Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
20:44:20 (12038): wrapper (7.7.26015): starting
20:44:20 (12038): wrapper: running run_atlas (--nthreads 8)
[2025-11-19 20:44:20] Arguments: --nthreads 8
[2025-11-19 20:44:20] Threads: 8
[2025-11-19 20:44:20] Checking for CVMFS
[2025-11-19 20:44:20] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-19 20:44:21] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-19 20:44:21] Running cvmfs_config stat atlas.cern.ch
[2025-11-19 20:44:21] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-19 20:44:21] 2.11.2.0 13026 275690 139840 153055 3 180 18770989 25165824 4053 130560 2 134907174 99.883 75354551 3414 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-19 20:44:21] CVMFS is ok
[2025-11-19 20:44:21] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-19 20:44:21] Checking for apptainer binary...
[2025-11-19 20:44:21] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-19 20:44:21] Running /usr/bin/apptainer --version
[2025-11-19 20:44:21] apptainer version 1.3.2-1.el7
[2025-11-19 20:44:21] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-19 20:44:22] cg-vwn329.simple-grid.lan
[2025-11-19 20:44:22] apptainer works
[2025-11-19 20:44:22] Set ATHENA_PROC_NUMBER=8
[2025-11-19 20:44:22] Set ATHENA_CORE_NUMBER=8
[2025-11-19 20:44:22] Starting ATLAS job with PandaID=6891572010
[2025-11-19 20:44:22] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-20 22:42:41]  *** The last 200 lines of the pilot log: ***
[2025-11-20 22:42:41] 2025-11-20 21:41:39,626 | INFO     | sum of square deviations: 1108410558165.7559
[2025-11-20 22:42:41] 2025-11-20 21:41:39,640 | INFO     | monitor loop #6232: job 0:6891572010 is in state 'finished'
[2025-11-20 22:42:41] 2025-11-20 21:41:39,640 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-20 22:42:41] 2025-11-20 21:41:39,706 | INFO     | sum of deviations: 4137418770822.1147
[2025-11-20 22:42:41] 2025-11-20 21:41:39,706 | INFO     | mean x: 1763628176.1883583
[2025-11-20 22:42:41] 2025-11-20 21:41:39,706 | INFO     | mean y: 2883867.8606932634
[2025-11-20 22:42:41] 2025-11-20 21:41:39,706 | INFO     | intersect: -6580298029.096016
[2025-11-20 22:42:41] 2025-11-20 21:41:39,708 | INFO     | chi2: 8.523511157329995
[2025-11-20 22:42:41] 2025-11-20 21:41:39,711 | INFO     | sum of square deviations: 1097572750988.6686
[2025-11-20 22:42:41] 2025-11-20 21:41:39,776 | INFO     | sum of deviations: 4644619469910.968
[2025-11-20 22:42:41] 2025-11-20 21:41:39,776 | INFO     | mean x: 1763628023.6922572
[2025-11-20 22:42:41] 2025-11-20 21:41:39,777 | INFO     | mean y: 2891003.590551181
[2025-11-20 22:42:41] 2025-11-20 21:41:39,777 | INFO     | intersect: -7460287222.311148
[2025-11-20 22:42:41] 2025-11-20 21:41:39,779 | INFO     | chi2: 5.467246514998967
[2025-11-20 22:42:41] 2025-11-20 21:41:39,779 | INFO     | current chi2=5.467246514998967 (change=35.856873838931044 %)
[2025-11-20 22:42:41] 2025-11-20 21:41:39,781 | INFO     | sum of square deviations: 1086805828861.5364
[2025-11-20 22:42:41] 2025-11-20 21:41:39,861 | INFO     | sum of deviations: 5002792454230.722
[2025-11-20 22:42:41] 2025-11-20 21:41:39,862 | INFO     | mean x: 1763627871.1961818
[2025-11-20 22:42:41] 2025-11-20 21:41:39,862 | INFO     | mean y: 2896071.675444371
[2025-11-20 22:42:41] 2025-11-20 21:41:39,862 | INFO     | intersect: -8115448504.497549
[2025-11-20 22:42:41] 2025-11-20 21:41:39,864 | INFO     | chi2: 3.471446696418775
[2025-11-20 22:42:41] 2025-11-20 21:41:39,864 | INFO     | current chi2=3.471446696418775 (change=36.50466122397938 %)
[2025-11-20 22:42:41] 2025-11-20 21:41:39,866 | INFO     | sum of square deviations: 1076109188835.4513
[2025-11-20 22:42:41] 2025-11-20 21:41:39,947 | INFO     | sum of deviations: 5011604706953.185
[2025-11-20 22:42:41] 2025-11-20 21:41:39,952 | INFO     | mean x: 1763627718.69749
[2025-11-20 22:42:41] 2025-11-20 21:41:39,952 | INFO     | mean y: 2896196.0462351386
[2025-11-20 22:42:41] 2025-11-20 21:41:39,953 | INFO     | intersect: -8210587219.98374
[2025-11-20 22:42:41] 2025-11-20 21:41:39,955 | INFO     | chi2: 3.412242067871243
[2025-11-20 22:42:41] 2025-11-20 21:41:39,955 | INFO     | current chi2=3.412242067871243 (change=1.7054742222776724 %)
[2025-11-20 22:42:41] 2025-11-20 21:41:39,955 | INFO     | right removable region: 1513
[2025-11-20 22:42:41] 2025-11-20 21:41:39,961 | INFO     | sum of square deviations: 1097571642618.6688
[2025-11-20 22:42:41] 2025-11-20 21:41:40,022 | INFO     | sum of deviations: 3636692332370.284
[2025-11-20 22:42:41] 2025-11-20 21:41:40,022 | INFO     | mean x: 1763628328.6922572
[2025-11-20 22:42:41] 2025-11-20 21:41:40,022 | INFO     | mean y: 2890910.693569554
[2025-11-20 22:42:41] 2025-11-20 21:41:40,023 | INFO     | intersect: -5840712705.744341
[2025-11-20 22:42:41] 2025-11-20 21:41:40,024 | INFO     | chi2: 5.768074766828174
[2025-11-20 22:42:41] 2025-11-20 21:41:40,025 | INFO     | current chi2=5.768074766828174 (change=32.32748030290567 %)
[2025-11-20 22:42:41] 2025-11-20 21:41:40,027 | INFO     | sum of square deviations: 1086804076580.4807
[2025-11-20 22:42:41] 2025-11-20 21:41:40,091 | INFO     | sum of deviations: 3475905562252.707
[2025-11-20 22:42:41] 2025-11-20 21:41:40,091 | INFO     | mean x: 1763628481.1928902
[2025-11-20 22:42:41] 2025-11-20 21:41:40,091 | INFO     | mean y: 2893186.103357472
[2025-11-20 22:42:41] 2025-11-20 21:41:40,092 | INFO     | intersect: -5637687466.495715
[2025-11-20 22:42:41] 2025-11-20 21:41:40,094 | INFO     | chi2: 5.48497273934178
[2025-11-20 22:42:41] 2025-11-20 21:41:40,094 | INFO     | current chi2=5.48497273934178 (change=4.908085261212207 %)
[2025-11-20 22:42:41] 2025-11-20 21:41:40,094 | INFO     | left removable region: 20
[2025-11-20 22:42:41] 2025-11-20 21:41:40,096 | INFO     | sum of square deviations: 1031948175536.9105
[2025-11-20 22:42:41] 2025-11-20 21:41:40,158 | INFO     | sum of deviations: 4174554171712.1123
[2025-11-20 22:42:41] 2025-11-20 21:41:40,158 | INFO     | mean x: 1763628298.2022772
[2025-11-20 22:42:41] 2025-11-20 21:41:40,159 | INFO     | mean y: 2908088.1419959813
[2025-11-20 22:42:41] 2025-11-20 21:41:40,159 | INFO     | intersect: -7131521764.189783
[2025-11-20 22:42:41] 2025-11-20 21:41:40,161 | INFO     | chi2: 0.2995291233503831
[2025-11-20 22:42:41] 2025-11-20 21:41:40,161 | INFO     | current memory leak: 4.05 B/s (using 1493 data points, chi2=0.30)
[2025-11-20 22:42:41] 2025-11-20 21:41:40,163 | INFO     | could have reported an average CPU frequency of 1999 MHz (51 samples)
[2025-11-20 22:42:41] 2025-11-20 21:41:40,164 | INFO     | ..............................
[2025-11-20 22:42:41] 2025-11-20 21:41:40,164 | INFO     | . Timing measurements:
[2025-11-20 22:42:41] 2025-11-20 21:41:40,164 | INFO     | . get job = 0 s
[2025-11-20 22:42:41] 2025-11-20 21:41:40,164 | INFO     | . initial setup = 2 s
[2025-11-20 22:42:41] 2025-11-20 21:41:40,164 | INFO     | . payload setup = 13 s
[2025-11-20 22:42:41] 2025-11-20 21:41:40,164 | INFO     | . stage-in = 0 s
[2025-11-20 22:42:41] 2025-11-20 21:41:40,164 | INFO     | . payload execution = 93245 s
[2025-11-20 22:42:41] 2025-11-20 21:41:40,164 | INFO     | . stage-out = 5 s
[2025-11-20 22:42:41] 2025-11-20 21:41:40,165 | INFO     | . log creation = 2 s
[2025-11-20 22:42:41] 2025-11-20 21:41:40,165 | INFO     | ..............................
[2025-11-20 22:42:41] 2025-11-20 21:41:40,308 | INFO     | 
[2025-11-20 22:42:41] 2025-11-20 21:41:40,308 | INFO     | job summary report
[2025-11-20 22:42:41] 2025-11-20 21:41:40,308 | INFO     | --------------------------------------------------
[2025-11-20 22:42:41] 2025-11-20 21:41:40,308 | INFO     | PanDA job id: 6891572010
[2025-11-20 22:42:41] 2025-11-20 21:41:40,308 | INFO     | task id: 47493068
[2025-11-20 22:42:41] 2025-11-20 21:41:40,308 | INFO     | errors: (none)
[2025-11-20 22:42:41] 2025-11-20 21:41:40,308 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-20 22:42:41] 2025-11-20 21:41:40,309 | INFO     | pilot state: finished 
[2025-11-20 22:42:41] 2025-11-20 21:41:40,309 | INFO     | transexitcode: 0
[2025-11-20 22:42:41] 2025-11-20 21:41:40,309 | INFO     | exeerrorcode: 0
[2025-11-20 22:42:41] 2025-11-20 21:41:40,309 | INFO     | exeerrordiag: 
[2025-11-20 22:42:41] 2025-11-20 21:41:40,309 | INFO     | exitcode: 0
[2025-11-20 22:42:41] 2025-11-20 21:41:40,309 | INFO     | exitmsg: OK
[2025-11-20 22:42:41] 2025-11-20 21:41:40,309 | INFO     | cpuconsumptiontime: 348418 s
[2025-11-20 22:42:41] 2025-11-20 21:41:40,309 | INFO     | nevents: 1000
[2025-11-20 22:42:41] 2025-11-20 21:41:40,309 | INFO     | neventsw: 0
[2025-11-20 22:42:41] 2025-11-20 21:41:40,309 | INFO     | pid: 28927
[2025-11-20 22:42:41] 2025-11-20 21:41:40,309 | INFO     | pgrp: 28927
[2025-11-20 22:42:41] 2025-11-20 21:41:40,309 | INFO     | corecount: 8
[2025-11-20 22:42:41] 2025-11-20 21:41:40,310 | INFO     | event service: False
[2025-11-20 22:42:41] 2025-11-20 21:41:40,310 | INFO     | sizes: {0: 2296978, 1: 2297177, 12: 2297177, 13: 2297467, 22: 2297523, 93263: 2362364, 93270: 2372982, 93271: 2373038, 93371: 2373284}
[2025-11-20 22:42:41] 2025-11-20 21:41:40,310 | INFO     | --------------------------------------------------
[2025-11-20 22:42:41] 2025-11-20 21:41:40,310 | INFO     | 
[2025-11-20 22:42:41] 2025-11-20 21:41:40,310 | INFO     | executing command: ls -lF /var/lib/boinc/slots/5
[2025-11-20 22:42:41] 2025-11-20 21:41:40,777 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-20 22:42:41] 2025-11-20 21:41:40,778 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-20 22:42:41] 2025-11-20 21:41:40,778 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-20 22:42:41] 2025-11-20 21:41:40,778 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-20 22:42:41] 2025-11-20 21:41:40,778 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-20 22:42:41] 2025-11-20 21:41:40,778 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-20 22:42:41] 2025-11-20 21:41:40,778 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-20 22:42:41] 2025-11-20 21:41:40,778 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-20 22:42:41] 2025-11-20 21:41:40,778 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-20 22:42:41] 2025-11-20 21:41:40,778 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-20 22:42:41] 2025-11-20 21:41:40,778 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-20 22:42:41] 2025-11-20 21:41:40,779 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-20 22:42:41] 2025-11-20 21:41:40,779 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-20 22:42:41] 2025-11-20 21:41:40,779 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-20 22:42:41] 2025-11-20 21:41:40,779 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-20 22:42:41] 2025-11-20 21:41:40,779 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-20 22:42:41] 2025-11-20 21:41:40,779 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-20 22:42:41] 2025-11-20 21:41:40,779 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-20 22:42:41] 2025-11-20 21:41:40,779 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-20 22:42:41] 2025-11-20 21:41:40,779 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-20 22:42:41] 2025-11-20 21:41:40,779 | INFO     | job 6891572010 has completed (purged errors)
[2025-11-20 22:42:41] 2025-11-20 21:41:40,780 | INFO     | overall cleanup function is called
[2025-11-20 22:42:41] 2025-11-20 21:41:41,803 | INFO     | --- collectZombieJob: --- 10, [28927]
[2025-11-20 22:42:41] 2025-11-20 21:41:41,803 | INFO     | zombie collector waiting for pid 28927
[2025-11-20 22:42:41] 2025-11-20 21:41:41,803 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-20 22:42:41] 2025-11-20 21:41:41,803 | INFO     | collected zombie processes
[2025-11-20 22:42:41] 2025-11-20 21:41:41,803 | INFO     | will attempt to kill all subprocesses of pid=28927
[2025-11-20 22:42:41] 2025-11-20 21:41:41,922 | INFO     | process IDs to be killed: [28927] (in reverse order)
[2025-11-20 22:42:41] 2025-11-20 21:41:42,880 | WARNING  | found no corresponding commands to process id(s)
[2025-11-20 22:42:41] 2025-11-20 21:41:42,881 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-20 22:42:41] 2025-11-20 21:41:42,884 | INFO     | did not find any defunct processes belonging to 28927
[2025-11-20 22:42:41] 2025-11-20 21:41:42,888 | INFO     | did not find any defunct processes belonging to 28927
[2025-11-20 22:42:41] 2025-11-20 21:41:42,954 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-20 22:42:41] 2025-11-20 21:41:42,954 | INFO     | ready for new job
[2025-11-20 22:42:41] 2025-11-20 21:41:42,955 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-20 22:42:41] 2025-11-20 21:41:42,962 | INFO     | ***************************************
[2025-11-20 22:42:41] 2025-11-20 21:41:42,962 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-20 22:42:41] 2025-11-20 21:41:42,962 | INFO     | ***************************************
[2025-11-20 22:42:41] 2025-11-20 21:41:42,962 | INFO     | 
[2025-11-20 22:42:41] 2025-11-20 21:41:42,963 | INFO     | pilot is running in a VM
[2025-11-20 22:42:41] 2025-11-20 21:41:42,963 | INFO     | architecture information:
[2025-11-20 22:42:41] 2025-11-20 21:41:42,974 | INFO     | executing command: cat /etc/os-release
[2025-11-20 22:42:41] 2025-11-20 21:41:43,230 | INFO     | cat /etc/os-release:
[2025-11-20 22:42:41] NAME="CentOS Linux"
[2025-11-20 22:42:41] VERSION="7 (Core)"
[2025-11-20 22:42:41] ID="centos"
[2025-11-20 22:42:41] ID_LIKE="rhel fedora"
[2025-11-20 22:42:41] VERSION_ID="7"
[2025-11-20 22:42:41] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-20 22:42:41] ANSI_COLOR="0;31"
[2025-11-20 22:42:41] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-20 22:42:41] HOME_URL="https://www.centos.org/"
[2025-11-20 22:42:41] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-20 22:42:41] 
[2025-11-20 22:42:41] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-20 22:42:41] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-20 22:42:41] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-20 22:42:41] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-20 22:42:41] 
[2025-11-20 22:42:41] 2025-11-20 21:41:43,231 | INFO     | ***************************************
[2025-11-20 22:42:41] 2025-11-20 21:41:43,735 | INFO     | executing command: df -mP /var/lib/boinc/slots/5
[2025-11-20 22:42:41] 2025-11-20 21:41:43,961 | INFO     | sufficient remaining disk space (494290337792 B)
[2025-11-20 22:42:41] 2025-11-20 21:41:43,962 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-20 22:42:41] 2025-11-20 21:41:43,962 | INFO     | current server update state: UPDATING_FINAL
[2025-11-20 22:42:41] 2025-11-20 21:41:43,962 | INFO     | update_server=False
[2025-11-20 22:42:41] 2025-11-20 21:41:43,962 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-20 22:42:41] 2025-11-20 21:41:43,964 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-20 22:42:41] 2025-11-20 21:41:43,964 | INFO     | aborting loop
[2025-11-20 22:42:41] 2025-11-20 21:41:43,964 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-20 22:42:41] 2025-11-20 21:41:44,554 | INFO     | all data control threads have been joined
[2025-11-20 22:42:41] 2025-11-20 21:41:44,666 | INFO     | all payload control threads have been joined
[2025-11-20 22:42:41] 2025-11-20 21:41:44,969 | INFO     | [job] retrieve thread has finished
[2025-11-20 22:42:41] 2025-11-20 21:41:44,970 | INFO     | [job] job monitor thread has finished
[2025-11-20 22:42:41] 2025-11-20 21:41:45,251 | INFO     | [data] copytool_in thread has finished
[2025-11-20 22:42:41] 2025-11-20 21:41:45,318 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-20 22:42:41] 2025-11-20 21:41:45,344 | INFO     | all job control threads have been joined
[2025-11-20 22:42:41] 2025-11-20 21:41:45,560 | INFO     | [data] control thread has finished
[2025-11-20 22:42:41] 2025-11-20 21:41:45,672 | INFO     | [payload] control thread has finished
[2025-11-20 22:42:41] 2025-11-20 21:41:45,827 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-20 22:42:41] 2025-11-20 21:41:45,842 | INFO     | [job] create_data_payload thread has finished
[2025-11-20 22:42:41] 2025-11-20 21:41:45,866 | INFO     | [payload] failed_post thread has finished
[2025-11-20 22:42:41] 2025-11-20 21:41:45,946 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-20 22:42:41] 2025-11-20 21:41:45,970 | INFO     | [payload] validate_post thread has finished
[2025-11-20 22:42:41] 2025-11-20 21:41:45,972 | INFO     | [data] copytool_out thread has finished
[2025-11-20 22:42:41] 2025-11-20 21:41:46,008 | INFO     | [payload] execute_payloads thread has finished
[2025-11-20 22:42:41] 2025-11-20 21:41:46,317 | INFO     | [payload] validate_pre thread has finished
[2025-11-20 22:42:41] 2025-11-20 21:41:46,317 | INFO     | [job] validate thread has finished
[2025-11-20 22:42:41] 2025-11-20 21:41:46,324 | INFO     | [job] queue monitor thread has finished
[2025-11-20 22:42:41] 2025-11-20 21:41:46,350 | INFO     | [job] control thread has finished
[2025-11-20 22:42:41] 2025-11-20 21:41:49,836 | INFO     | [data] queue_monitor thread has finished
[2025-11-20 22:42:41] 2025-11-20 21:42:12,262 | INFO     | PID=16550 has CPU usage=2.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-20 22:42:41] 2025-11-20 21:42:12,263 | INFO     | .. there are 9 such processes running
[2025-11-20 22:42:41] 2025-11-20 21:42:12,263 | INFO     | found 0 job(s) in 20 queues
[2025-11-20 22:42:41] 2025-11-20 21:42:12,263 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-20 22:42:41] 2025-11-20 21:42:12,263 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-20 22:42:41] 2025-11-20 21:42:29,629 | INFO     | [monitor] cgroup control has ended
[2025-11-20 22:42:41] 2025-11-20 21:42:31,192 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140657562056512)>', '<ExcThread(monitor, started 140657125472000)>']
[2025-11-20 22:42:41] 2025-11-20 21:42:31,375 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-20 22:42:41] 2025-11-20 21:42:31,375 | INFO     | [monitor] control thread has ended
[2025-11-20 22:42:41] 2025-11-20 21:42:36,218 | INFO     | all workflow threads have been joined
[2025-11-20 22:42:41] 2025-11-20 21:42:36,218 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-20 22:42:41] 2025-11-20 21:42:36,218 | INFO     | traces error code: 0
[2025-11-20 22:42:41] 2025-11-20 21:42:36,218 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-20 22:42:41] 2025-11-20 21:42:36,670 [wrapper] ==== pilot stdout END ====
[2025-11-20 22:42:41] 2025-11-20 21:42:36,799 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-20 22:42:41] 2025-11-20 21:42:36,854 [wrapper] pilotpid: 16550
[2025-11-20 22:42:41] 2025-11-20 21:42:36,879 [wrapper] Pilot exit status: 0
[2025-11-20 22:42:41] 2025-11-20 21:42:37,214 [wrapper] pandaids: 6891572010
[2025-11-20 22:42:41] 2025-11-20 21:42:38,129 [wrapper] cleanup supervisor_pilot 19354 16551
[2025-11-20 22:42:41] 2025-11-20 21:42:38,171 [wrapper] Test setup, not cleaning
[2025-11-20 22:42:41] 2025-11-20 21:42:38,201 [wrapper] apfmon messages muted
[2025-11-20 22:42:41] 2025-11-20 21:42:38,242 [wrapper] ==== wrapper stdout END ====
[2025-11-20 22:42:41] 2025-11-20 21:42:38,326 [wrapper] ==== wrapper stderr END ====
[2025-11-20 22:42:41]  *** Error codes and diagnostics ***
[2025-11-20 22:42:41]     "exeErrorCode": 0,
[2025-11-20 22:42:41]     "exeErrorDiag": "",
[2025-11-20 22:42:41]     "pilotErrorCode": 0,
[2025-11-20 22:42:41]     "pilotErrorDiag": "",
[2025-11-20 22:42:41]  *** Listing of results directory ***
[2025-11-20 22:42:41] total 1347700
[2025-11-20 22:42:41] -rw-r--r--. 1 boinc boinc    576529 Nov 18 16:47 pilot3.tar.gz
[2025-11-20 22:42:41] -rw-r--r--. 1 boinc boinc      5112 Nov 18 17:11 queuedata.json
[2025-11-20 22:42:41] -rwx------. 1 boinc boinc     36292 Nov 18 17:12 runpilot2-wrapper.sh
[2025-11-20 22:42:41] -rw-r--r--. 1 boinc boinc       100 Nov 19 20:44 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-20 22:42:41] -rwxr-xr-x. 1 boinc boinc      7986 Nov 19 20:44 run_atlas
[2025-11-20 22:42:41] -rw-r--r--. 1 boinc boinc       105 Nov 19 20:44 job.xml
[2025-11-20 22:42:41] -rw-r--r--. 2 boinc boinc 410889463 Nov 19 20:44 EVNT.47493065._000320.pool.root.1
[2025-11-20 22:42:41] -rw-r--r--. 1 boinc boinc      6390 Nov 19 20:44 init_data.xml
[2025-11-20 22:42:41] -rw-r--r--. 2 boinc boinc     15120 Nov 19 20:44 start_atlas.sh
[2025-11-20 22:42:41] drwxrwx--x. 2 boinc boinc        68 Nov 19 20:44 shared
[2025-11-20 22:42:41] -rw-r--r--. 2 boinc boinc    590099 Nov 19 20:44 input.tar.gz
[2025-11-20 22:42:41] -rw-r--r--. 1 boinc boinc         0 Nov 19 20:44 boinc_lockfile
[2025-11-20 22:42:41] -rw-r--r--. 1 boinc boinc      2772 Nov 19 20:44 pandaJob.out
[2025-11-20 22:42:41] -rw-------. 1 boinc boinc    989451 Nov 19 20:44 agis_schedconf.cvmfs.json
[2025-11-20 22:42:41] drwx------. 5 boinc boinc      4096 Nov 19 20:44 pilot3
[2025-11-20 22:42:41] -rw-r--r--. 1 boinc boinc       533 Nov 20 22:27 boinc_task_state.xml
[2025-11-20 22:42:41] -rw-------. 1 boinc boinc 935243288 Nov 20 22:38 HITS.47493068._003195.pool.root.1
[2025-11-20 22:42:41] -rw-------. 1 boinc boinc      1031 Nov 20 22:39 memory_monitor_summary.json
[2025-11-20 22:42:41] -rw-------. 1 boinc boinc   1526164 Nov 20 22:39 agis_ddmendpoints.agis.ALL.json
[2025-11-20 22:42:41] -rw-------. 1 boinc boinc   2580640 Nov 20 22:39 log.47493068._003195.job.log.tgz.1
[2025-11-20 22:42:41] -rw-------. 1 boinc boinc        95 Nov 20 22:41 pilot_heartbeat.json
[2025-11-20 22:42:41] -rw-------. 1 boinc boinc      8628 Nov 20 22:41 heartbeat.json
[2025-11-20 22:42:41] -rw-r--r--. 1 boinc boinc        29 Nov 20 22:42 wrapper_checkpoint.txt
[2025-11-20 22:42:41] -rw-r--r--. 1 boinc boinc      8192 Nov 20 22:42 boinc_mmap_file
[2025-11-20 22:42:41] -rw-------. 1 boinc boinc      4884 Nov 20 22:42 pilotlog.txt
[2025-11-20 22:42:41] -rw-------. 1 boinc boinc  12419394 Nov 20 22:42 log.47493068._003195.job.log.1
[2025-11-20 22:42:41] -rw-------. 1 boinc boinc       353 Nov 20 22:42 output.list
[2025-11-20 22:42:41] -rw-r--r--. 1 boinc boinc       620 Nov 20 22:42 runtime_log
[2025-11-20 22:42:41] -rw-------. 1 boinc boinc  15022080 Nov 20 22:42 result.tar.gz
[2025-11-20 22:42:41] -rw-r--r--. 1 boinc boinc      8703 Nov 20 22:42 runtime_log.err
[2025-11-20 22:42:41] -rw-------. 1 boinc boinc       662 Nov 20 22:42 GHnKDmeUdf8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmdkFKDmWPsLOn.diag
[2025-11-20 22:42:41] -rw-r--r--. 1 boinc boinc     20867 Nov 20 22:42 stderr.txt
[2025-11-20 22:42:41] HITS file was successfully produced:
[2025-11-20 22:42:41] -rw-------. 1 boinc boinc 935243288 Nov 20 22:38 shared/HITS.pool.root.1
[2025-11-20 22:42:41]  *** Contents of shared directory: ***
[2025-11-20 22:42:41] total 1329852
[2025-11-20 22:42:41] -rw-r--r--. 2 boinc boinc 410889463 Nov 19 20:44 ATLAS.root_0
[2025-11-20 22:42:41] -rw-r--r--. 2 boinc boinc     15120 Nov 19 20:44 start_atlas.sh
[2025-11-20 22:42:41] -rw-r--r--. 2 boinc boinc    590099 Nov 19 20:44 input.tar.gz
[2025-11-20 22:42:41] -rw-------. 1 boinc boinc 935243288 Nov 20 22:38 HITS.pool.root.1
[2025-11-20 22:42:41] -rw-------. 1 boinc boinc  15022080 Nov 20 22:42 result.tar.gz
22:42:43 (12038): run_atlas exited; CPU time 349023.660141
22:42:43 (12038): called boinc_finish(0)

</stderr_txt>
]]>

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