Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
21:09:59 (19902): wrapper (7.7.26015): starting
21:09:59 (19902): wrapper: running run_atlas (--nthreads 8)
[2025-11-19 21:09:59] Arguments: --nthreads 8
[2025-11-19 21:09:59] Threads: 8
[2025-11-19 21:09:59] Checking for CVMFS
[2025-11-19 21:10:00] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-19 21:10:00] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-19 21:10:00] Running cvmfs_config stat atlas.cern.ch
[2025-11-19 21:10:01] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-19 21:10:01] 2.11.2.0 25230 275599 142600 153055 1 85 21549921 25165824 4251 130560 3 119757882 99.848 84564415 3177 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-19 21:10:01] CVMFS is ok
[2025-11-19 21:10:01] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-19 21:10:01] Checking for apptainer binary...
[2025-11-19 21:10:02] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-19 21:10:02] Running /usr/bin/apptainer --version
[2025-11-19 21:10:02] apptainer version 1.3.2-1.el7
[2025-11-19 21:10:02] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-19 21:10:17] cg-vwn359.simple-grid.lan
[2025-11-19 21:10:17] apptainer works
[2025-11-19 21:10:17] Set ATHENA_PROC_NUMBER=8
[2025-11-19 21:10:17] Set ATHENA_CORE_NUMBER=8
[2025-11-19 21:10:17] Starting ATLAS job with PandaID=6891561591
[2025-11-19 21:10:17] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/14 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-20 23:00:38]  *** The last 200 lines of the pilot log: ***
[2025-11-20 23:00:38] 2025-11-20 21:59:51,145 | INFO     | time since job start (92712s) is within the limit (172800.0s)
[2025-11-20 23:00:38] 2025-11-20 21:59:51,474 | INFO     | monitor loop #6235: job 0:6891561591 is in state 'finished'
[2025-11-20 23:00:38] 2025-11-20 21:59:51,475 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-20 23:00:38] 2025-11-20 21:59:52,422 | INFO     | PID=23695 has CPU usage=1.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-20 23:00:38] 2025-11-20 21:59:52,423 | INFO     | .. there are 9 such processes running
[2025-11-20 23:00:38] 2025-11-20 21:59:53,424 | INFO     | time since job start (92714s) is within the limit (172800.0s)
[2025-11-20 23:00:38] 2025-11-20 21:59:53,984 | INFO     | monitor loop #6236: job 0:6891561591 is in state 'finished'
[2025-11-20 23:00:38] 2025-11-20 21:59:53,985 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-20 23:00:38] 2025-11-20 21:59:55,433 | INFO     | time since job start (92716s) is within the limit (172800.0s)
[2025-11-20 23:00:38] 2025-11-20 21:59:56,497 | INFO     | monitor loop #6237: job 0:6891561591 is in state 'finished'
[2025-11-20 23:00:38] 2025-11-20 21:59:56,498 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-20 23:00:38] 2025-11-20 21:59:57,445 | INFO     | time since job start (92718s) is within the limit (172800.0s)
[2025-11-20 23:00:38] 2025-11-20 21:59:59,007 | INFO     | monitor loop #6238: job 0:6891561591 is in state 'finished'
[2025-11-20 23:00:38] 2025-11-20 21:59:59,008 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-20 23:00:38] 2025-11-20 21:59:59,452 | INFO     | time since job start (92720s) is within the limit (172800.0s)
[2025-11-20 23:00:38] 2025-11-20 22:00:00,513 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-20 23:00:38] 2025-11-20 22:00:00,514 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-11-20 23:00:38] 2025-11-20 22:00:00,516 | INFO     | using path: /var/lib/boinc/slots/14/PanDA_Pilot-6891561591/memory_monitor_summary.json (trf name=prmon)
[2025-11-20 23:00:38] 2025-11-20 22:00:00,517 | INFO     | extracted standard info from prmon json
[2025-11-20 23:00:38] 2025-11-20 22:00:00,518 | INFO     | extracted standard memory fields from prmon json
[2025-11-20 23:00:38] 2025-11-20 22:00:00,518 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-20 23:00:38] 2025-11-20 22:00:00,548 | INFO     | fitting pss+swap vs Time
[2025-11-20 23:00:38] 2025-11-20 22:00:00,551 | INFO     | sum of square deviations: 1067596936392.5049
[2025-11-20 23:00:38] 2025-11-20 22:00:00,617 | INFO     | sum of deviations: 3501947585349.401
[2025-11-20 23:00:38] 2025-11-20 22:00:00,618 | INFO     | mean x: 1763629836.7198675
[2025-11-20 23:00:38] 2025-11-20 22:00:00,618 | INFO     | mean y: 2823817.426490066
[2025-11-20 23:00:38] 2025-11-20 22:00:00,618 | INFO     | intersect: -5782261393.684142
[2025-11-20 23:00:38] 2025-11-20 22:00:00,620 | INFO     | chi2: 32.1171834431766
[2025-11-20 23:00:38] 2025-11-20 22:00:00,622 | INFO     | sum of square deviations: 1057027262797.5372
[2025-11-20 23:00:38] 2025-11-20 22:00:00,691 | INFO     | sum of deviations: 3982019306487.316
[2025-11-20 23:00:38] 2025-11-20 22:00:00,692 | INFO     | mean x: 1763629684.2239203
[2025-11-20 23:00:38] 2025-11-20 22:00:00,692 | INFO     | mean y: 2830742.7023255816
[2025-11-20 23:00:38] 2025-11-20 22:00:00,692 | INFO     | intersect: -6641091982.1355915
[2025-11-20 23:00:38] 2025-11-20 22:00:00,694 | INFO     | chi2: 29.03922381947613
[2025-11-20 23:00:38] 2025-11-20 22:00:00,694 | INFO     | current chi2=29.03922381947613 (change=9.58352910723369 %)
[2025-11-20 23:00:38] 2025-11-20 22:00:00,694 | INFO     | right removable region: 1504
[2025-11-20 23:00:38] 2025-11-20 22:00:00,697 | INFO     | sum of square deviations: 1057026139177.5374
[2025-11-20 23:00:38] 2025-11-20 22:00:00,760 | INFO     | sum of deviations: 2859487437685.294
[2025-11-20 23:00:38] 2025-11-20 22:00:00,760 | INFO     | mean x: 1763629989.2239203
[2025-11-20 23:00:38] 2025-11-20 22:00:00,761 | INFO     | mean y: 2833085.9249169435
[2025-11-20 23:00:38] 2025-11-20 22:00:00,761 | INFO     | intersect: -4768172674.476453
[2025-11-20 23:00:38] 2025-11-20 22:00:00,763 | INFO     | chi2: 27.185737973937368
[2025-11-20 23:00:38] 2025-11-20 22:00:00,763 | INFO     | current chi2=27.185737973937368 (change=15.354539036600775 %)
[2025-11-20 23:00:38] 2025-11-20 22:00:00,763 | INFO     | left removable region: 10
[2025-11-20 23:00:38] 2025-11-20 22:00:00,765 | INFO     | sum of square deviations: 1034017810820.4398
[2025-11-20 23:00:38] 2025-11-20 22:00:00,826 | INFO     | sum of deviations: 2893653980247.042
[2025-11-20 23:00:38] 2025-11-20 22:00:00,826 | INFO     | mean x: 1763629958.7329316
[2025-11-20 23:00:38] 2025-11-20 22:00:00,826 | INFO     | mean y: 2849719.746987952
[2025-11-20 23:00:38] 2025-11-20 22:00:00,827 | INFO     | intersect: -4932592200.466398
[2025-11-20 23:00:38] 2025-11-20 22:00:00,828 | INFO     | chi2: 19.760610041796426
[2025-11-20 23:00:38] 2025-11-20 22:00:00,829 | INFO     | current memory leak: 2.80 B/s (using 1494 data points, chi2=19.76)
[2025-11-20 23:00:38] 2025-11-20 22:00:00,831 | INFO     | could have reported an average CPU frequency of 1999 MHz (51 samples)
[2025-11-20 23:00:38] 2025-11-20 22:00:00,831 | INFO     | ..............................
[2025-11-20 23:00:38] 2025-11-20 22:00:00,832 | INFO     | . Timing measurements:
[2025-11-20 23:00:38] 2025-11-20 22:00:00,832 | INFO     | . get job = 0 s
[2025-11-20 23:00:38] 2025-11-20 22:00:00,832 | INFO     | . initial setup = 6 s
[2025-11-20 23:00:38] 2025-11-20 22:00:00,832 | INFO     | . payload setup = 162 s
[2025-11-20 23:00:38] 2025-11-20 22:00:00,832 | INFO     | . stage-in = 0 s
[2025-11-20 23:00:38] 2025-11-20 22:00:00,832 | INFO     | . payload execution = 92228 s
[2025-11-20 23:00:38] 2025-11-20 22:00:00,832 | INFO     | . stage-out = 5 s
[2025-11-20 23:00:38] 2025-11-20 22:00:00,832 | INFO     | . log creation = 2 s
[2025-11-20 23:00:38] 2025-11-20 22:00:00,832 | INFO     | ..............................
[2025-11-20 23:00:38] 2025-11-20 22:00:00,958 | INFO     | 
[2025-11-20 23:00:38] 2025-11-20 22:00:00,958 | INFO     | job summary report
[2025-11-20 23:00:38] 2025-11-20 22:00:00,958 | INFO     | --------------------------------------------------
[2025-11-20 23:00:38] 2025-11-20 22:00:00,959 | INFO     | PanDA job id: 6891561591
[2025-11-20 23:00:38] 2025-11-20 22:00:00,959 | INFO     | task id: 47493068
[2025-11-20 23:00:38] 2025-11-20 22:00:00,959 | INFO     | errors: (none)
[2025-11-20 23:00:38] 2025-11-20 22:00:00,959 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-20 23:00:38] 2025-11-20 22:00:00,959 | INFO     | pilot state: finished 
[2025-11-20 23:00:38] 2025-11-20 22:00:00,959 | INFO     | transexitcode: 0
[2025-11-20 23:00:38] 2025-11-20 22:00:00,959 | INFO     | exeerrorcode: 0
[2025-11-20 23:00:38] 2025-11-20 22:00:00,959 | INFO     | exeerrordiag: 
[2025-11-20 23:00:38] 2025-11-20 22:00:00,959 | INFO     | exitcode: 0
[2025-11-20 23:00:38] 2025-11-20 22:00:00,959 | INFO     | exitmsg: OK
[2025-11-20 23:00:38] 2025-11-20 22:00:00,960 | INFO     | cpuconsumptiontime: 339334 s
[2025-11-20 23:00:38] 2025-11-20 22:00:00,960 | INFO     | nevents: 1000
[2025-11-20 23:00:38] 2025-11-20 22:00:00,960 | INFO     | neventsw: 0
[2025-11-20 23:00:38] 2025-11-20 22:00:00,960 | INFO     | pid: 30287
[2025-11-20 23:00:38] 2025-11-20 22:00:00,960 | INFO     | pgrp: 30287
[2025-11-20 23:00:38] 2025-11-20 22:00:00,960 | INFO     | corecount: 8
[2025-11-20 23:00:38] 2025-11-20 22:00:00,960 | INFO     | event service: False
[2025-11-20 23:00:38] 2025-11-20 22:00:00,960 | INFO     | sizes: {0: 2296368, 1: 2296970, 2: 2297253, 3: 2297253, 14: 2297281, 24: 2297309, 35: 2297465, 46: 2297493, 57: 2297521, 67: 2297549, 78: 2297577, 89: 2297913, 100
[2025-11-20 23:00:38] 2025-11-20 22:00:00,960 | INFO     | --------------------------------------------------
[2025-11-20 23:00:38] 2025-11-20 22:00:00,960 | INFO     | 
[2025-11-20 23:00:38] 2025-11-20 22:00:00,961 | INFO     | executing command: ls -lF /var/lib/boinc/slots/14
[2025-11-20 23:00:38] 2025-11-20 22:00:01,460 | INFO     | time since job start (92722s) is within the limit (172800.0s)
[2025-11-20 23:00:38] 2025-11-20 22:00:01,670 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-20 23:00:38] 2025-11-20 22:00:01,670 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-20 23:00:38] 2025-11-20 22:00:01,671 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-20 23:00:38] 2025-11-20 22:00:01,671 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-20 23:00:38] 2025-11-20 22:00:01,671 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-20 23:00:38] 2025-11-20 22:00:01,671 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-20 23:00:38] 2025-11-20 22:00:01,671 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-20 23:00:38] 2025-11-20 22:00:01,671 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-20 23:00:38] 2025-11-20 22:00:01,671 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-20 23:00:38] 2025-11-20 22:00:01,671 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-20 23:00:38] 2025-11-20 22:00:01,671 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-20 23:00:38] 2025-11-20 22:00:01,671 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-20 23:00:38] 2025-11-20 22:00:01,671 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-20 23:00:38] 2025-11-20 22:00:01,672 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-20 23:00:38] 2025-11-20 22:00:01,672 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-20 23:00:38] 2025-11-20 22:00:01,672 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-20 23:00:38] 2025-11-20 22:00:01,672 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-20 23:00:38] 2025-11-20 22:00:01,672 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-20 23:00:38] 2025-11-20 22:00:01,672 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-20 23:00:38] 2025-11-20 22:00:01,672 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-20 23:00:38] 2025-11-20 22:00:01,672 | INFO     | job 6891561591 has completed (purged errors)
[2025-11-20 23:00:38] 2025-11-20 22:00:01,673 | INFO     | overall cleanup function is called
[2025-11-20 23:00:38] 2025-11-20 22:00:02,694 | INFO     | --- collectZombieJob: --- 10, [30287]
[2025-11-20 23:00:38] 2025-11-20 22:00:02,695 | INFO     | zombie collector waiting for pid 30287
[2025-11-20 23:00:38] 2025-11-20 22:00:02,695 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-20 23:00:38] 2025-11-20 22:00:02,695 | INFO     | collected zombie processes
[2025-11-20 23:00:38] 2025-11-20 22:00:02,695 | INFO     | will attempt to kill all subprocesses of pid=30287
[2025-11-20 23:00:38] 2025-11-20 22:00:02,838 | INFO     | process IDs to be killed: [30287] (in reverse order)
[2025-11-20 23:00:38] 2025-11-20 22:00:03,907 | WARNING  | found no corresponding commands to process id(s)
[2025-11-20 23:00:38] 2025-11-20 22:00:03,907 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-20 23:00:38] 2025-11-20 22:00:03,910 | INFO     | did not find any defunct processes belonging to 30287
[2025-11-20 23:00:38] 2025-11-20 22:00:03,913 | INFO     | did not find any defunct processes belonging to 30287
[2025-11-20 23:00:38] 2025-11-20 22:00:03,973 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-20 23:00:38] 2025-11-20 22:00:03,973 | INFO     | ready for new job
[2025-11-20 23:00:38] 2025-11-20 22:00:03,973 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-20 23:00:38] 2025-11-20 22:00:03,980 | INFO     | ***************************************
[2025-11-20 23:00:38] 2025-11-20 22:00:03,980 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-20 23:00:38] 2025-11-20 22:00:03,980 | INFO     | ***************************************
[2025-11-20 23:00:38] 2025-11-20 22:00:03,980 | INFO     | 
[2025-11-20 23:00:38] 2025-11-20 22:00:03,981 | INFO     | pilot is running in a VM
[2025-11-20 23:00:38] 2025-11-20 22:00:03,981 | INFO     | architecture information:
[2025-11-20 23:00:38] 2025-11-20 22:00:03,989 | INFO     | executing command: cat /etc/os-release
[2025-11-20 23:00:38] 2025-11-20 22:00:04,270 | INFO     | cat /etc/os-release:
[2025-11-20 23:00:38] NAME="CentOS Linux"
[2025-11-20 23:00:38] VERSION="7 (Core)"
[2025-11-20 23:00:38] ID="centos"
[2025-11-20 23:00:38] ID_LIKE="rhel fedora"
[2025-11-20 23:00:38] VERSION_ID="7"
[2025-11-20 23:00:38] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-20 23:00:38] ANSI_COLOR="0;31"
[2025-11-20 23:00:38] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-20 23:00:38] HOME_URL="https://www.centos.org/"
[2025-11-20 23:00:38] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-20 23:00:38] 
[2025-11-20 23:00:38] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-20 23:00:38] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-20 23:00:38] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-20 23:00:38] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-20 23:00:38] 
[2025-11-20 23:00:38] 2025-11-20 22:00:04,270 | INFO     | ***************************************
[2025-11-20 23:00:38] 2025-11-20 22:00:04,774 | INFO     | executing command: df -mP /var/lib/boinc/slots/14
[2025-11-20 23:00:38] 2025-11-20 22:00:04,975 | INFO     | sufficient remaining disk space (494633222144 B)
[2025-11-20 23:00:38] 2025-11-20 22:00:04,976 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-20 23:00:38] 2025-11-20 22:00:04,976 | INFO     | current server update state: UPDATING_FINAL
[2025-11-20 23:00:38] 2025-11-20 22:00:04,976 | INFO     | update_server=False
[2025-11-20 23:00:38] 2025-11-20 22:00:04,976 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-20 23:00:38] 2025-11-20 22:00:04,976 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-20 23:00:38] 2025-11-20 22:00:05,022 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-20 23:00:38] 2025-11-20 22:00:05,023 | INFO     | aborting loop
[2025-11-20 23:00:38] 2025-11-20 22:00:05,323 | INFO     | all data control threads have been joined
[2025-11-20 23:00:38] 2025-11-20 22:00:05,659 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-20 23:00:38] 2025-11-20 22:00:05,664 | INFO     | all job control threads have been joined
[2025-11-20 23:00:38] 2025-11-20 22:00:05,775 | INFO     | all payload control threads have been joined
[2025-11-20 23:00:38] 2025-11-20 22:00:05,982 | INFO     | [job] retrieve thread has finished
[2025-11-20 23:00:38] 2025-11-20 22:00:05,983 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-20 23:00:38] 2025-11-20 22:00:05,990 | INFO     | [payload] failed_post thread has finished
[2025-11-20 23:00:38] 2025-11-20 22:00:06,028 | INFO     | [job] job monitor thread has finished
[2025-11-20 23:00:38] 2025-11-20 22:00:06,190 | INFO     | [job] create_data_payload thread has finished
[2025-11-20 23:00:38] 2025-11-20 22:00:06,329 | INFO     | [data] control thread has finished
[2025-11-20 23:00:38] 2025-11-20 22:00:06,465 | INFO     | [payload] execute_payloads thread has finished
[2025-11-20 23:00:38] 2025-11-20 22:00:06,580 | INFO     | [payload] validate_post thread has finished
[2025-11-20 23:00:38] 2025-11-20 22:00:06,670 | INFO     | [job] control thread has finished
[2025-11-20 23:00:38] 2025-11-20 22:00:06,698 | INFO     | [job] validate thread has finished
[2025-11-20 23:00:38] 2025-11-20 22:00:06,781 | INFO     | [payload] control thread has finished
[2025-11-20 23:00:38] 2025-11-20 22:00:06,983 | INFO     | [data] copytool_out thread has finished
[2025-11-20 23:00:38] 2025-11-20 22:00:06,989 | INFO     | [job] queue monitor thread has finished
[2025-11-20 23:00:38] 2025-11-20 22:00:06,993 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-20 23:00:38] 2025-11-20 22:00:07,233 | INFO     | [data] copytool_in thread has finished
[2025-11-20 23:00:38] 2025-11-20 22:00:07,474 | INFO     | [payload] validate_pre thread has finished
[2025-11-20 23:00:38] 2025-11-20 22:00:09,668 | INFO     | [data] queue_monitor thread has finished
[2025-11-20 23:00:38] 2025-11-20 22:00:20,563 | INFO     | [monitor] cgroup control has ended
[2025-11-20 23:00:38] 2025-11-20 22:00:21,925 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139940511524672)>', '<ExcThread(monitor, started 139940058867456)>']
[2025-11-20 23:00:38] 2025-11-20 22:00:26,951 | INFO     | all workflow threads have been joined
[2025-11-20 23:00:38] 2025-11-20 22:00:26,952 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-20 23:00:38] 2025-11-20 22:00:26,952 | INFO     | traces error code: 0
[2025-11-20 23:00:38] 2025-11-20 22:00:26,952 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-20 23:00:38] 2025-11-20 22:00:34,674 | INFO     | PID=23695 has CPU usage=2.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-20 23:00:38] 2025-11-20 22:00:34,675 | INFO     | .. there are 9 such processes running
[2025-11-20 23:00:38] 2025-11-20 22:00:34,676 | INFO     | found 0 job(s) in 20 queues
[2025-11-20 23:00:38] 2025-11-20 22:00:34,676 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-20 23:00:38] 2025-11-20 22:00:34,676 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-20 23:00:38] 2025-11-20 22:00:34,677 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-20 23:00:38] 2025-11-20 22:00:34,677 | INFO     | [monitor] control thread has ended
[2025-11-20 23:00:38] 2025-11-20 22:00:35,064 [wrapper] ==== pilot stdout END ====
[2025-11-20 23:00:38] 2025-11-20 22:00:35,164 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-20 23:00:38] 2025-11-20 22:00:35,273 [wrapper] pilotpid: 23695
[2025-11-20 23:00:38] 2025-11-20 22:00:35,374 [wrapper] Pilot exit status: 0
[2025-11-20 23:00:38] 2025-11-20 22:00:35,841 [wrapper] pandaids: 6891561591
[2025-11-20 23:00:38] 2025-11-20 22:00:36,546 [wrapper] cleanup supervisor_pilot  1576 23696
[2025-11-20 23:00:38] 2025-11-20 22:00:36,576 [wrapper] Test setup, not cleaning
[2025-11-20 23:00:38] 2025-11-20 22:00:36,608 [wrapper] apfmon messages muted
[2025-11-20 23:00:38] 2025-11-20 22:00:36,637 [wrapper] ==== wrapper stdout END ====
[2025-11-20 23:00:38] 2025-11-20 22:00:36,672 [wrapper] ==== wrapper stderr END ====
[2025-11-20 23:00:38]  *** Error codes and diagnostics ***
[2025-11-20 23:00:38]     "exeErrorCode": 0,
[2025-11-20 23:00:38]     "exeErrorDiag": "",
[2025-11-20 23:00:38]     "pilotErrorCode": 0,
[2025-11-20 23:00:38]     "pilotErrorDiag": "",
[2025-11-20 23:00:38]  *** Listing of results directory ***
[2025-11-20 23:00:38] total 1333872
[2025-11-20 23:00:38] -rw-r--r--. 1 boinc boinc    576529 Nov 18 16:15 pilot3.tar.gz
[2025-11-20 23:00:38] -rwx------. 1 boinc boinc     36292 Nov 18 16:27 runpilot2-wrapper.sh
[2025-11-20 23:00:38] -rw-r--r--. 1 boinc boinc      5112 Nov 18 16:27 queuedata.json
[2025-11-20 23:00:38] -rw-r--r--. 1 boinc boinc       100 Nov 19 21:09 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-20 23:00:38] -rwxr-xr-x. 1 boinc boinc      7986 Nov 19 21:09 run_atlas
[2025-11-20 23:00:38] -rw-r--r--. 1 boinc boinc       105 Nov 19 21:09 job.xml
[2025-11-20 23:00:38] -rw-r--r--. 2 boinc boinc 410743547 Nov 19 21:09 EVNT.47493065._000087.pool.root.1
[2025-11-20 23:00:38] -rw-r--r--. 1 boinc boinc      6392 Nov 19 21:09 init_data.xml
[2025-11-20 23:00:38] -rw-r--r--. 2 boinc boinc     15120 Nov 19 21:09 start_atlas.sh
[2025-11-20 23:00:38] drwxrwx--x. 2 boinc boinc        68 Nov 19 21:09 shared
[2025-11-20 23:00:38] -rw-r--r--. 2 boinc boinc    590096 Nov 19 21:09 input.tar.gz
[2025-11-20 23:00:38] -rw-r--r--. 1 boinc boinc         0 Nov 19 21:09 boinc_lockfile
[2025-11-20 23:00:38] -rw-r--r--. 1 boinc boinc      2771 Nov 19 21:10 pandaJob.out
[2025-11-20 23:00:38] -rw-------. 1 boinc boinc    989451 Nov 19 21:14 agis_schedconf.cvmfs.json
[2025-11-20 23:00:38] drwx------. 5 boinc boinc      4096 Nov 19 21:14 pilot3
[2025-11-20 23:00:38] -rw-r--r--. 1 boinc boinc       533 Nov 20 22:28 boinc_task_state.xml
[2025-11-20 23:00:38] -rw-------. 1 boinc boinc 921354216 Nov 20 22:56 HITS.47493068._000862.pool.root.1
[2025-11-20 23:00:38] -rw-------. 1 boinc boinc      1032 Nov 20 22:58 memory_monitor_summary.json
[2025-11-20 23:00:38] -rw-------. 1 boinc boinc   1526164 Nov 20 22:58 agis_ddmendpoints.agis.ALL.json
[2025-11-20 23:00:38] -rw-------. 1 boinc boinc   2572509 Nov 20 22:58 log.47493068._000862.job.log.tgz.1
[2025-11-20 23:00:38] -rw-------. 1 boinc boinc      7944 Nov 20 23:00 heartbeat.json
[2025-11-20 23:00:38] -rw-r--r--. 1 boinc boinc      8192 Nov 20 23:00 boinc_mmap_file
[2025-11-20 23:00:38] -rw-r--r--. 1 boinc boinc        29 Nov 20 23:00 wrapper_checkpoint.txt
[2025-11-20 23:00:38] -rw-------. 1 boinc boinc        95 Nov 20 23:00 pilot_heartbeat.json
[2025-11-20 23:00:38] -rw-------. 1 boinc boinc       820 Nov 20 23:00 pilotlog.txt
[2025-11-20 23:00:38] -rw-------. 1 boinc boinc  12373645 Nov 20 23:00 log.47493068._000862.job.log.1
[2025-11-20 23:00:38] -rw-------. 1 boinc boinc       353 Nov 20 23:00 output.list
[2025-11-20 23:00:38] -rw-r--r--. 1 boinc boinc       620 Nov 20 23:00 runtime_log
[2025-11-20 23:00:38] -rw-------. 1 boinc boinc  14960640 Nov 20 23:00 result.tar.gz
[2025-11-20 23:00:38] -rw-r--r--. 1 boinc boinc      8717 Nov 20 23:00 runtime_log.err
[2025-11-20 23:00:38] -rw-------. 1 boinc boinc       662 Nov 20 23:00 I7rMDmRncf8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmxOFKDmqYFuqn.diag
[2025-11-20 23:00:38] -rw-r--r--. 1 boinc boinc     21508 Nov 20 23:00 stderr.txt
[2025-11-20 23:00:38] HITS file was successfully produced:
[2025-11-20 23:00:38] -rw-------. 1 boinc boinc 921354216 Nov 20 22:56 shared/HITS.pool.root.1
[2025-11-20 23:00:38]  *** Contents of shared directory: ***
[2025-11-20 23:00:38] total 1316088
[2025-11-20 23:00:38] -rw-r--r--. 2 boinc boinc 410743547 Nov 19 21:09 ATLAS.root_0
[2025-11-20 23:00:38] -rw-r--r--. 2 boinc boinc     15120 Nov 19 21:09 start_atlas.sh
[2025-11-20 23:00:38] -rw-r--r--. 2 boinc boinc    590096 Nov 19 21:09 input.tar.gz
[2025-11-20 23:00:38] -rw-------. 1 boinc boinc 921354216 Nov 20 22:56 HITS.pool.root.1
[2025-11-20 23:00:38] -rw-------. 1 boinc boinc  14960640 Nov 20 23:00 result.tar.gz
23:00:40 (19902): run_atlas exited; CPU time 339913.949876
23:00:40 (19902): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN