Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
19:57:48 (5403): wrapper (7.7.26015): starting
19:57:48 (5403): wrapper: running run_atlas (--nthreads 8)
[2025-11-19 19:57:48] Arguments: --nthreads 8
[2025-11-19 19:57:48] Threads: 8
[2025-11-19 19:57:48] Checking for CVMFS
[2025-11-19 19:57:49] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-19 19:57:50] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-19 19:57:50] Running cvmfs_config stat atlas.cern.ch
[2025-11-19 19:57:51] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-19 19:57:51] 2.11.2.0 25006 275506 140708 153053 2 14 17288109 25165825 4250 130560 2 133273292 99.870 77166611 3127 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-19 19:57:51] CVMFS is ok
[2025-11-19 19:57:51] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-19 19:57:51] Checking for apptainer binary...
[2025-11-19 19:57:51] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-19 19:57:51] Running /usr/bin/apptainer --version
[2025-11-19 19:57:51] apptainer version 1.3.2-1.el7
[2025-11-19 19:57:51] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-19 19:58:08] cg-vwn386.simple-grid.lan
[2025-11-19 19:58:08] apptainer works
[2025-11-19 19:58:08] Set ATHENA_PROC_NUMBER=8
[2025-11-19 19:58:08] Set ATHENA_CORE_NUMBER=8
[2025-11-19 19:58:08] Starting ATLAS job with PandaID=6891572077
[2025-11-19 19:58:08] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/16 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-20 21:27:02]  *** The last 200 lines of the pilot log: ***
[2025-11-20 21:27:02] 2025-11-20 20:25:54,401 | INFO     | time since job start (91423s) is within the limit (172800.0s)
[2025-11-20 21:27:02] 2025-11-20 20:25:55,731 | INFO     | monitor loop #6162: job 0:6891572077 is in state 'finished'
[2025-11-20 21:27:02] 2025-11-20 20:25:55,731 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-20 21:27:02] 2025-11-20 20:25:56,408 | INFO     | time since job start (91425s) is within the limit (172800.0s)
[2025-11-20 21:27:02] 2025-11-20 20:25:58,235 | INFO     | monitor loop #6163: job 0:6891572077 is in state 'finished'
[2025-11-20 21:27:02] 2025-11-20 20:25:58,235 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-20 21:27:02] 2025-11-20 20:25:58,415 | INFO     | time since job start (91427s) is within the limit (172800.0s)
[2025-11-20 21:27:02] 2025-11-20 20:26:00,422 | INFO     | time since job start (91429s) is within the limit (172800.0s)
[2025-11-20 21:27:02] 2025-11-20 20:26:00,742 | INFO     | monitor loop #6164: job 0:6891572077 is in state 'finished'
[2025-11-20 21:27:02] 2025-11-20 20:26:00,742 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-20 21:27:02] 2025-11-20 20:26:02,429 | INFO     | time since job start (91431s) is within the limit (172800.0s)
[2025-11-20 21:27:02] 2025-11-20 20:26:03,252 | INFO     | monitor loop #6165: job 0:6891572077 is in state 'finished'
[2025-11-20 21:27:02] 2025-11-20 20:26:03,252 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-20 21:27:02] 2025-11-20 20:26:04,441 | INFO     | time since job start (91433s) is within the limit (172800.0s)
[2025-11-20 21:27:02] 2025-11-20 20:26:04,772 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-20 21:27:02] 2025-11-20 20:26:04,774 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-11-20 21:27:02] 2025-11-20 20:26:04,775 | INFO     | using path: /var/lib/boinc/slots/16/PanDA_Pilot-6891572077/memory_monitor_summary.json (trf name=prmon)
[2025-11-20 21:27:02] 2025-11-20 20:26:04,776 | INFO     | extracted standard info from prmon json
[2025-11-20 21:27:02] 2025-11-20 20:26:04,776 | INFO     | extracted standard memory fields from prmon json
[2025-11-20 21:27:02] 2025-11-20 20:26:04,776 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-20 21:27:02] 2025-11-20 20:26:04,811 | INFO     | fitting pss+swap vs Time
[2025-11-20 21:27:02] 2025-11-20 20:26:04,814 | INFO     | sum of square deviations: 1023674612614.7338
[2025-11-20 21:27:02] 2025-11-20 20:26:04,892 | INFO     | sum of deviations: 3068705652356.3125
[2025-11-20 21:27:02] 2025-11-20 20:26:04,892 | INFO     | mean x: 1763624836.391538
[2025-11-20 21:27:02] 2025-11-20 20:26:04,893 | INFO     | mean y: 2861772.1040967093
[2025-11-20 21:27:02] 2025-11-20 20:26:04,893 | INFO     | intersect: -5284018880.574105
[2025-11-20 21:27:02] 2025-11-20 20:26:04,895 | INFO     | chi2: 14.732792028144889
[2025-11-20 21:27:02] 2025-11-20 20:26:04,897 | INFO     | sum of square deviations: 1013397451860.0188
[2025-11-20 21:27:02] 2025-11-20 20:26:04,961 | INFO     | sum of deviations: 3552498765535.755
[2025-11-20 21:27:02] 2025-11-20 20:26:04,962 | INFO     | mean x: 1763624683.8962264
[2025-11-20 21:27:02] 2025-11-20 20:26:04,962 | INFO     | mean y: 2868949.6347708893
[2025-11-20 21:27:02] 2025-11-20 20:26:04,962 | INFO     | intersect: -6179576546.8585005
[2025-11-20 21:27:02] 2025-11-20 20:26:04,964 | INFO     | chi2: 11.667525849738684
[2025-11-20 21:27:02] 2025-11-20 20:26:04,964 | INFO     | current chi2=11.667525849738684 (change=20.80573846797303 %)
[2025-11-20 21:27:02] 2025-11-20 20:26:04,964 | INFO     | right removable region: 1483
[2025-11-20 21:27:02] 2025-11-20 20:26:04,966 | INFO     | sum of square deviations: 1013396187940.019
[2025-11-20 21:27:02] 2025-11-20 20:26:05,025 | INFO     | sum of deviations: 2533307255412.829
[2025-11-20 21:27:02] 2025-11-20 20:26:05,025 | INFO     | mean x: 1763624988.8962264
[2025-11-20 21:27:02] 2025-11-20 20:26:05,025 | INFO     | mean y: 2869713.076819407
[2025-11-20 21:27:02] 2025-11-20 20:26:05,025 | INFO     | intersect: -4405873908.980915
[2025-11-20 21:27:02] 2025-11-20 20:26:05,027 | INFO     | chi2: 11.321162431289649
[2025-11-20 21:27:02] 2025-11-20 20:26:05,027 | INFO     | current chi2=11.321162431289649 (change=23.156707773637276 %)
[2025-11-20 21:27:02] 2025-11-20 20:26:05,028 | INFO     | left removable region: 10
[2025-11-20 21:27:02] 2025-11-20 20:26:05,029 | INFO     | sum of square deviations: 991028350038.2705
[2025-11-20 21:27:02] 2025-11-20 20:26:05,092 | INFO     | sum of deviations: 2968523814043.914
[2025-11-20 21:27:02] 2025-11-20 20:26:05,093 | INFO     | mean x: 1763624958.4025798
[2025-11-20 21:27:02] 2025-11-20 20:26:05,093 | INFO     | mean y: 2880816.758995248
[2025-11-20 21:27:02] 2025-11-20 20:26:05,093 | INFO     | intersect: -5279876924.589263
[2025-11-20 21:27:02] 2025-11-20 20:26:05,095 | INFO     | chi2: 7.2561139260764485
[2025-11-20 21:27:02] 2025-11-20 20:26:05,095 | INFO     | current memory leak: 3.00 B/s (using 1473 data points, chi2=7.26)
[2025-11-20 21:27:02] 2025-11-20 20:26:05,098 | INFO     | could have reported an average CPU frequency of 1999 MHz (50 samples)
[2025-11-20 21:27:02] 2025-11-20 20:26:05,098 | INFO     | ..............................
[2025-11-20 21:27:02] 2025-11-20 20:26:05,098 | INFO     | . Timing measurements:
[2025-11-20 21:27:02] 2025-11-20 20:26:05,098 | INFO     | . get job = 0 s
[2025-11-20 21:27:02] 2025-11-20 20:26:05,098 | INFO     | . initial setup = 15 s
[2025-11-20 21:27:02] 2025-11-20 20:26:05,099 | INFO     | . payload setup = 166 s
[2025-11-20 21:27:02] 2025-11-20 20:26:05,099 | INFO     | . stage-in = 0 s
[2025-11-20 21:27:02] 2025-11-20 20:26:05,099 | INFO     | . payload execution = 90955 s
[2025-11-20 21:27:02] 2025-11-20 20:26:05,099 | INFO     | . stage-out = 5 s
[2025-11-20 21:27:02] 2025-11-20 20:26:05,099 | INFO     | . log creation = 2 s
[2025-11-20 21:27:02] 2025-11-20 20:26:05,099 | INFO     | ..............................
[2025-11-20 21:27:02] 2025-11-20 20:26:05,239 | INFO     | 
[2025-11-20 21:27:02] 2025-11-20 20:26:05,239 | INFO     | job summary report
[2025-11-20 21:27:02] 2025-11-20 20:26:05,239 | INFO     | --------------------------------------------------
[2025-11-20 21:27:02] 2025-11-20 20:26:05,240 | INFO     | PanDA job id: 6891572077
[2025-11-20 21:27:02] 2025-11-20 20:26:05,240 | INFO     | task id: 47493068
[2025-11-20 21:27:02] 2025-11-20 20:26:05,240 | INFO     | errors: (none)
[2025-11-20 21:27:02] 2025-11-20 20:26:05,240 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-20 21:27:02] 2025-11-20 20:26:05,240 | INFO     | pilot state: finished 
[2025-11-20 21:27:02] 2025-11-20 20:26:05,240 | INFO     | transexitcode: 0
[2025-11-20 21:27:02] 2025-11-20 20:26:05,240 | INFO     | exeerrorcode: 0
[2025-11-20 21:27:02] 2025-11-20 20:26:05,240 | INFO     | exeerrordiag: 
[2025-11-20 21:27:02] 2025-11-20 20:26:05,240 | INFO     | exitcode: 0
[2025-11-20 21:27:02] 2025-11-20 20:26:05,240 | INFO     | exitmsg: OK
[2025-11-20 21:27:02] 2025-11-20 20:26:05,240 | INFO     | cpuconsumptiontime: 341446 s
[2025-11-20 21:27:02] 2025-11-20 20:26:05,241 | INFO     | nevents: 1000
[2025-11-20 21:27:02] 2025-11-20 20:26:05,241 | INFO     | neventsw: 0
[2025-11-20 21:27:02] 2025-11-20 20:26:05,241 | INFO     | pid: 15819
[2025-11-20 21:27:02] 2025-11-20 20:26:05,241 | INFO     | pgrp: 15819
[2025-11-20 21:27:02] 2025-11-20 20:26:05,241 | INFO     | corecount: 8
[2025-11-20 21:27:02] 2025-11-20 20:26:05,241 | INFO     | event service: False
[2025-11-20 21:27:02] 2025-11-20 20:26:05,241 | INFO     | sizes: {0: 2296372, 1: 2297058, 2: 2297257, 13: 2297257, 24: 2297313, 34: 2297341, 45: 2297497, 56: 2297525, 67: 2297553, 77: 2297581, 88: 2297637, 99: 2297945, 10
[2025-11-20 21:27:02] 2025-11-20 20:26:05,241 | INFO     | --------------------------------------------------
[2025-11-20 21:27:02] 2025-11-20 20:26:05,241 | INFO     | 
[2025-11-20 21:27:02] 2025-11-20 20:26:05,242 | INFO     | executing command: ls -lF /var/lib/boinc/slots/16
[2025-11-20 21:27:02] 2025-11-20 20:26:05,309 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-20 21:27:02] 2025-11-20 20:26:05,309 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-20 21:27:02] 2025-11-20 20:26:05,309 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-20 21:27:02] 2025-11-20 20:26:05,309 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-20 21:27:02] 2025-11-20 20:26:05,309 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-20 21:27:02] 2025-11-20 20:26:05,310 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-20 21:27:02] 2025-11-20 20:26:05,310 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-20 21:27:02] 2025-11-20 20:26:05,310 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-20 21:27:02] 2025-11-20 20:26:05,310 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-20 21:27:02] 2025-11-20 20:26:05,310 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-20 21:27:02] 2025-11-20 20:26:05,310 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-20 21:27:02] 2025-11-20 20:26:05,310 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-20 21:27:02] 2025-11-20 20:26:05,310 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-20 21:27:02] 2025-11-20 20:26:05,310 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-20 21:27:02] 2025-11-20 20:26:05,310 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-20 21:27:02] 2025-11-20 20:26:05,311 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-20 21:27:02] 2025-11-20 20:26:05,311 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-20 21:27:02] 2025-11-20 20:26:05,311 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-20 21:27:02] 2025-11-20 20:26:05,311 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-20 21:27:02] 2025-11-20 20:26:05,311 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-20 21:27:02] 2025-11-20 20:26:05,311 | INFO     | job 6891572077 has completed (purged errors)
[2025-11-20 21:27:02] 2025-11-20 20:26:05,311 | INFO     | overall cleanup function is called
[2025-11-20 21:27:02] 2025-11-20 20:26:05,605 | INFO     | PID=9210 has CPU usage=3.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-11-20 21:27:02] 2025-11-20 20:26:05,605 | INFO     | .. there are 9 such processes running
[2025-11-20 21:27:02] 2025-11-20 20:26:06,330 | INFO     | --- collectZombieJob: --- 10, [15819]
[2025-11-20 21:27:02] 2025-11-20 20:26:06,330 | INFO     | zombie collector waiting for pid 15819
[2025-11-20 21:27:02] 2025-11-20 20:26:06,330 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-20 21:27:02] 2025-11-20 20:26:06,331 | INFO     | collected zombie processes
[2025-11-20 21:27:02] 2025-11-20 20:26:06,331 | INFO     | will attempt to kill all subprocesses of pid=15819
[2025-11-20 21:27:02] 2025-11-20 20:26:06,468 | INFO     | process IDs to be killed: [15819] (in reverse order)
[2025-11-20 21:27:02] 2025-11-20 20:26:06,541 | WARNING  | found no corresponding commands to process id(s)
[2025-11-20 21:27:02] 2025-11-20 20:26:06,541 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-20 21:27:02] 2025-11-20 20:26:06,546 | INFO     | did not find any defunct processes belonging to 15819
[2025-11-20 21:27:02] 2025-11-20 20:26:06,550 | INFO     | did not find any defunct processes belonging to 15819
[2025-11-20 21:27:02] 2025-11-20 20:26:06,553 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-20 21:27:02] 2025-11-20 20:26:06,553 | INFO     | ready for new job
[2025-11-20 21:27:02] 2025-11-20 20:26:06,553 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-20 21:27:02] 2025-11-20 20:26:06,560 | INFO     | ***************************************
[2025-11-20 21:27:02] 2025-11-20 20:26:06,560 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-20 21:27:02] 2025-11-20 20:26:06,560 | INFO     | ***************************************
[2025-11-20 21:27:02] 2025-11-20 20:26:06,560 | INFO     | 
[2025-11-20 21:27:02] 2025-11-20 20:26:06,561 | INFO     | pilot is running in a VM
[2025-11-20 21:27:02] 2025-11-20 20:26:06,561 | INFO     | architecture information:
[2025-11-20 21:27:02] 2025-11-20 20:26:06,562 | INFO     | executing command: cat /etc/os-release
[2025-11-20 21:27:02] 2025-11-20 20:26:06,591 | INFO     | cat /etc/os-release:
[2025-11-20 21:27:02] NAME="CentOS Linux"
[2025-11-20 21:27:02] VERSION="7 (Core)"
[2025-11-20 21:27:02] ID="centos"
[2025-11-20 21:27:02] ID_LIKE="rhel fedora"
[2025-11-20 21:27:02] VERSION_ID="7"
[2025-11-20 21:27:02] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-20 21:27:02] ANSI_COLOR="0;31"
[2025-11-20 21:27:02] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-20 21:27:02] HOME_URL="https://www.centos.org/"
[2025-11-20 21:27:02] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-20 21:27:02] 
[2025-11-20 21:27:02] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-20 21:27:02] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-20 21:27:02] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-20 21:27:02] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-20 21:27:02] 
[2025-11-20 21:27:02] 2025-11-20 20:26:06,591 | INFO     | ***************************************
[2025-11-20 21:27:02] 2025-11-20 20:26:07,095 | INFO     | executing command: df -mP /var/lib/boinc/slots/16
[2025-11-20 21:27:02] 2025-11-20 20:26:07,264 | INFO     | sufficient remaining disk space (493344522240 B)
[2025-11-20 21:27:02] 2025-11-20 20:26:07,265 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-20 21:27:02] 2025-11-20 20:26:07,265 | INFO     | current server update state: UPDATING_FINAL
[2025-11-20 21:27:02] 2025-11-20 20:26:07,265 | INFO     | update_server=False
[2025-11-20 21:27:02] 2025-11-20 20:26:07,265 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-20 21:27:02] 2025-11-20 20:26:07,266 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-20 21:27:02] 2025-11-20 20:26:07,266 | INFO     | aborting loop
[2025-11-20 21:27:02] 2025-11-20 20:26:07,569 | INFO     | all data control threads have been joined
[2025-11-20 21:27:02] 2025-11-20 20:26:07,604 | INFO     | all job control threads have been joined
[2025-11-20 21:27:02] 2025-11-20 20:26:08,271 | INFO     | [job] retrieve thread has finished
[2025-11-20 21:27:02] 2025-11-20 20:26:08,272 | INFO     | [job] job monitor thread has finished
[2025-11-20 21:27:02] 2025-11-20 20:26:08,327 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-20 21:27:02] 2025-11-20 20:26:08,395 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-20 21:27:02] 2025-11-20 20:26:08,404 | INFO     | all payload control threads have been joined
[2025-11-20 21:27:02] 2025-11-20 20:26:08,575 | INFO     | [data] control thread has finished
[2025-11-20 21:27:02] 2025-11-20 20:26:08,609 | INFO     | [job] control thread has finished
[2025-11-20 21:27:02] 2025-11-20 20:26:09,049 | INFO     | [payload] validate_post thread has finished
[2025-11-20 21:27:02] 2025-11-20 20:26:09,184 | INFO     | [payload] execute_payloads thread has finished
[2025-11-20 21:27:02] 2025-11-20 20:26:09,249 | INFO     | [data] copytool_in thread has finished
[2025-11-20 21:27:02] 2025-11-20 20:26:09,362 | INFO     | [payload] validate_pre thread has finished
[2025-11-20 21:27:02] 2025-11-20 20:26:09,411 | INFO     | [payload] control thread has finished
[2025-11-20 21:27:02] 2025-11-20 20:26:09,441 | INFO     | [payload] failed_post thread has finished
[2025-11-20 21:27:02] 2025-11-20 20:26:09,475 | INFO     | [job] validate thread has finished
[2025-11-20 21:27:02] 2025-11-20 20:26:09,640 | INFO     | [job] create_data_payload thread has finished
[2025-11-20 21:27:02] 2025-11-20 20:26:10,254 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-20 21:27:02] 2025-11-20 20:26:10,333 | INFO     | [data] copytool_out thread has finished
[2025-11-20 21:27:02] 2025-11-20 20:26:10,568 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-20 21:27:02] 2025-11-20 20:26:11,259 | INFO     | [job] queue monitor thread has finished
[2025-11-20 21:27:02] 2025-11-20 20:26:14,577 | INFO     | [data] queue_monitor thread has finished
[2025-11-20 21:27:02] 2025-11-20 20:26:37,802 | INFO     | PID=9210 has CPU usage=1.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-11-20 21:27:02] 2025-11-20 20:26:37,803 | INFO     | .. there are 9 such processes running
[2025-11-20 21:27:02] 2025-11-20 20:26:37,803 | INFO     | found 0 job(s) in 20 queues
[2025-11-20 21:27:02] 2025-11-20 20:26:37,803 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-20 21:27:02] 2025-11-20 20:26:37,803 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-20 21:27:02] 2025-11-20 20:26:50,968 | INFO     | [monitor] cgroup control has ended
[2025-11-20 21:27:02] 2025-11-20 20:26:52,200 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140278331758400)>', '<ExcThread(monitor, started 140277591308032)>']
[2025-11-20 21:27:02] 2025-11-20 20:26:52,893 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-20 21:27:02] 2025-11-20 20:26:52,893 | INFO     | [monitor] control thread has ended
[2025-11-20 21:27:02] 2025-11-20 20:26:57,226 | INFO     | all workflow threads have been joined
[2025-11-20 21:27:02] 2025-11-20 20:26:57,226 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-20 21:27:02] 2025-11-20 20:26:57,227 | INFO     | traces error code: 0
[2025-11-20 21:27:02] 2025-11-20 20:26:57,227 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-20 21:27:02] 2025-11-20 20:26:57,673 [wrapper] ==== pilot stdout END ====
[2025-11-20 21:27:02] 2025-11-20 20:26:57,767 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-20 21:27:02] 2025-11-20 20:26:57,839 [wrapper] pilotpid: 9210
[2025-11-20 21:27:02] 2025-11-20 20:26:57,909 [wrapper] Pilot exit status: 0
[2025-11-20 21:27:02] 2025-11-20 20:26:58,299 [wrapper] pandaids: 6891572077
[2025-11-20 21:27:02] 2025-11-20 20:26:59,125 [wrapper] cleanup supervisor_pilot  3031 9211
[2025-11-20 21:27:02] 2025-11-20 20:26:59,245 [wrapper] Test setup, not cleaning
[2025-11-20 21:27:02] 2025-11-20 20:26:59,378 [wrapper] apfmon messages muted
[2025-11-20 21:27:02] 2025-11-20 20:26:59,501 [wrapper] ==== wrapper stdout END ====
[2025-11-20 21:27:02] 2025-11-20 20:26:59,598 [wrapper] ==== wrapper stderr END ====
[2025-11-20 21:27:02]  *** Error codes and diagnostics ***
[2025-11-20 21:27:02]     "exeErrorCode": 0,
[2025-11-20 21:27:02]     "exeErrorDiag": "",
[2025-11-20 21:27:02]     "pilotErrorCode": 0,
[2025-11-20 21:27:02]     "pilotErrorDiag": "",
[2025-11-20 21:27:02]  *** Listing of results directory ***
[2025-11-20 21:27:02] total 1328488
[2025-11-20 21:27:02] -rw-r--r--. 1 boinc boinc    576529 Nov 18 16:47 pilot3.tar.gz
[2025-11-20 21:27:02] -rw-r--r--. 1 boinc boinc      5112 Nov 18 17:16 queuedata.json
[2025-11-20 21:27:02] -rwx------. 1 boinc boinc     36292 Nov 18 17:17 runpilot2-wrapper.sh
[2025-11-20 21:27:02] -rw-r--r--. 1 boinc boinc       100 Nov 19 19:57 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-20 21:27:02] -rwxr-xr-x. 1 boinc boinc      7986 Nov 19 19:57 run_atlas
[2025-11-20 21:27:02] -rw-r--r--. 1 boinc boinc       105 Nov 19 19:57 job.xml
[2025-11-20 21:27:02] -rw-r--r--. 2 boinc boinc 409667291 Nov 19 19:57 EVNT.47493065._000325.pool.root.1
[2025-11-20 21:27:02] -rw-r--r--. 1 boinc boinc      6391 Nov 19 19:57 init_data.xml
[2025-11-20 21:27:02] -rw-r--r--. 2 boinc boinc     15120 Nov 19 19:57 start_atlas.sh
[2025-11-20 21:27:02] drwxrwx--x. 2 boinc boinc        68 Nov 19 19:57 shared
[2025-11-20 21:27:02] -rw-r--r--. 2 boinc boinc    590099 Nov 19 19:57 input.tar.gz
[2025-11-20 21:27:02] -rw-r--r--. 1 boinc boinc         0 Nov 19 19:57 boinc_lockfile
[2025-11-20 21:27:02] -rw-r--r--. 1 boinc boinc      2773 Nov 19 19:58 pandaJob.out
[2025-11-20 21:27:02] -rw-------. 1 boinc boinc    989434 Nov 19 20:02 agis_schedconf.cvmfs.json
[2025-11-20 21:27:02] drwx------. 5 boinc boinc      4096 Nov 19 20:02 pilot3
[2025-11-20 21:27:02] -rw-r--r--. 1 boinc boinc       533 Nov 20 21:00 boinc_task_state.xml
[2025-11-20 21:27:02] -rw-------. 1 boinc boinc 917363011 Nov 20 21:22 HITS.47493068._003250.pool.root.1
[2025-11-20 21:27:02] -rw-------. 1 boinc boinc      1034 Nov 20 21:24 memory_monitor_summary.json
[2025-11-20 21:27:02] -rw-------. 1 boinc boinc   1526164 Nov 20 21:24 agis_ddmendpoints.agis.ALL.json
[2025-11-20 21:27:02] -rw-------. 1 boinc boinc   2554294 Nov 20 21:24 log.47493068._003250.job.log.tgz.1
[2025-11-20 21:27:02] -rw-------. 1 boinc boinc      8628 Nov 20 21:26 heartbeat.json
[2025-11-20 21:27:02] -rw-------. 1 boinc boinc        95 Nov 20 21:26 pilot_heartbeat.json
[2025-11-20 21:27:02] -rw-r--r--. 1 boinc boinc      8192 Nov 20 21:26 boinc_mmap_file
[2025-11-20 21:27:02] -rw-r--r--. 1 boinc boinc        29 Nov 20 21:26 wrapper_checkpoint.txt
[2025-11-20 21:27:02] -rw-------. 1 boinc boinc      4884 Nov 20 21:26 pilotlog.txt
[2025-11-20 21:27:02] -rw-------. 1 boinc boinc  12157564 Nov 20 21:26 log.47493068._003250.job.log.1
[2025-11-20 21:27:02] -rw-------. 1 boinc boinc       353 Nov 20 21:27 output.list
[2025-11-20 21:27:02] -rw-r--r--. 1 boinc boinc       620 Nov 20 21:27 runtime_log
[2025-11-20 21:27:02] -rw-------. 1 boinc boinc  14735360 Nov 20 21:27 result.tar.gz
[2025-11-20 21:27:02] -rw-r--r--. 1 boinc boinc      8717 Nov 20 21:27 runtime_log.err
[2025-11-20 21:27:02] -rw-------. 1 boinc boinc       662 Nov 20 21:27 MZuKDmWZdf8n9Rq4apOajLDm4fhM0noT9bVo0NGKDm4SFKDmMhuIym.diag
[2025-11-20 21:27:02] -rw-r--r--. 1 boinc boinc     21507 Nov 20 21:27 stderr.txt
[2025-11-20 21:27:02] HITS file was successfully produced:
[2025-11-20 21:27:02] -rw-------. 1 boinc boinc 917363011 Nov 20 21:22 shared/HITS.pool.root.1
[2025-11-20 21:27:02]  *** Contents of shared directory: ***
[2025-11-20 21:27:02] total 1310920
[2025-11-20 21:27:02] -rw-r--r--. 2 boinc boinc 409667291 Nov 19 19:57 ATLAS.root_0
[2025-11-20 21:27:02] -rw-r--r--. 2 boinc boinc     15120 Nov 19 19:57 start_atlas.sh
[2025-11-20 21:27:02] -rw-r--r--. 2 boinc boinc    590099 Nov 19 19:57 input.tar.gz
[2025-11-20 21:27:02] -rw-------. 1 boinc boinc 917363011 Nov 20 21:22 HITS.pool.root.1
[2025-11-20 21:27:02] -rw-------. 1 boinc boinc  14735360 Nov 20 21:27 result.tar.gz
21:27:03 (5403): run_atlas exited; CPU time 341898.694338
21:27:03 (5403): called boinc_finish(0)

</stderr_txt>
]]>

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