Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
18:34:19 (11074): wrapper (7.7.26015): starting
18:34:19 (11074): wrapper: running run_atlas (--nthreads 8)
[2025-11-18 18:34:19] Arguments: --nthreads 8
[2025-11-18 18:34:19] Threads: 8
[2025-11-18 18:34:19] Checking for CVMFS
[2025-11-18 18:34:20] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-18 18:34:22] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-18 18:34:22] Running cvmfs_config stat atlas.cern.ch
[2025-11-18 18:34:24] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-18 18:34:24] 2.11.2.0 25006 273982 142212 153009 2 56 16055294 25165825 3609 130560 2 132720407 99.873 76739519 3134 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-18 18:34:24] CVMFS is ok
[2025-11-18 18:34:24] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-18 18:34:24] Checking for apptainer binary...
[2025-11-18 18:34:24] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-18 18:34:24] Running /usr/bin/apptainer --version
[2025-11-18 18:34:24] apptainer version 1.3.2-1.el7
[2025-11-18 18:34:24] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-18 18:34:34] cg-vwn386.simple-grid.lan
[2025-11-18 18:34:34] apptainer works
[2025-11-18 18:34:34] Set ATHENA_PROC_NUMBER=8
[2025-11-18 18:34:34] Set ATHENA_CORE_NUMBER=8
[2025-11-18 18:34:34] Starting ATLAS job with PandaID=6891572080
[2025-11-18 18:34:34] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/16 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-19 19:57:39]  *** The last 200 lines of the pilot log: ***
[2025-11-19 19:57:39] 2025-11-19 18:56:38,074 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-19 19:57:39] 2025-11-19 18:56:38,457 | INFO     | time since job start (91127s) is within the limit (172800.0s)
[2025-11-19 19:57:39] 2025-11-19 18:56:40,465 | INFO     | time since job start (91129s) is within the limit (172800.0s)
[2025-11-19 19:57:39] 2025-11-19 18:56:40,466 | INFO     | 91139s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-11-19 19:57:39] 2025-11-19 18:56:40,585 | INFO     | monitor loop #6126: job 0:6891572080 is in state 'finished'
[2025-11-19 19:57:39] 2025-11-19 18:56:40,585 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-19 19:57:39] 2025-11-19 18:56:42,479 | INFO     | time since job start (91131s) is within the limit (172800.0s)
[2025-11-19 19:57:39] 2025-11-19 18:56:43,092 | INFO     | monitor loop #6127: job 0:6891572080 is in state 'finished'
[2025-11-19 19:57:39] 2025-11-19 18:56:43,092 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-19 19:57:39] 2025-11-19 18:56:44,486 | INFO     | time since job start (91133s) is within the limit (172800.0s)
[2025-11-19 19:57:39] 2025-11-19 18:56:45,602 | INFO     | monitor loop #6128: job 0:6891572080 is in state 'finished'
[2025-11-19 19:57:39] 2025-11-19 18:56:45,602 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-19 19:57:39] 2025-11-19 18:56:46,493 | INFO     | time since job start (91135s) is within the limit (172800.0s)
[2025-11-19 19:57:39] 2025-11-19 18:56:47,996 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-19 19:57:39] 2025-11-19 18:56:47,998 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-11-19 19:57:39] 2025-11-19 18:56:48,000 | INFO     | using path: /var/lib/boinc/slots/16/PanDA_Pilot-6891572080/memory_monitor_summary.json (trf name=prmon)
[2025-11-19 19:57:39] 2025-11-19 18:56:48,001 | INFO     | extracted standard info from prmon json
[2025-11-19 19:57:39] 2025-11-19 18:56:48,001 | INFO     | extracted standard memory fields from prmon json
[2025-11-19 19:57:39] 2025-11-19 18:56:48,001 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-19 19:57:39] 2025-11-19 18:56:48,031 | INFO     | fitting pss+swap vs Time
[2025-11-19 19:57:39] 2025-11-19 18:56:48,033 | INFO     | sum of square deviations: 1015449962451.3115
[2025-11-19 19:57:39] 2025-11-19 18:56:48,098 | INFO     | sum of deviations: 4630491633151.171
[2025-11-19 19:57:39] 2025-11-19 18:56:48,098 | INFO     | mean x: 1763533209.0848484
[2025-11-19 19:57:39] 2025-11-19 18:56:48,098 | INFO     | mean y: 2814456.967003367
[2025-11-19 19:57:39] 2025-11-19 18:56:48,099 | INFO     | intersect: -8038966104.764188
[2025-11-19 19:57:39] 2025-11-19 18:56:48,100 | INFO     | chi2: 34.97036158231579
[2025-11-19 19:57:39] 2025-11-19 18:56:48,103 | INFO     | sum of square deviations: 1005227899340.4033
[2025-11-19 19:57:39] 2025-11-19 18:56:48,120 | INFO     | monitor loop #6129: job 0:6891572080 is in state 'finished'
[2025-11-19 19:57:39] 2025-11-19 18:56:48,120 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-19 19:57:39] 2025-11-19 18:56:48,169 | INFO     | sum of deviations: 5104035279408.194
[2025-11-19 19:57:39] 2025-11-19 18:56:48,170 | INFO     | mean x: 1763533056.5885136
[2025-11-19 19:57:39] 2025-11-19 18:56:48,170 | INFO     | mean y: 2821520.552027027
[2025-11-19 19:57:39] 2025-11-19 18:56:48,170 | INFO     | intersect: -8951501119.255905
[2025-11-19 19:57:39] 2025-11-19 18:56:48,172 | INFO     | chi2: 31.898097622549084
[2025-11-19 19:57:39] 2025-11-19 18:56:48,172 | INFO     | current chi2=31.898097622549084 (change=8.785336555743028 %)
[2025-11-19 19:57:39] 2025-11-19 18:56:48,172 | INFO     | right removable region: 1479
[2025-11-19 19:57:39] 2025-11-19 18:56:48,174 | INFO     | sum of square deviations: 1005226916630.4034
[2025-11-19 19:57:39] 2025-11-19 18:56:48,248 | INFO     | sum of deviations: 4001343805628.827
[2025-11-19 19:57:39] 2025-11-19 18:56:48,249 | INFO     | mean x: 1763533361.5885136
[2025-11-19 19:57:39] 2025-11-19 18:56:48,249 | INFO     | mean y: 2823842.1195945945
[2025-11-19 19:57:39] 2025-11-19 18:56:48,250 | INFO     | intersect: -7016987481.741404
[2025-11-19 19:57:39] 2025-11-19 18:56:48,251 | INFO     | chi2: 29.923152374910266
[2025-11-19 19:57:39] 2025-11-19 18:56:48,252 | INFO     | current chi2=29.923152374910266 (change=14.432819619336886 %)
[2025-11-19 19:57:39] 2025-11-19 18:56:48,252 | INFO     | left removable region: 10
[2025-11-19 19:57:39] 2025-11-19 18:56:48,254 | INFO     | sum of square deviations: 982979379148.2838
[2025-11-19 19:57:39] 2025-11-19 18:56:48,311 | INFO     | sum of deviations: 4003544692435.8623
[2025-11-19 19:57:39] 2025-11-19 18:56:48,312 | INFO     | mean x: 1763533331.0966644
[2025-11-19 19:57:39] 2025-11-19 18:56:48,312 | INFO     | mean y: 2841229.9938733834
[2025-11-19 19:57:39] 2025-11-19 18:56:48,312 | INFO     | intersect: -7179796226.514477
[2025-11-19 19:57:39] 2025-11-19 18:56:48,314 | INFO     | chi2: 21.977396026541676
[2025-11-19 19:57:39] 2025-11-19 18:56:48,314 | INFO     | current memory leak: 4.07 B/s (using 1469 data points, chi2=21.98)
[2025-11-19 19:57:39] 2025-11-19 18:56:48,316 | INFO     | could have reported an average CPU frequency of 1999 MHz (50 samples)
[2025-11-19 19:57:39] 2025-11-19 18:56:48,316 | INFO     | ..............................
[2025-11-19 19:57:39] 2025-11-19 18:56:48,317 | INFO     | . Timing measurements:
[2025-11-19 19:57:39] 2025-11-19 18:56:48,317 | INFO     | . get job = 0 s
[2025-11-19 19:57:39] 2025-11-19 18:56:48,317 | INFO     | . initial setup = 9 s
[2025-11-19 19:57:39] 2025-11-19 18:56:48,317 | INFO     | . payload setup = 148 s
[2025-11-19 19:57:39] 2025-11-19 18:56:48,317 | INFO     | . stage-in = 0 s
[2025-11-19 19:57:39] 2025-11-19 18:56:48,317 | INFO     | . payload execution = 90703 s
[2025-11-19 19:57:39] 2025-11-19 18:56:48,317 | INFO     | . stage-out = 5 s
[2025-11-19 19:57:39] 2025-11-19 18:56:48,317 | INFO     | . log creation = 1 s
[2025-11-19 19:57:39] 2025-11-19 18:56:48,317 | INFO     | ..............................
[2025-11-19 19:57:39] 2025-11-19 18:56:48,500 | INFO     | time since job start (91137s) is within the limit (172800.0s)
[2025-11-19 19:57:39] 2025-11-19 18:56:48,660 | INFO     | 
[2025-11-19 19:57:39] 2025-11-19 18:56:48,660 | INFO     | job summary report
[2025-11-19 19:57:39] 2025-11-19 18:56:48,660 | INFO     | --------------------------------------------------
[2025-11-19 19:57:39] 2025-11-19 18:56:48,660 | INFO     | PanDA job id: 6891572080
[2025-11-19 19:57:39] 2025-11-19 18:56:48,660 | INFO     | task id: 47493068
[2025-11-19 19:57:39] 2025-11-19 18:56:48,661 | INFO     | errors: (none)
[2025-11-19 19:57:39] 2025-11-19 18:56:48,661 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-19 19:57:39] 2025-11-19 18:56:48,661 | INFO     | pilot state: finished 
[2025-11-19 19:57:39] 2025-11-19 18:56:48,661 | INFO     | transexitcode: 0
[2025-11-19 19:57:39] 2025-11-19 18:56:48,661 | INFO     | exeerrorcode: 0
[2025-11-19 19:57:39] 2025-11-19 18:56:48,661 | INFO     | exeerrordiag: 
[2025-11-19 19:57:39] 2025-11-19 18:56:48,661 | INFO     | exitcode: 0
[2025-11-19 19:57:39] 2025-11-19 18:56:48,661 | INFO     | exitmsg: OK
[2025-11-19 19:57:39] 2025-11-19 18:56:48,661 | INFO     | cpuconsumptiontime: 334717 s
[2025-11-19 19:57:39] 2025-11-19 18:56:48,661 | INFO     | nevents: 1000
[2025-11-19 19:57:39] 2025-11-19 18:56:48,661 | INFO     | neventsw: 0
[2025-11-19 19:57:39] 2025-11-19 18:56:48,661 | INFO     | pid: 21702
[2025-11-19 19:57:39] 2025-11-19 18:56:48,662 | INFO     | pgrp: 21702
[2025-11-19 19:57:39] 2025-11-19 18:56:48,662 | INFO     | corecount: 8
[2025-11-19 19:57:39] 2025-11-19 18:56:48,662 | INFO     | event service: False
[2025-11-19 19:57:39] 2025-11-19 18:56:48,662 | INFO     | sizes: {0: 2296974, 1: 2297229, 12: 2297229, 23: 2297257, 34: 2297285, 44: 2297313, 55: 2297469, 66: 2297497, 77: 2297525, 87: 2297871, 90856: 2360589, 90861: 2369
[2025-11-19 19:57:39] 2025-11-19 18:56:48,662 | INFO     | --------------------------------------------------
[2025-11-19 19:57:39] 2025-11-19 18:56:48,662 | INFO     | 
[2025-11-19 19:57:39] 2025-11-19 18:56:48,662 | INFO     | executing command: ls -lF /var/lib/boinc/slots/16
[2025-11-19 19:57:39] 2025-11-19 18:56:49,382 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-19 19:57:39] 2025-11-19 18:56:49,383 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-19 19:57:39] 2025-11-19 18:56:49,383 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-19 19:57:39] 2025-11-19 18:56:49,383 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-19 19:57:39] 2025-11-19 18:56:49,383 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-19 19:57:39] 2025-11-19 18:56:49,383 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-19 19:57:39] 2025-11-19 18:56:49,383 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-19 19:57:39] 2025-11-19 18:56:49,383 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-19 19:57:39] 2025-11-19 18:56:49,383 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-19 19:57:39] 2025-11-19 18:56:49,383 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-19 19:57:39] 2025-11-19 18:56:49,384 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-19 19:57:39] 2025-11-19 18:56:49,384 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-19 19:57:39] 2025-11-19 18:56:49,384 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-19 19:57:39] 2025-11-19 18:56:49,384 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-19 19:57:39] 2025-11-19 18:56:49,384 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-19 19:57:39] 2025-11-19 18:56:49,384 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-19 19:57:39] 2025-11-19 18:56:49,384 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-19 19:57:39] 2025-11-19 18:56:49,384 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-19 19:57:39] 2025-11-19 18:56:49,384 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-19 19:57:39] 2025-11-19 18:56:49,384 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-19 19:57:39] 2025-11-19 18:56:49,385 | INFO     | job 6891572080 has completed (purged errors)
[2025-11-19 19:57:39] 2025-11-19 18:56:49,385 | INFO     | overall cleanup function is called
[2025-11-19 19:57:39] 2025-11-19 18:56:50,410 | INFO     | --- collectZombieJob: --- 10, [21702]
[2025-11-19 19:57:39] 2025-11-19 18:56:50,410 | INFO     | zombie collector waiting for pid 21702
[2025-11-19 19:57:39] 2025-11-19 18:56:50,410 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-19 19:57:39] 2025-11-19 18:56:50,410 | INFO     | collected zombie processes
[2025-11-19 19:57:39] 2025-11-19 18:56:50,410 | INFO     | will attempt to kill all subprocesses of pid=21702
[2025-11-19 19:57:39] 2025-11-19 18:56:50,530 | INFO     | process IDs to be killed: [21702] (in reverse order)
[2025-11-19 19:57:39] 2025-11-19 18:56:50,615 | WARNING  | found no corresponding commands to process id(s)
[2025-11-19 19:57:39] 2025-11-19 18:56:50,616 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-19 19:57:39] 2025-11-19 18:56:50,620 | INFO     | did not find any defunct processes belonging to 21702
[2025-11-19 19:57:39] 2025-11-19 18:56:50,622 | INFO     | did not find any defunct processes belonging to 21702
[2025-11-19 19:57:39] 2025-11-19 18:56:50,625 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-19 19:57:39] 2025-11-19 18:56:50,625 | INFO     | ready for new job
[2025-11-19 19:57:39] 2025-11-19 18:56:50,626 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-19 19:57:39] 2025-11-19 18:56:50,632 | INFO     | ***************************************
[2025-11-19 19:57:39] 2025-11-19 18:56:50,633 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-19 19:57:39] 2025-11-19 18:56:50,633 | INFO     | ***************************************
[2025-11-19 19:57:39] 2025-11-19 18:56:50,633 | INFO     | 
[2025-11-19 19:57:39] 2025-11-19 18:56:50,633 | INFO     | pilot is running in a VM
[2025-11-19 19:57:39] 2025-11-19 18:56:50,633 | INFO     | architecture information:
[2025-11-19 19:57:39] 2025-11-19 18:56:50,634 | INFO     | executing command: cat /etc/os-release
[2025-11-19 19:57:39] 2025-11-19 18:56:50,745 | INFO     | cat /etc/os-release:
[2025-11-19 19:57:39] NAME="CentOS Linux"
[2025-11-19 19:57:39] VERSION="7 (Core)"
[2025-11-19 19:57:39] ID="centos"
[2025-11-19 19:57:39] ID_LIKE="rhel fedora"
[2025-11-19 19:57:39] VERSION_ID="7"
[2025-11-19 19:57:39] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-19 19:57:39] ANSI_COLOR="0;31"
[2025-11-19 19:57:39] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-19 19:57:39] HOME_URL="https://www.centos.org/"
[2025-11-19 19:57:39] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-19 19:57:39] 
[2025-11-19 19:57:39] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-19 19:57:39] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-19 19:57:39] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-19 19:57:39] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-19 19:57:39] 
[2025-11-19 19:57:39] 2025-11-19 18:56:50,745 | INFO     | ***************************************
[2025-11-19 19:57:39] 2025-11-19 18:56:51,249 | INFO     | executing command: df -mP /var/lib/boinc/slots/16
[2025-11-19 19:57:39] 2025-11-19 18:56:51,542 | INFO     | sufficient remaining disk space (494825111552 B)
[2025-11-19 19:57:39] 2025-11-19 18:56:51,542 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-19 19:57:39] 2025-11-19 18:56:51,543 | INFO     | current server update state: UPDATING_FINAL
[2025-11-19 19:57:39] 2025-11-19 18:56:51,543 | INFO     | update_server=False
[2025-11-19 19:57:39] 2025-11-19 18:56:51,543 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-19 19:57:39] 2025-11-19 18:56:51,639 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-19 19:57:39] 2025-11-19 18:56:51,639 | INFO     | aborting loop
[2025-11-19 19:57:39] 2025-11-19 18:56:51,687 | INFO     | all payload control threads have been joined
[2025-11-19 19:57:39] 2025-11-19 18:56:52,457 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-19 19:57:39] 2025-11-19 18:56:52,469 | INFO     | all data control threads have been joined
[2025-11-19 19:57:39] 2025-11-19 18:56:52,548 | INFO     | [job] retrieve thread has finished
[2025-11-19 19:57:39] 2025-11-19 18:56:52,553 | INFO     | all job control threads have been joined
[2025-11-19 19:57:39] 2025-11-19 18:56:52,645 | INFO     | [job] job monitor thread has finished
[2025-11-19 19:57:39] 2025-11-19 18:56:52,693 | INFO     | [payload] control thread has finished
[2025-11-19 19:57:39] 2025-11-19 18:56:52,749 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-19 19:57:39] 2025-11-19 18:56:53,134 | INFO     | [data] copytool_in thread has finished
[2025-11-19 19:57:39] 2025-11-19 18:56:53,149 | INFO     | [job] create_data_payload thread has finished
[2025-11-19 19:57:39] 2025-11-19 18:56:53,205 | INFO     | [job] validate thread has finished
[2025-11-19 19:57:39] 2025-11-19 18:56:53,405 | INFO     | [payload] validate_post thread has finished
[2025-11-19 19:57:39] 2025-11-19 18:56:53,467 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-19 19:57:39] 2025-11-19 18:56:53,475 | INFO     | [data] control thread has finished
[2025-11-19 19:57:39] 2025-11-19 18:56:53,559 | INFO     | [job] control thread has finished
[2025-11-19 19:57:39] 2025-11-19 18:56:53,739 | INFO     | [payload] validate_pre thread has finished
[2025-11-19 19:57:39] 2025-11-19 18:56:53,802 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-19 19:57:39] 2025-11-19 18:56:53,865 | INFO     | [payload] failed_post thread has finished
[2025-11-19 19:57:39] 2025-11-19 18:56:53,971 | INFO     | [payload] execute_payloads thread has finished
[2025-11-19 19:57:39] 2025-11-19 18:56:54,463 | INFO     | [data] copytool_out thread has finished
[2025-11-19 19:57:39] 2025-11-19 18:56:54,474 | INFO     | [job] queue monitor thread has finished
[2025-11-19 19:57:39] 2025-11-19 18:56:56,758 | INFO     | [data] queue_monitor thread has finished
[2025-11-19 19:57:39] 2025-11-19 18:57:21,673 | INFO     | PID=15127 has CPU usage=1.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-19 19:57:39] 2025-11-19 18:57:21,674 | INFO     | .. there are 9 such processes running
[2025-11-19 19:57:39] 2025-11-19 18:57:21,676 | INFO     | found 0 job(s) in 20 queues
[2025-11-19 19:57:39] 2025-11-19 18:57:21,676 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-19 19:57:39] 2025-11-19 18:57:21,676 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-19 19:57:39] 2025-11-19 18:57:29,532 | INFO     | [monitor] cgroup control has ended
[2025-11-19 19:57:39] 2025-11-19 18:57:30,774 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139818432411456)>', '<ExcThread(monitor, started 139818122061568)>']
[2025-11-19 19:57:39] 2025-11-19 18:57:31,735 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-19 19:57:39] 2025-11-19 18:57:31,735 | INFO     | [monitor] control thread has ended
[2025-11-19 19:57:39] 2025-11-19 18:57:35,800 | INFO     | all workflow threads have been joined
[2025-11-19 19:57:39] 2025-11-19 18:57:35,800 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-19 19:57:39] 2025-11-19 18:57:35,801 | INFO     | traces error code: 0
[2025-11-19 19:57:39] 2025-11-19 18:57:35,801 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-19 19:57:39] 2025-11-19 18:57:36,305 [wrapper] ==== pilot stdout END ====
[2025-11-19 19:57:39] 2025-11-19 18:57:36,399 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-19 19:57:39] 2025-11-19 18:57:36,488 [wrapper] pilotpid: 15127
[2025-11-19 19:57:39] 2025-11-19 18:57:36,619 [wrapper] Pilot exit status: 0
[2025-11-19 19:57:39] 2025-11-19 18:57:37,076 [wrapper] pandaids: 6891572080
[2025-11-19 19:57:39] 2025-11-19 18:57:37,533 [wrapper] cleanup supervisor_pilot  2988 15128
[2025-11-19 19:57:39] 2025-11-19 18:57:37,601 [wrapper] Test setup, not cleaning
[2025-11-19 19:57:39] 2025-11-19 18:57:37,631 [wrapper] apfmon messages muted
[2025-11-19 19:57:39] 2025-11-19 18:57:37,678 [wrapper] ==== wrapper stdout END ====
[2025-11-19 19:57:39] 2025-11-19 18:57:37,744 [wrapper] ==== wrapper stderr END ====
[2025-11-19 19:57:39]  *** Error codes and diagnostics ***
[2025-11-19 19:57:39]     "exeErrorCode": 0,
[2025-11-19 19:57:39]     "exeErrorDiag": "",
[2025-11-19 19:57:39]     "pilotErrorCode": 0,
[2025-11-19 19:57:39]     "pilotErrorDiag": "",
[2025-11-19 19:57:39]  *** Listing of results directory ***
[2025-11-19 19:57:39] total 1333512
[2025-11-19 19:57:39] -rw-r--r--. 1 boinc boinc    576529 Nov 18 16:47 pilot3.tar.gz
[2025-11-19 19:57:39] -rw-r--r--. 1 boinc boinc      5112 Nov 18 17:16 queuedata.json
[2025-11-19 19:57:39] -rwx------. 1 boinc boinc     36292 Nov 18 17:17 runpilot2-wrapper.sh
[2025-11-19 19:57:39] -rw-r--r--. 1 boinc boinc       100 Nov 18 18:34 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-19 19:57:39] -rwxr-xr-x. 1 boinc boinc      7986 Nov 18 18:34 run_atlas
[2025-11-19 19:57:39] -rw-r--r--. 1 boinc boinc       105 Nov 18 18:34 job.xml
[2025-11-19 19:57:39] -rw-r--r--. 2 boinc boinc 410848921 Nov 18 18:34 EVNT.47493065._000326.pool.root.1
[2025-11-19 19:57:39] -rw-r--r--. 2 boinc boinc     15120 Nov 18 18:34 start_atlas.sh
[2025-11-19 19:57:39] drwxrwx--x. 2 boinc boinc        68 Nov 18 18:34 shared
[2025-11-19 19:57:39] -rw-r--r--. 2 boinc boinc    590102 Nov 18 18:34 input.tar.gz
[2025-11-19 19:57:39] -rw-r--r--. 1 boinc boinc      6391 Nov 18 18:34 init_data.xml
[2025-11-19 19:57:39] -rw-r--r--. 1 boinc boinc         0 Nov 18 18:34 boinc_lockfile
[2025-11-19 19:57:39] -rw-r--r--. 1 boinc boinc      2773 Nov 18 18:34 pandaJob.out
[2025-11-19 19:57:39] -rw-------. 1 boinc boinc    992798 Nov 18 18:37 agis_schedconf.cvmfs.json
[2025-11-19 19:57:39] drwx------. 5 boinc boinc      4096 Nov 18 18:37 pilot3
[2025-11-19 19:57:39] -rw-r--r--. 1 boinc boinc       533 Nov 19 19:29 boinc_task_state.xml
[2025-11-19 19:57:39] -rw-------. 1 boinc boinc 921140061 Nov 19 19:53 HITS.47493068._003253.pool.root.1
[2025-11-19 19:57:39] -rw-------. 1 boinc boinc      1032 Nov 19 19:55 memory_monitor_summary.json
[2025-11-19 19:57:39] -rw-------. 1 boinc boinc   1525063 Nov 19 19:55 agis_ddmendpoints.agis.ALL.json
[2025-11-19 19:57:39] -rw-------. 1 boinc boinc   2581732 Nov 19 19:55 log.47493068._003253.job.log.tgz.1
[2025-11-19 19:57:39] -rw-------. 1 boinc boinc      7947 Nov 19 19:56 heartbeat.json
[2025-11-19 19:57:39] -rw-------. 1 boinc boinc        95 Nov 19 19:57 pilot_heartbeat.json
[2025-11-19 19:57:39] -rw-r--r--. 1 boinc boinc        29 Nov 19 19:57 wrapper_checkpoint.txt
[2025-11-19 19:57:39] -rw-r--r--. 1 boinc boinc      8192 Nov 19 19:57 boinc_mmap_file
[2025-11-19 19:57:39] -rw-------. 1 boinc boinc      4885 Nov 19 19:57 pilotlog.txt
[2025-11-19 19:57:39] -rw-------. 1 boinc boinc  12231240 Nov 19 19:57 log.47493068._003253.job.log.1
[2025-11-19 19:57:39] -rw-------. 1 boinc boinc       353 Nov 19 19:57 output.list
[2025-11-19 19:57:39] -rw-r--r--. 1 boinc boinc       620 Nov 19 19:57 runtime_log
[2025-11-19 19:57:39] -rw-------. 1 boinc boinc  14827520 Nov 19 19:57 result.tar.gz
[2025-11-19 19:57:39] -rw-r--r--. 1 boinc boinc      8717 Nov 19 19:57 runtime_log.err
[2025-11-19 19:57:39] -rw-------. 1 boinc boinc       662 Nov 19 19:57 rcwKDmWZdf8n9Rq4apOajLDm4fhM0noT9bVo0NGKDm5SFKDmAfGCTo.diag
[2025-11-19 19:57:39] -rw-r--r--. 1 boinc boinc     21468 Nov 19 19:57 stderr.txt
[2025-11-19 19:57:40] HITS file was successfully produced:
[2025-11-19 19:57:40] -rw-------. 1 boinc boinc 921140061 Nov 19 19:53 shared/HITS.pool.root.1
[2025-11-19 19:57:40]  *** Contents of shared directory: ***
[2025-11-19 19:57:40] total 1315848
[2025-11-19 19:57:40] -rw-r--r--. 2 boinc boinc 410848921 Nov 18 18:34 ATLAS.root_0
[2025-11-19 19:57:40] -rw-r--r--. 2 boinc boinc     15120 Nov 18 18:34 start_atlas.sh
[2025-11-19 19:57:40] -rw-r--r--. 2 boinc boinc    590102 Nov 18 18:34 input.tar.gz
[2025-11-19 19:57:40] -rw-------. 1 boinc boinc 921140061 Nov 19 19:53 HITS.pool.root.1
[2025-11-19 19:57:40] -rw-------. 1 boinc boinc  14827520 Nov 19 19:57 result.tar.gz
19:57:41 (11074): run_atlas exited; CPU time 335427.768795
19:57:41 (11074): called boinc_finish(0)

</stderr_txt>
]]>

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