025-11-20 21:16:32,488 | INFO     | mean y: 2866415.272909699
[2025-11-20 22:17:33] 2025-11-20 21:16:32,489 | INFO     | intersect: -9876358789.332079
[2025-11-20 22:17:33] 2025-11-20 21:16:32,490 | INFO     | chi2: 13.51602623097969
[2025-11-20 22:17:33] 2025-11-20 21:16:32,491 | INFO     | current chi2=13.51602623097969 (change=19.685521393626978 %)
[2025-11-20 22:17:33] 2025-11-20 21:16:32,491 | INFO     | right removable region: 1494
[2025-11-20 22:17:33] 2025-11-20 21:16:32,493 | INFO     | sum of square deviations: 1036100055779.5239
[2025-11-20 22:17:33] 2025-11-20 21:16:32,556 | INFO     | sum of deviations: 4652537197528.3
[2025-11-20 22:17:33] 2025-11-20 21:16:32,556 | INFO     | mean x: 1763627784.168562
[2025-11-20 22:17:33] 2025-11-20 21:16:32,556 | INFO     | mean y: 2868070.8361204015
[2025-11-20 22:17:33] 2025-11-20 21:16:32,556 | INFO     | intersect: -7916583166.202221
[2025-11-20 22:17:33] 2025-11-20 21:16:32,558 | INFO     | chi2: 12.035385328284786
[2025-11-20 22:17:33] 2025-11-20 21:16:32,558 | INFO     | current chi2=12.035385328284786 (change=28.48373619959153 %)
[2025-11-20 22:17:33] 2025-11-20 21:16:32,561 | INFO     | sum of square deviations: 1025738593790.1715
[2025-11-20 22:17:33] 2025-11-20 21:16:32,622 | INFO     | time since job start (92028s) is within the limit (172800.0s)
[2025-11-20 22:17:33] 2025-11-20 21:16:32,628 | INFO     | sum of deviations: 4096494402685.471
[2025-11-20 22:17:33] 2025-11-20 21:16:32,635 | INFO     | mean x: 1763627936.6724832
[2025-11-20 22:17:33] 2025-11-20 21:16:32,635 | INFO     | mean y: 2876253.867785235
[2025-11-20 22:17:33] 2025-11-20 21:16:32,635 | INFO     | intersect: -7040528386.200249
[2025-11-20 22:17:33] 2025-11-20 21:16:32,637 | INFO     | chi2: 8.447359660438213
[2025-11-20 22:17:33] 2025-11-20 21:16:32,638 | INFO     | current chi2=8.447359660438213 (change=29.812304051572212 %)
[2025-11-20 22:17:33] 2025-11-20 21:16:32,640 | INFO     | sum of square deviations: 1015446435425.7756
[2025-11-20 22:17:33] 2025-11-20 21:16:32,703 | INFO     | sum of deviations: 3599973208325.145
[2025-11-20 22:17:33] 2025-11-20 21:16:32,704 | INFO     | mean x: 1763628089.176431
[2025-11-20 22:17:33] 2025-11-20 21:16:32,704 | INFO     | mean y: 2883610.507070707
[2025-11-20 22:17:33] 2025-11-20 21:16:32,704 | INFO     | intersect: -6249552410.722042
[2025-11-20 22:17:33] 2025-11-20 21:16:32,706 | INFO     | chi2: 5.661320272833492
[2025-11-20 22:17:33] 2025-11-20 21:16:32,706 | INFO     | current chi2=5.661320272833492 (change=32.98118583316237 %)
[2025-11-20 22:17:33] 2025-11-20 21:16:32,708 | INFO     | sum of square deviations: 1005223619516.9082
[2025-11-20 22:17:33] 2025-11-20 21:16:32,774 | INFO     | sum of deviations: 3399247838965.068
[2025-11-20 22:17:33] 2025-11-20 21:16:32,775 | INFO     | mean x: 1763628241.6783783
[2025-11-20 22:17:33] 2025-11-20 21:16:32,775 | INFO     | mean y: 2886601.995945946
[2025-11-20 22:17:33] 2025-11-20 21:16:32,775 | INFO     | intersect: -5960969969.68318
[2025-11-20 22:17:33] 2025-11-20 21:16:32,777 | INFO     | chi2: 5.153127893339326
[2025-11-20 22:17:33] 2025-11-20 21:16:32,777 | INFO     | current chi2=5.153127893339326 (change=8.976570040256982 %)
[2025-11-20 22:17:33] 2025-11-20 21:16:32,777 | INFO     | left removable region: 40
[2025-11-20 22:17:33] 2025-11-20 21:16:32,779 | INFO     | sum of square deviations: 953171525679.202
[2025-11-20 22:17:33] 2025-11-20 21:16:32,840 | INFO     | sum of deviations: 3634351426324.6865
[2025-11-20 22:17:33] 2025-11-20 21:16:32,841 | INFO     | mean x: 1763628668.6822557
[2025-11-20 22:17:33] 2025-11-20 21:16:32,841 | INFO     | mean y: 2902248.984181568
[2025-11-20 22:17:33] 2025-11-20 21:16:32,842 | INFO     | intersect: -6721644377.56883
[2025-11-20 22:17:33] 2025-11-20 21:16:32,843 | INFO     | chi2: 0.7401757601130858
[2025-11-20 22:17:33] 2025-11-20 21:16:32,844 | INFO     | current memory leak: 3.81 B/s (using 1454 data points, chi2=0.74)
[2025-11-20 22:17:33] 2025-11-20 21:16:32,846 | INFO     | could have reported an average CPU frequency of 1999 MHz (51 samples)
[2025-11-20 22:17:33] 2025-11-20 21:16:32,846 | INFO     | ..............................
[2025-11-20 22:17:33] 2025-11-20 21:16:32,846 | INFO     | . Timing measurements:
[2025-11-20 22:17:33] 2025-11-20 21:16:32,847 | INFO     | . get job = 0 s
[2025-11-20 22:17:33] 2025-11-20 21:16:32,847 | INFO     | . initial setup = 6 s
[2025-11-20 22:17:33] 2025-11-20 21:16:32,847 | INFO     | . payload setup = 177 s
[2025-11-20 22:17:33] 2025-11-20 21:16:32,847 | INFO     | . stage-in = 0 s
[2025-11-20 22:17:33] 2025-11-20 21:16:32,847 | INFO     | . payload execution = 91624 s
[2025-11-20 22:17:33] 2025-11-20 21:16:32,847 | INFO     | . stage-out = 4 s
[2025-11-20 22:17:33] 2025-11-20 21:16:32,847 | INFO     | . log creation = 1 s
[2025-11-20 22:17:33] 2025-11-20 21:16:32,847 | INFO     | ..............................
[2025-11-20 22:17:33] 2025-11-20 21:16:32,976 | INFO     | 
[2025-11-20 22:17:33] 2025-11-20 21:16:32,976 | INFO     | job summary report
[2025-11-20 22:17:33] 2025-11-20 21:16:32,976 | INFO     | --------------------------------------------------
[2025-11-20 22:17:33] 2025-11-20 21:16:32,976 | INFO     | PanDA job id: 6891569860
[2025-11-20 22:17:33] 2025-11-20 21:16:32,976 | INFO     | task id: 47493068
[2025-11-20 22:17:33] 2025-11-20 21:16:32,976 | INFO     | errors: (none)
[2025-11-20 22:17:33] 2025-11-20 21:16:32,976 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-20 22:17:33] 2025-11-20 21:16:32,977 | INFO     | pilot state: finished 
[2025-11-20 22:17:33] 2025-11-20 21:16:32,977 | INFO     | transexitcode: 0
[2025-11-20 22:17:33] 2025-11-20 21:16:32,977 | INFO     | exeerrorcode: 0
[2025-11-20 22:17:33] 2025-11-20 21:16:32,977 | INFO     | exeerrordiag: 
[2025-11-20 22:17:33] 2025-11-20 21:16:32,977 | INFO     | exitcode: 0
[2025-11-20 22:17:33] 2025-11-20 21:16:32,977 | INFO     | exitmsg: OK
[2025-11-20 22:17:33] 2025-11-20 21:16:32,977 | INFO     | cpuconsumptiontime: 337898 s
[2025-11-20 22:17:33] 2025-11-20 21:16:32,977 | INFO     | nevents: 1000
[2025-11-20 22:17:33] 2025-11-20 21:16:32,977 | INFO     | neventsw: 0
[2025-11-20 22:17:33] 2025-11-20 21:16:32,977 | INFO     | pid: 27092
[2025-11-20 22:17:33] 2025-11-20 21:16:32,977 | INFO     | pgrp: 27092
[2025-11-20 22:17:33] 2025-11-20 21:16:32,978 | INFO     | corecount: 8
[2025-11-20 22:17:33] 2025-11-20 21:16:32,978 | INFO     | event service: False
[2025-11-20 22:17:33] 2025-11-20 21:16:32,978 | INFO     | sizes: {0: 2296366, 1: 2297051, 2: 2297250, 13: 2297250, 23: 2297306, 34: 2297334, 45: 2297490, 56: 2297518, 66: 2297546, 77: 2297574, 88: 2297630, 99: 2297938, 10
[2025-11-20 22:17:33] 2025-11-20 21:16:32,978 | INFO     | --------------------------------------------------
[2025-11-20 22:17:33] 2025-11-20 21:16:32,978 | INFO     | 
[2025-11-20 22:17:33] 2025-11-20 21:16:32,978 | INFO     | executing command: ls -lF /var/lib/boinc/slots/7
[2025-11-20 22:17:33] 2025-11-20 21:16:33,270 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-20 22:17:33] 2025-11-20 21:16:33,271 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-20 22:17:33] 2025-11-20 21:16:33,271 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-20 22:17:33] 2025-11-20 21:16:33,271 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-20 22:17:33] 2025-11-20 21:16:33,271 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-20 22:17:33] 2025-11-20 21:16:33,271 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-20 22:17:33] 2025-11-20 21:16:33,271 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-20 22:17:33] 2025-11-20 21:16:33,272 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-20 22:17:33] 2025-11-20 21:16:33,272 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-20 22:17:33] 2025-11-20 21:16:33,272 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-20 22:17:33] 2025-11-20 21:16:33,272 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-20 22:17:33] 2025-11-20 21:16:33,272 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-20 22:17:33] 2025-11-20 21:16:33,272 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-20 22:17:33] 2025-11-20 21:16:33,272 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-20 22:17:33] 2025-11-20 21:16:33,272 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-20 22:17:33] 2025-11-20 21:16:33,272 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-20 22:17:33] 2025-11-20 21:16:33,273 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-20 22:17:33] 2025-11-20 21:16:33,273 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-20 22:17:33] 2025-11-20 21:16:33,273 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-20 22:17:33] 2025-11-20 21:16:33,273 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-20 22:17:33] 2025-11-20 21:16:33,273 | INFO     | job 6891569860 has completed (purged errors)
[2025-11-20 22:17:33] 2025-11-20 21:16:33,273 | INFO     | overall cleanup function is called
[2025-11-20 22:17:33] 2025-11-20 21:16:34,294 | INFO     | --- collectZombieJob: --- 10, [27092]
[2025-11-20 22:17:33] 2025-11-20 21:16:34,294 | INFO     | zombie collector waiting for pid 27092
[2025-11-20 22:17:33] 2025-11-20 21:16:34,294 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-20 22:17:33] 2025-11-20 21:16:34,294 | INFO     | collected zombie processes
[2025-11-20 22:17:33] 2025-11-20 21:16:34,294 | INFO     | will attempt to kill all subprocesses of pid=27092
[2025-11-20 22:17:33] 2025-11-20 21:16:34,410 | INFO     | process IDs to be killed: [27092] (in reverse order)
[2025-11-20 22:17:33] 2025-11-20 21:16:34,591 | WARNING  | found no corresponding commands to process id(s)
[2025-11-20 22:17:33] 2025-11-20 21:16:34,592 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-20 22:17:33] 2025-11-20 21:16:34,595 | INFO     | did not find any defunct processes belonging to 27092
[2025-11-20 22:17:33] 2025-11-20 21:16:34,598 | INFO     | did not find any defunct processes belonging to 27092
[2025-11-20 22:17:33] 2025-11-20 21:16:34,601 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-20 22:17:33] 2025-11-20 21:16:34,601 | INFO     | ready for new job
[2025-11-20 22:17:33] 2025-11-20 21:16:34,602 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-20 22:17:33] 2025-11-20 21:16:34,608 | INFO     | ***************************************
[2025-11-20 22:17:33] 2025-11-20 21:16:34,608 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-20 22:17:33] 2025-11-20 21:16:34,608 | INFO     | ***************************************
[2025-11-20 22:17:33] 2025-11-20 21:16:34,609 | INFO     | 
[2025-11-20 22:17:33] 2025-11-20 21:16:34,609 | INFO     | pilot is running in a VM
[2025-11-20 22:17:33] 2025-11-20 21:16:34,609 | INFO     | architecture information:
[2025-11-20 22:17:33] 2025-11-20 21:16:34,611 | INFO     | executing command: cat /etc/os-release
[2025-11-20 22:17:33] 2025-11-20 21:16:34,644 | INFO     | cat /etc/os-release:
[2025-11-20 22:17:33] NAME="CentOS Linux"
[2025-11-20 22:17:33] VERSION="7 (Core)"
[2025-11-20 22:17:33] ID="centos"
[2025-11-20 22:17:33] ID_LIKE="rhel fedora"
[2025-11-20 22:17:33] VERSION_ID="7"
[2025-11-20 22:17:33] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-20 22:17:33] ANSI_COLOR="0;31"
[2025-11-20 22:17:33] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-20 22:17:33] HOME_URL="https://www.centos.org/"
[2025-11-20 22:17:33] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-20 22:17:33] 
[2025-11-20 22:17:33] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-20 22:17:33] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-20 22:17:33] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-20 22:17:33] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-20 22:17:33] 
[2025-11-20 22:17:33] 2025-11-20 21:16:34,644 | INFO     | ***************************************
[2025-11-20 22:17:33] 2025-11-20 21:16:35,148 | INFO     | executing command: df -mP /var/lib/boinc/slots/7
[2025-11-20 22:17:33] 2025-11-20 21:16:35,228 | INFO     | sufficient remaining disk space (494567161856 B)
[2025-11-20 22:17:33] 2025-11-20 21:16:35,228 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-20 22:17:33] 2025-11-20 21:16:35,229 | INFO     | current server update state: UPDATING_FINAL
[2025-11-20 22:17:33] 2025-11-20 21:16:35,229 | INFO     | update_server=False
[2025-11-20 22:17:33] 2025-11-20 21:16:35,229 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-20 22:17:33] 2025-11-20 21:16:35,229 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-20 22:17:33] 2025-11-20 21:16:35,229 | INFO     | aborting loop
[2025-11-20 22:17:33] 2025-11-20 21:16:35,229 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-20 22:17:33] 2025-11-20 21:16:35,671 | INFO     | all data control threads have been joined
[2025-11-20 22:17:33] 2025-11-20 21:16:36,234 | INFO     | [job] job monitor thread has finished
[2025-11-20 22:17:33] 2025-11-20 21:16:36,234 | INFO     | [job] retrieve thread has finished
[2025-11-20 22:17:33] 2025-11-20 21:16:36,240 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-20 22:17:33] 2025-11-20 21:16:36,297 | INFO     | [job] create_data_payload thread has finished
[2025-11-20 22:17:33] 2025-11-20 21:16:36,361 | INFO     | [payload] validate_post thread has finished
[2025-11-20 22:17:33] 2025-11-20 21:16:36,446 | INFO     | all payload control threads have been joined
[2025-11-20 22:17:33] 2025-11-20 21:16:36,677 | INFO     | [data] control thread has finished
[2025-11-20 22:17:33] 2025-11-20 21:16:36,761 | INFO     | [payload] execute_payloads thread has finished
[2025-11-20 22:17:33] 2025-11-20 21:16:36,943 | INFO     | all job control threads have been joined
[2025-11-20 22:17:33] 2025-11-20 21:16:37,095 | INFO     | [job] validate thread has finished
[2025-11-20 22:17:33] 2025-11-20 21:16:37,120 | INFO     | [payload] validate_pre thread has finished
[2025-11-20 22:17:33] 2025-11-20 21:16:37,237 | INFO     | [data] copytool_out thread has finished
[2025-11-20 22:17:33] 2025-11-20 21:16:37,338 | INFO     | [data] copytool_in thread has finished
[2025-11-20 22:17:33] 2025-11-20 21:16:37,452 | INFO     | [payload] control thread has finished
[2025-11-20 22:17:33] 2025-11-20 21:16:37,585 | INFO     | [payload] failed_post thread has finished
[2025-11-20 22:17:33] 2025-11-20 21:16:37,770 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-20 22:17:33] 2025-11-20 21:16:37,949 | INFO     | [job] control thread has finished
[2025-11-20 22:17:33] 2025-11-20 21:16:37,989 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-20 22:17:33] 2025-11-20 21:16:38,995 | INFO     | [job] queue monitor thread has finished
[2025-11-20 22:17:33] 2025-11-20 21:16:41,779 | INFO     | [data] queue_monitor thread has finished
[2025-11-20 22:17:33] 2025-11-20 21:17:05,851 | INFO     | PID=20527 has CPU usage=4.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-20 22:17:33] 2025-11-20 21:17:05,851 | INFO     | .. there are 9 such processes running
[2025-11-20 22:17:33] 2025-11-20 21:17:05,851 | INFO     | found 0 job(s) in 20 queues
[2025-11-20 22:17:33] 2025-11-20 21:17:05,851 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-20 22:17:33] 2025-11-20 21:17:05,852 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-20 22:17:33] 2025-11-20 21:17:25,553 | INFO     | [monitor] cgroup control has ended
[2025-11-20 22:17:33] 2025-11-20 21:17:26,559 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140536370501440)>', '<ExcThread(monitor, started 140535423563520)>']
[2025-11-20 22:17:33] 2025-11-20 21:17:26,978 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-20 22:17:33] 2025-11-20 21:17:26,978 | INFO     | [monitor] control thread has ended
[2025-11-20 22:17:33] 2025-11-20 21:17:31,586 | INFO     | all workflow threads have been joined
[2025-11-20 22:17:33] 2025-11-20 21:17:31,586 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-20 22:17:33] 2025-11-20 21:17:31,587 | INFO     | traces error code: 0
[2025-11-20 22:17:33] 2025-11-20 21:17:31,587 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-20 22:17:33] 2025-11-20 21:17:31,826 [wrapper] ==== pilot stdout END ====
[2025-11-20 22:17:33] 2025-11-20 21:17:31,835 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-20 22:17:33] 2025-11-20 21:17:31,885 [wrapper] pilotpid: 20527
[2025-11-20 22:17:33] 2025-11-20 21:17:31,921 [wrapper] Pilot exit status: 0
[2025-11-20 22:17:33] 2025-11-20 21:17:32,208 [wrapper] pandaids: 6891569860
[2025-11-20 22:17:33] 2025-11-20 21:17:32,321 [wrapper] cleanup supervisor_pilot 20788 20528
[2025-11-20 22:17:33] 2025-11-20 21:17:32,405 [wrapper] Test setup, not cleaning
[2025-11-20 22:17:33] 2025-11-20 21:17:32,430 [wrapper] apfmon messages muted
[2025-11-20 22:17:33] 2025-11-20 21:17:32,433 [wrapper] ==== wrapper stdout END ====
[2025-11-20 22:17:33] 2025-11-20 21:17:32,437 [wrapper] ==== wrapper stderr END ====
[2025-11-20 22:17:33]  *** Error codes and diagnostics ***
[2025-11-20 22:17:33]     "exeErrorCode": 0,
[2025-11-20 22:17:33]     "exeErrorDiag": "",
[2025-11-20 22:17:33]     "pilotErrorCode": 0,
[2025-11-20 22:17:33]     "pilotErrorDiag": "",
[2025-11-20 22:17:33]  *** Listing of results directory ***
[2025-11-20 22:17:33] total 1331896
[2025-11-20 22:17:33] -rw-r--r--. 1 boinc boinc    576529 Nov 18 16:15 pilot3.tar.gz
[2025-11-20 22:17:33] -rw-r--r--. 1 boinc boinc      5112 Nov 18 16:32 queuedata.json
[2025-11-20 22:17:33] -rwx------. 1 boinc boinc     36292 Nov 18 16:34 runpilot2-wrapper.sh
[2025-11-20 22:17:33] -rw-r--r--. 1 boinc boinc       100 Nov 19 20:39 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-20 22:17:33] -rwxr-xr-x. 1 boinc boinc      7986 Nov 19 20:39 run_atlas
[2025-11-20 22:17:33] -rw-r--r--. 1 boinc boinc       105 Nov 19 20:39 job.xml
[2025-11-20 22:17:33] -rw-r--r--. 2 boinc boinc 408476014 Nov 19 20:39 EVNT.47493065._000217.pool.root.1
[2025-11-20 22:17:33] -rw-r--r--. 1 boinc boinc      6390 Nov 19 20:39 init_data.xml
[2025-11-20 22:17:33] -rw-r--r--. 2 boinc boinc     15120 Nov 19 20:39 start_atlas.sh
[2025-11-20 22:17:33] drwxrwx--x. 2 boinc boinc        68 Nov 19 20:39 shared
[2025-11-20 22:17:33] -rw-r--r--. 2 boinc boinc    590100 Nov 19 20:39 input.tar.gz
[2025-11-20 22:17:33] -rw-r--r--. 1 boinc boinc         0 Nov 19 20:39 boinc_lockfile
[2025-11-20 22:17:33] -rw-r--r--. 1 boinc boinc      2770 Nov 19 20:39 pandaJob.out
[2025-11-20 22:17:33] -rw-------. 1 boinc boinc    989451 Nov 19 20:42 agis_schedconf.cvmfs.json
[2025-11-20 22:17:33] drwx------. 5 boinc boinc      4096 Nov 19 20:42 pilot3
[2025-11-20 22:17:33] -rw-r--r--. 1 boinc boinc       533 Nov 20 22:05 boinc_task_state.xml
[2025-11-20 22:17:33] -rw-------. 1 boinc boinc 921742836 Nov 20 22:15 HITS.47493068._002161.pool.root.1
[2025-11-20 22:17:33] -rw-------. 1 boinc boinc      1033 Nov 20 22:16 memory_monitor_summary.json
[2025-11-20 22:17:33] -rw-------. 1 boinc boinc   1526164 Nov 20 22:16 agis_ddmendpoints.agis.ALL.json
[2025-11-20 22:17:33] -rw-------. 1 boinc boinc   2578945 Nov 20 22:16 log.47493068._002161.job.log.tgz.1
[2025-11-20 22:17:33] -rw-------. 1 boinc boinc        95 Nov 20 22:16 pilot_heartbeat.json
[2025-11-20 22:17:33] -rw-------. 1 boinc boinc      7940 Nov 20 22:16 heartbeat.json
[2025-11-20 22:17:33] -rw-r--r--. 1 boinc boinc      8192 Nov 20 22:17 boinc_mmap_file
[2025-11-20 22:17:33] -rw-r--r--. 1 boinc boinc        29 Nov 20 22:17 wrapper_checkpoint.txt
[2025-11-20 22:17:33] -rw-------. 1 boinc boinc      4884 Nov 20 22:17 pilotlog.txt
[2025-11-20 22:17:33] -rw-------. 1 boinc boinc  12291688 Nov 20 22:17 log.47493068._002161.job.log.1
[2025-11-20 22:17:33] -rw-------. 1 boinc boinc       353 Nov 20 22:17 output.list
[2025-11-20 22:17:33] -rw-r--r--. 1 boinc boinc       620 Nov 20 22:17 runtime_log
[2025-11-20 22:17:33] -rw-------. 1 boinc boinc  14888960 Nov 20 22:17 result.tar.gz
[2025-11-20 22:17:33] -rw-r--r--. 1 boinc boinc      8703 Nov 20 22:17 runtime_log.err
[2025-11-20 22:17:33] -rw-------. 1 boinc boinc       662 Nov 20 22:17 AjPKDmhtcf8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmNXFKDmXfxUKn.diag
[2025-11-20 22:17:33] -rw-r--r--. 1 boinc boinc     20832 Nov 20 22:17 stderr.txt
[2025-11-20 22:17:33] HITS file was successfully produced:
[2025-11-20 22:17:33] -rw-------. 1 boinc boinc 921742836 Nov 20 22:15 shared/HITS.pool.root.1
[2025-11-20 22:17:33]  *** Contents of shared directory: ***
[2025-11-20 22:17:33] total 1314180
[2025-11-20 22:17:33] -rw-r--r--. 2 boinc boinc 408476014 Nov 19 20:39 ATLAS.root_0
[2025-11-20 22:17:33] -rw-r--r--. 2 boinc boinc     15120 Nov 19 20:39 start_atlas.sh
[2025-11-20 22:17:33] -rw-r--r--. 2 boinc boinc    590100 Nov 19 20:39 input.tar.gz
[2025-11-20 22:17:33] -rw-------. 1 boinc boinc 921742836 Nov 20 22:15 HITS.pool.root.1
[2025-11-20 22:17:33] -rw-------. 1 boinc boinc  14888960 Nov 20 22:17 result.tar.gz
22:17:34 (16783): run_atlas exited; CPU time 338525.790323
22:17:34 (16783): called boinc_finish(0)

</stderr_txt>
]]>

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