Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:01:28 (3191261): wrapper (7.7.26015): starting
00:01:28 (3191261): wrapper: running run_atlas (--nthreads 12)
[2025-11-19 00:01:28] Arguments: --nthreads 12
[2025-11-19 00:01:28] Threads: 12
[2025-11-19 00:01:28] Checking for CVMFS
[2025-11-19 00:01:28] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-19 00:01:29] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-19 00:01:29] Running cvmfs_config stat atlas.cern.ch
[2025-11-19 00:01:30] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-19 00:01:30] 2.13.2.0 10183 23315 182624 153030 0 313 25027656 39288832 9522 16776704 0 10580176 99.337 14734157 37443 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-19 00:01:30] CVMFS is ok
[2025-11-19 00:01:30] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-19 00:01:30] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-19 00:01:30] Further information can be found at the LHC@home message board.
[2025-11-19 00:01:30] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-19 00:01:30] Checking for apptainer binary...
[2025-11-19 00:01:30] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-19 00:01:30] Running /usr/bin/apptainer --version
[2025-11-19 00:01:30] apptainer version 1.4.4-1.el9
[2025-11-19 00:01:30] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-19 00:01:31] c-210-5.aglt2.org
[2025-11-19 00:01:31] apptainer works
[2025-11-19 00:01:31] Set ATHENA_PROC_NUMBER=12
[2025-11-19 00:01:31] Set ATHENA_CORE_NUMBER=12
[2025-11-19 00:01:31] Starting ATLAS job with PandaID=6891572110
[2025-11-19 00:01:31] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-20 15:21:19]  *** The last 200 lines of the pilot log: ***
[2025-11-20 15:21:19] 2025-11-20 20:20:24,679 | INFO     | time since job start (141466s) is within the limit (172800.0s)
[2025-11-20 15:21:19] 2025-11-20 20:20:25,205 | INFO     | monitor loop #7971: job 0:6891572110 is in state 'finished'
[2025-11-20 15:21:19] 2025-11-20 20:20:25,210 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-20 15:21:19] 2025-11-20 20:20:26,687 | INFO     | time since job start (141468s) is within the limit (172800.0s)
[2025-11-20 15:21:19] 2025-11-20 20:20:27,714 | INFO     | monitor loop #7972: job 0:6891572110 is in state 'finished'
[2025-11-20 15:21:19] 2025-11-20 20:20:27,715 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-20 15:21:19] 2025-11-20 20:20:28,696 | INFO     | time since job start (141470s) is within the limit (172800.0s)
[2025-11-20 15:21:19] 2025-11-20 20:20:30,219 | INFO     | monitor loop #7973: job 0:6891572110 is in state 'finished'
[2025-11-20 15:21:19] 2025-11-20 20:20:30,224 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-20 15:21:19] 2025-11-20 20:20:30,703 | INFO     | time since job start (141472s) is within the limit (172800.0s)
[2025-11-20 15:21:19] 2025-11-20 20:20:32,712 | INFO     | time since job start (141474s) is within the limit (172800.0s)
[2025-11-20 15:21:19] 2025-11-20 20:20:32,731 | INFO     | monitor loop #7974: job 0:6891572110 is in state 'finished'
[2025-11-20 15:21:19] 2025-11-20 20:20:32,732 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-20 15:21:19] 2025-11-20 20:20:34,722 | INFO     | time since job start (141476s) is within the limit (172800.0s)
[2025-11-20 15:21:19] 2025-11-20 20:20:34,969 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-20 15:21:19] 2025-11-20 20:20:34,981 | INFO     | found 20 cores (10 cores per socket, 2 sockets) HT, CPU MHz: 2599.8611000000005
[2025-11-20 15:21:19] 2025-11-20 20:20:34,988 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6891572110/memory_monitor_summary.json (trf name=prmon)
[2025-11-20 15:21:19] 2025-11-20 20:20:34,989 | INFO     | extracted standard info from prmon json
[2025-11-20 15:21:19] 2025-11-20 20:20:34,989 | INFO     | extracted standard memory fields from prmon json
[2025-11-20 15:21:19] 2025-11-20 20:20:34,989 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-20 15:21:19] 2025-11-20 20:20:35,031 | INFO     | fitting pss+swap vs Time
[2025-11-20 15:21:19] 2025-11-20 20:20:35,034 | INFO     | sum of square deviations: 3856918308379.825
[2025-11-20 15:21:19] 2025-11-20 20:20:35,162 | INFO     | sum of deviations: 28655355922368.72
[2025-11-20 15:21:19] 2025-11-20 20:20:35,162 | INFO     | mean x: 1763599351.3569272
[2025-11-20 15:21:19] 2025-11-20 20:20:35,162 | INFO     | mean y: 3436471.5481225722
[2025-11-20 15:21:19] 2025-11-20 20:20:35,162 | INFO     | intersect: -13099399284.084005
[2025-11-20 15:21:19] 2025-11-20 20:20:35,166 | INFO     | chi2: 31.496635234548734
[2025-11-20 15:21:19] 2025-11-20 20:20:35,169 | INFO     | sum of square deviations: 3832009289987.3315
[2025-11-20 15:21:19] 2025-11-20 20:20:35,269 | INFO     | monitor loop #7975: job 0:6891572110 is in state 'finished'
[2025-11-20 15:21:19] 2025-11-20 20:20:35,270 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-20 15:21:19] 2025-11-20 20:20:35,474 | INFO     | sum of deviations: 29600329805774.902
[2025-11-20 15:21:19] 2025-11-20 20:20:35,474 | INFO     | mean x: 1763599198.8793252
[2025-11-20 15:21:19] 2025-11-20 20:20:35,474 | INFO     | mean y: 3442255.6803633217
[2025-11-20 15:21:19] 2025-11-20 20:20:35,475 | INFO     | intersect: -13619467810.960161
[2025-11-20 15:21:19] 2025-11-20 20:20:35,478 | INFO     | chi2: 28.199438480879717
[2025-11-20 15:21:19] 2025-11-20 20:20:35,478 | INFO     | current chi2=28.199438480879717 (change=10.468409495539746 %)
[2025-11-20 15:21:19] 2025-11-20 20:20:35,478 | INFO     | right removable region: 2311
[2025-11-20 15:21:19] 2025-11-20 20:20:35,481 | INFO     | sum of square deviations: 3831994651817.338
[2025-11-20 15:21:19] 2025-11-20 20:20:35,609 | INFO     | sum of deviations: 27498837280726.137
[2025-11-20 15:21:19] 2025-11-20 20:20:35,610 | INFO     | mean x: 1763599503.8793252
[2025-11-20 15:21:19] 2025-11-20 20:20:35,610 | INFO     | mean y: 3443548.7495674742
[2025-11-20 15:21:19] 2025-11-20 20:20:35,610 | INFO     | intersect: -12652350676.471247
[2025-11-20 15:21:19] 2025-11-20 20:20:35,613 | INFO     | chi2: 26.872046757639914
[2025-11-20 15:21:19] 2025-11-20 20:20:35,613 | INFO     | current chi2=26.872046757639914 (change=14.68280164681241 %)
[2025-11-20 15:21:19] 2025-11-20 20:20:35,613 | INFO     | left removable region: 10
[2025-11-20 15:21:19] 2025-11-20 20:20:35,616 | INFO     | sum of square deviations: 3777558375615.6343
[2025-11-20 15:21:19] 2025-11-20 20:20:35,778 | INFO     | sum of deviations: 27591178747752.824
[2025-11-20 15:21:19] 2025-11-20 20:20:35,778 | INFO     | mean x: 1763599473.4289439
[2025-11-20 15:21:19] 2025-11-20 20:20:35,810 | INFO     | mean y: 3457316.8796175574
[2025-11-20 15:21:19] 2025-11-20 20:20:35,810 | INFO     | intersect: -12877822989.712755
[2025-11-20 15:21:19] 2025-11-20 20:20:35,813 | INFO     | chi2: 18.881886710236618
[2025-11-20 15:21:19] 2025-11-20 20:20:35,863 | INFO     | current memory leak: 7.30 B/s (using 2301 data points, chi2=18.88)
[2025-11-20 15:21:19] 2025-11-20 20:20:35,864 | INFO     | could have reported an average CPU frequency of 2599 MHz (80 samples)
[2025-11-20 15:21:19] 2025-11-20 20:20:35,865 | INFO     | ..............................
[2025-11-20 15:21:19] 2025-11-20 20:20:35,865 | INFO     | . Timing measurements:
[2025-11-20 15:21:19] 2025-11-20 20:20:35,865 | INFO     | . get job = 0 s
[2025-11-20 15:21:19] 2025-11-20 20:20:35,865 | INFO     | . initial setup = 6 s
[2025-11-20 15:21:19] 2025-11-20 20:20:35,865 | INFO     | . payload setup = 44 s
[2025-11-20 15:21:19] 2025-11-20 20:20:35,865 | INFO     | . stage-in = 0 s
[2025-11-20 15:21:19] 2025-11-20 20:20:35,865 | INFO     | . payload execution = 141340 s
[2025-11-20 15:21:19] 2025-11-20 20:20:35,865 | INFO     | . stage-out = 4 s
[2025-11-20 15:21:19] 2025-11-20 20:20:35,865 | INFO     | . log creation = 1 s
[2025-11-20 15:21:19] 2025-11-20 20:20:35,866 | INFO     | ..............................
[2025-11-20 15:21:19] 2025-11-20 20:20:36,092 | INFO     | 
[2025-11-20 15:21:19] 2025-11-20 20:20:36,092 | INFO     | job summary report
[2025-11-20 15:21:19] 2025-11-20 20:20:36,092 | INFO     | --------------------------------------------------
[2025-11-20 15:21:19] 2025-11-20 20:20:36,092 | INFO     | PanDA job id: 6891572110
[2025-11-20 15:21:19] 2025-11-20 20:20:36,092 | INFO     | task id: 47493068
[2025-11-20 15:21:19] 2025-11-20 20:20:36,092 | INFO     | errors: (none)
[2025-11-20 15:21:19] 2025-11-20 20:20:36,092 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-20 15:21:19] 2025-11-20 20:20:36,092 | INFO     | pilot state: finished 
[2025-11-20 15:21:19] 2025-11-20 20:20:36,093 | INFO     | transexitcode: 0
[2025-11-20 15:21:19] 2025-11-20 20:20:36,093 | INFO     | exeerrorcode: 0
[2025-11-20 15:21:19] 2025-11-20 20:20:36,093 | INFO     | exeerrordiag: 
[2025-11-20 15:21:19] 2025-11-20 20:20:36,093 | INFO     | exitcode: 0
[2025-11-20 15:21:19] 2025-11-20 20:20:36,093 | INFO     | exitmsg: OK
[2025-11-20 15:21:19] 2025-11-20 20:20:36,093 | INFO     | cpuconsumptiontime: 304237 s
[2025-11-20 15:21:19] 2025-11-20 20:20:36,093 | INFO     | nevents: 1000
[2025-11-20 15:21:19] 2025-11-20 20:20:36,093 | INFO     | neventsw: 0
[2025-11-20 15:21:19] 2025-11-20 20:20:36,098 | INFO     | pid: 3203410
[2025-11-20 15:21:19] 2025-11-20 20:20:36,098 | INFO     | pgrp: 3203410
[2025-11-20 15:21:19] 2025-11-20 20:20:36,098 | INFO     | corecount: 12
[2025-11-20 15:21:19] 2025-11-20 20:20:36,098 | INFO     | event service: False
[2025-11-20 15:21:19] 2025-11-20 20:20:36,098 | INFO     | sizes: {0: 2296372, 1: 2296973, 2: 2297057, 3: 2297113, 4: 2297312, 15: 2297312, 26: 2297468, 32: 2297758, 37: 2297786, 141388: 2387302, 141394: 2397892, 141395: 2
[2025-11-20 15:21:19] 2025-11-20 20:20:36,098 | INFO     | --------------------------------------------------
[2025-11-20 15:21:19] 2025-11-20 20:20:36,098 | INFO     | 
[2025-11-20 15:21:19] 2025-11-20 20:20:36,098 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-11-20 15:21:19] 2025-11-20 20:20:36,289 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-20 15:21:19] 2025-11-20 20:20:36,289 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-20 15:21:19] 2025-11-20 20:20:36,289 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-20 15:21:19] 2025-11-20 20:20:36,289 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-20 15:21:19] 2025-11-20 20:20:36,289 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-20 15:21:19] 2025-11-20 20:20:36,289 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-20 15:21:19] 2025-11-20 20:20:36,290 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-20 15:21:19] 2025-11-20 20:20:36,290 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-20 15:21:19] 2025-11-20 20:20:36,290 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-20 15:21:19] 2025-11-20 20:20:36,290 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-20 15:21:19] 2025-11-20 20:20:36,290 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-20 15:21:19] 2025-11-20 20:20:36,290 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-20 15:21:19] 2025-11-20 20:20:36,290 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-20 15:21:19] 2025-11-20 20:20:36,290 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-20 15:21:19] 2025-11-20 20:20:36,290 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-20 15:21:19] 2025-11-20 20:20:36,316 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-20 15:21:19] 2025-11-20 20:20:36,316 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-20 15:21:19] 2025-11-20 20:20:36,316 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-20 15:21:19] 2025-11-20 20:20:36,316 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-20 15:21:19] 2025-11-20 20:20:36,316 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-20 15:21:19] 2025-11-20 20:20:36,316 | INFO     | job 6891572110 has completed (purged errors)
[2025-11-20 15:21:19] 2025-11-20 20:20:36,316 | INFO     | overall cleanup function is called
[2025-11-20 15:21:19] 2025-11-20 20:20:37,515 | INFO     | --- collectZombieJob: --- 10, [3203410]
[2025-11-20 15:21:19] 2025-11-20 20:20:37,516 | INFO     | zombie collector waiting for pid 3203410
[2025-11-20 15:21:19] 2025-11-20 20:20:37,516 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-20 15:21:19] 2025-11-20 20:20:37,516 | INFO     | collected zombie processes
[2025-11-20 15:21:19] 2025-11-20 20:20:37,516 | INFO     | will attempt to kill all subprocesses of pid=3203410
[2025-11-20 15:21:19] 2025-11-20 20:20:37,719 | INFO     | process IDs to be killed: [3203410] (in reverse order)
[2025-11-20 15:21:19] 2025-11-20 20:20:37,788 | WARNING  | found no corresponding commands to process id(s)
[2025-11-20 15:21:19] 2025-11-20 20:20:37,788 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-20 15:21:19] 2025-11-20 20:20:37,795 | INFO     | did not find any defunct processes belonging to 3203410
[2025-11-20 15:21:19] 2025-11-20 20:20:37,802 | INFO     | did not find any defunct processes belonging to 3203410
[2025-11-20 15:21:19] 2025-11-20 20:20:37,804 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-20 15:21:19] 2025-11-20 20:20:37,804 | INFO     | ready for new job
[2025-11-20 15:21:19] 2025-11-20 20:20:37,804 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-20 15:21:19] 2025-11-20 20:20:37,809 | INFO     | ***************************************
[2025-11-20 15:21:19] 2025-11-20 20:20:37,810 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-20 15:21:19] 2025-11-20 20:20:37,810 | INFO     | ***************************************
[2025-11-20 15:21:19] 2025-11-20 20:20:37,810 | INFO     | 
[2025-11-20 15:21:19] 2025-11-20 20:20:37,812 | INFO     | architecture information:
[2025-11-20 15:21:19] 2025-11-20 20:20:37,812 | INFO     | executing command: cat /etc/os-release
[2025-11-20 15:21:19] 2025-11-20 20:20:37,836 | INFO     | cat /etc/os-release:
[2025-11-20 15:21:19] NAME="CentOS Linux"
[2025-11-20 15:21:19] VERSION="7 (Core)"
[2025-11-20 15:21:19] ID="centos"
[2025-11-20 15:21:19] ID_LIKE="rhel fedora"
[2025-11-20 15:21:19] VERSION_ID="7"
[2025-11-20 15:21:19] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-20 15:21:19] ANSI_COLOR="0;31"
[2025-11-20 15:21:19] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-20 15:21:19] HOME_URL="https://www.centos.org/"
[2025-11-20 15:21:19] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-20 15:21:19] 
[2025-11-20 15:21:19] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-20 15:21:19] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-20 15:21:19] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-20 15:21:19] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-20 15:21:19] 
[2025-11-20 15:21:19] 2025-11-20 20:20:37,836 | INFO     | ***************************************
[2025-11-20 15:21:19] 2025-11-20 20:20:38,341 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-11-20 15:21:19] 2025-11-20 20:20:38,356 | INFO     | sufficient remaining disk space (51090817024 B)
[2025-11-20 15:21:19] 2025-11-20 20:20:38,356 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-20 15:21:19] 2025-11-20 20:20:38,357 | INFO     | current server update state: UPDATING_FINAL
[2025-11-20 15:21:19] 2025-11-20 20:20:38,357 | INFO     | update_server=False
[2025-11-20 15:21:19] 2025-11-20 20:20:38,357 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-20 15:21:19] 2025-11-20 20:20:38,357 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-20 15:21:19] 2025-11-20 20:20:38,713 | INFO     | all data control threads have been joined
[2025-11-20 15:21:19] 2025-11-20 20:20:38,814 | INFO     | all payload control threads have been joined
[2025-11-20 15:21:19] 2025-11-20 20:20:38,833 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-20 15:21:19] 2025-11-20 20:20:38,834 | INFO     | aborting loop
[2025-11-20 15:21:19] 2025-11-20 20:20:39,363 | INFO     | [job] retrieve thread has finished
[2025-11-20 15:21:19] 2025-11-20 20:20:39,382 | INFO     | all job control threads have been joined
[2025-11-20 15:21:19] 2025-11-20 20:20:39,610 | INFO     | [payload] failed_post thread has finished
[2025-11-20 15:21:19] 2025-11-20 20:20:39,720 | INFO     | [data] control thread has finished
[2025-11-20 15:21:19] 2025-11-20 20:20:39,789 | INFO     | [payload] execute_payloads thread has finished
[2025-11-20 15:21:19] 2025-11-20 20:20:39,805 | INFO     | [payload] validate_post thread has finished
[2025-11-20 15:21:19] 2025-11-20 20:20:39,821 | INFO     | [payload] control thread has finished
[2025-11-20 15:21:19] 2025-11-20 20:20:39,841 | INFO     | [job] job monitor thread has finished
[2025-11-20 15:21:19] 2025-11-20 20:20:40,241 | INFO     | [job] validate thread has finished
[2025-11-20 15:21:19] 2025-11-20 20:20:40,365 | INFO     | [data] copytool_out thread has finished
[2025-11-20 15:21:19] 2025-11-20 20:20:40,389 | INFO     | [job] control thread has finished
[2025-11-20 15:21:19] 2025-11-20 20:20:40,559 | INFO     | [data] copytool_in thread has finished
[2025-11-20 15:21:19] 2025-11-20 20:20:40,559 | INFO     | [job] create_data_payload thread has finished
[2025-11-20 15:21:19] 2025-11-20 20:20:40,561 | INFO     | [payload] validate_pre thread has finished
[2025-11-20 15:21:19] 2025-11-20 20:20:40,574 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-20 15:21:19] 2025-11-20 20:20:41,119 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-20 15:21:19] 2025-11-20 20:20:42,125 | INFO     | [job] queue monitor thread has finished
[2025-11-20 15:21:19] 2025-11-20 20:20:44,583 | INFO     | [data] queue_monitor thread has finished
[2025-11-20 15:21:19] 2025-11-20 20:20:48,879 | INFO     | job.realtimelogging is not enabled
[2025-11-20 15:21:19] 2025-11-20 20:20:49,885 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-20 15:21:19] 2025-11-20 20:21:08,774 | INFO     | PID=3195298 has CPU usage=4.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-20 15:21:19] 2025-11-20 20:21:08,775 | INFO     | .. there are 7 such processes running
[2025-11-20 15:21:19] 2025-11-20 20:21:08,775 | INFO     | found 0 job(s) in 20 queues
[2025-11-20 15:21:19] 2025-11-20 20:21:08,776 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-20 15:21:19] 2025-11-20 20:21:08,776 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-20 15:21:19] 2025-11-20 20:21:14,036 | INFO     | [monitor] cgroup control has ended
[2025-11-20 15:21:19] 2025-11-20 20:21:14,405 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140158083938112)>', '<ExcThread(monitor, started 140157558695680)>']
[2025-11-20 15:21:19] 2025-11-20 20:21:14,812 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-20 15:21:19] 2025-11-20 20:21:14,813 | INFO     | [monitor] control thread has ended
[2025-11-20 15:21:19] 2025-11-20 20:21:19,434 | INFO     | all workflow threads have been joined
[2025-11-20 15:21:19] 2025-11-20 20:21:19,435 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-20 15:21:19] 2025-11-20 20:21:19,435 | INFO     | traces error code: 0
[2025-11-20 15:21:19] 2025-11-20 20:21:19,436 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-20 15:21:19] 2025-11-20 20:21:19,601 [wrapper] ==== pilot stdout END ====
[2025-11-20 15:21:19] 2025-11-20 20:21:19,604 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-20 15:21:19] 2025-11-20 20:21:19,606 [wrapper] pilotpid: 3195298
[2025-11-20 15:21:19] 2025-11-20 20:21:19,608 [wrapper] Pilot exit status: 0
[2025-11-20 15:21:19] 2025-11-20 20:21:19,649 [wrapper] pandaids: 6891572110
[2025-11-20 15:21:19] 2025-11-20 20:21:19,694 [wrapper] cleanup supervisor_pilot 2288764 3195299
[2025-11-20 15:21:19] 2025-11-20 20:21:19,697 [wrapper] Test setup, not cleaning
[2025-11-20 15:21:19] 2025-11-20 20:21:19,699 [wrapper] apfmon messages muted
[2025-11-20 15:21:19] 2025-11-20 20:21:19,702 [wrapper] ==== wrapper stdout END ====
[2025-11-20 15:21:19] 2025-11-20 20:21:19,704 [wrapper] ==== wrapper stderr END ====
[2025-11-20 15:21:19]  *** Error codes and diagnostics ***
[2025-11-20 15:21:19]     "exeErrorCode": 0,
[2025-11-20 15:21:19]     "exeErrorDiag": "",
[2025-11-20 15:21:19]     "pilotErrorCode": 0,
[2025-11-20 15:21:19]     "pilotErrorDiag": "",
[2025-11-20 15:21:19]  *** Listing of results directory ***
[2025-11-20 15:21:19] total 1329096
[2025-11-20 15:21:19] -rw-r--r--. 1 boincer umatlas    576529 Nov 18 10:47 pilot3.tar.gz
[2025-11-20 15:21:19] -rw-r--r--. 1 boincer umatlas      5112 Nov 18 11:20 queuedata.json
[2025-11-20 15:21:19] -rwx------. 1 boincer umatlas     36292 Nov 18 11:21 runpilot2-wrapper.sh
[2025-11-20 15:21:19] -rw-r--r--. 1 boincer umatlas       100 Nov 19 00:01 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-20 15:21:19] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 19 00:01 run_atlas
[2025-11-20 15:21:19] -rw-r--r--. 1 boincer umatlas       105 Nov 19 00:01 job.xml
[2025-11-20 15:21:19] -rw-r--r--. 2 boincer umatlas 409881899 Nov 19 00:01 EVNT.47493065._000329.pool.root.1
[2025-11-20 15:21:19] -rw-r--r--. 2 boincer umatlas     15120 Nov 19 00:01 start_atlas.sh
[2025-11-20 15:21:19] drwxrwx--x. 2 boincer umatlas      4096 Nov 19 00:01 shared
[2025-11-20 15:21:19] -rw-r--r--. 2 boincer umatlas    590101 Nov 19 00:01 input.tar.gz
[2025-11-20 15:21:19] -rw-r--r--. 1 boincer umatlas         0 Nov 19 00:01 boinc_lockfile
[2025-11-20 15:21:19] -rw-r--r--. 1 boincer umatlas      2773 Nov 19 00:01 pandaJob.out
[2025-11-20 15:21:19] -rw-------. 1 boincer umatlas    992806 Nov 19 00:02 agis_schedconf.cvmfs.json
[2025-11-20 15:21:19] drwx------. 5 boincer umatlas      4096 Nov 19 00:02 pilot3
[2025-11-20 15:21:19] -rw-r--r--. 1 boincer umatlas       533 Nov 20 14:59 boinc_task_state.xml
[2025-11-20 15:21:19] -rw-------. 1 boincer umatlas 906097786 Nov 20 15:19 HITS.47493068._003283.pool.root.1
[2025-11-20 15:21:19] -rw-r--r--. 1 boincer umatlas      6661 Nov 20 15:19 init_data.xml
[2025-11-20 15:21:19] -rw-------. 1 boincer umatlas      1081 Nov 20 15:20 memory_monitor_summary.json
[2025-11-20 15:21:19] -rw-------. 1 boincer umatlas   1526164 Nov 20 15:20 agis_ddmendpoints.agis.ALL.json
[2025-11-20 15:21:19] -rw-------. 1 boincer umatlas   3480136 Nov 20 15:20 log.47493068._003283.job.log.tgz.1
[2025-11-20 15:21:19] -rw-------. 1 boincer umatlas      8696 Nov 20 15:20 heartbeat.json
[2025-11-20 15:21:19] -rw-------. 1 boincer umatlas        95 Nov 20 15:21 pilot_heartbeat.json
[2025-11-20 15:21:19] -rw-r--r--. 1 boincer umatlas      8192 Nov 20 15:21 boinc_mmap_file
[2025-11-20 15:21:19] -rw-r--r--. 1 boincer umatlas        29 Nov 20 15:21 wrapper_checkpoint.txt
[2025-11-20 15:21:19] -rw-------. 1 boincer umatlas      4895 Nov 20 15:21 pilotlog.txt
[2025-11-20 15:21:19] -rw-------. 1 boincer umatlas  17065431 Nov 20 15:21 log.47493068._003283.job.log.1
[2025-11-20 15:21:19] -rw-------. 1 boincer umatlas       353 Nov 20 15:21 output.list
[2025-11-20 15:21:19] -rw-r--r--. 1 boincer umatlas       620 Nov 20 15:21 runtime_log
[2025-11-20 15:21:19] -rw-------. 1 boincer umatlas  20561920 Nov 20 15:21 result.tar.gz
[2025-11-20 15:21:19] -rw-r--r--. 1 boincer umatlas      8702 Nov 20 15:21 runtime_log.err
[2025-11-20 15:21:19] -rw-------. 1 boincer umatlas       668 Nov 20 15:21 QaYLDmgddf8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmTlFKDmNkBzNo.diag
[2025-11-20 15:21:19] -rw-r--r--. 1 boincer umatlas     21811 Nov 20 15:21 stderr.txt
[2025-11-20 15:21:19] HITS file was successfully produced:
[2025-11-20 15:21:19] -rw-------. 1 boincer umatlas 906097786 Nov 20 15:19 shared/HITS.pool.root.1
[2025-11-20 15:21:19]  *** Contents of shared directory: ***
[2025-11-20 15:21:19] total 1305824
[2025-11-20 15:21:19] -rw-r--r--. 2 boincer umatlas 409881899 Nov 19 00:01 ATLAS.root_0
[2025-11-20 15:21:19] -rw-r--r--. 2 boincer umatlas     15120 Nov 19 00:01 start_atlas.sh
[2025-11-20 15:21:19] -rw-r--r--. 2 boincer umatlas    590101 Nov 19 00:01 input.tar.gz
[2025-11-20 15:21:19] -rw-------. 1 boincer umatlas 906097786 Nov 20 15:19 HITS.pool.root.1
[2025-11-20 15:21:19] -rw-------. 1 boincer umatlas  20561920 Nov 20 15:21 result.tar.gz
15:21:21 (3191261): run_atlas exited; CPU time 305424.627155
15:21:21 (3191261): called boinc_finish(0)

</stderr_txt>
]]>

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