Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
22:42:49 (22166): wrapper (7.7.26015): starting
22:42:49 (22166): wrapper: running run_atlas (--nthreads 8)
[2025-11-20 22:42:49] Arguments: --nthreads 8
[2025-11-20 22:42:49] Threads: 8
[2025-11-20 22:42:49] Checking for CVMFS
[2025-11-20 22:42:50] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-20 22:42:51] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-20 22:42:51] Running cvmfs_config stat atlas.cern.ch
[2025-11-20 22:42:52] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-20 22:42:52] 2.11.2.0 13026 277249 142668 153088 3 294 19410351 25165824 4608 130560 2 135649635 99.884 75549068 3405 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-20 22:42:52] CVMFS is ok
[2025-11-20 22:42:52] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-20 22:42:52] Checking for apptainer binary...
[2025-11-20 22:42:52] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-20 22:42:52] Running /usr/bin/apptainer --version
[2025-11-20 22:42:52] apptainer version 1.3.2-1.el7
[2025-11-20 22:42:52] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-20 22:43:04] cg-vwn329.simple-grid.lan
[2025-11-20 22:43:04] apptainer works
[2025-11-20 22:43:04] Set ATHENA_PROC_NUMBER=8
[2025-11-20 22:43:04] Set ATHENA_CORE_NUMBER=8
[2025-11-20 22:43:04] Starting ATLAS job with PandaID=6891558673
[2025-11-20 22:43:04] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-21 23:56:51]  *** The last 200 lines of the pilot log: ***
[2025-11-21 23:56:51] 2025-11-21 22:55:51,124 | INFO     | time since job start (90530s) is within the limit (172800.0s)
[2025-11-21 23:56:51] 2025-11-21 22:55:53,131 | INFO     | time since job start (90532s) is within the limit (172800.0s)
[2025-11-21 23:56:51] 2025-11-21 22:55:53,152 | INFO     | monitor loop #6096: job 0:6891558673 is in state 'finished'
[2025-11-21 23:56:51] 2025-11-21 22:55:53,152 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-21 23:56:51] 2025-11-21 22:55:55,138 | INFO     | time since job start (90534s) is within the limit (172800.0s)
[2025-11-21 23:56:51] 2025-11-21 22:55:55,657 | INFO     | monitor loop #6097: job 0:6891558673 is in state 'finished'
[2025-11-21 23:56:51] 2025-11-21 22:55:55,657 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-21 23:56:51] 2025-11-21 22:55:57,145 | INFO     | time since job start (90536s) is within the limit (172800.0s)
[2025-11-21 23:56:51] 2025-11-21 22:55:58,161 | INFO     | monitor loop #6098: job 0:6891558673 is in state 'finished'
[2025-11-21 23:56:51] 2025-11-21 22:55:58,161 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-21 23:56:51] 2025-11-21 22:55:59,152 | INFO     | time since job start (90538s) is within the limit (172800.0s)
[2025-11-21 23:56:51] 2025-11-21 22:56:00,375 | INFO     | PID=25949 has CPU usage=1.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-21 23:56:51] 2025-11-21 22:56:00,376 | INFO     | .. there are 9 such processes running
[2025-11-21 23:56:51] 2025-11-21 22:56:00,670 | INFO     | monitor loop #6099: job 0:6891558673 is in state 'finished'
[2025-11-21 23:56:51] 2025-11-21 22:56:00,670 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-21 23:56:51] 2025-11-21 22:56:00,980 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-21 23:56:51] 2025-11-21 22:56:00,981 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-11-21 23:56:51] 2025-11-21 22:56:00,983 | INFO     | using path: /var/lib/boinc/slots/5/PanDA_Pilot-6891558673/memory_monitor_summary.json (trf name=prmon)
[2025-11-21 23:56:51] 2025-11-21 22:56:00,984 | INFO     | extracted standard info from prmon json
[2025-11-21 23:56:51] 2025-11-21 22:56:00,985 | INFO     | extracted standard memory fields from prmon json
[2025-11-21 23:56:51] 2025-11-21 22:56:00,985 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-21 23:56:51] 2025-11-21 22:56:01,015 | INFO     | fitting pss+swap vs Time
[2025-11-21 23:56:51] 2025-11-21 22:56:01,017 | INFO     | sum of square deviations: 999123656483.3724
[2025-11-21 23:56:51] 2025-11-21 22:56:01,082 | INFO     | sum of deviations: 2471532329193.4414
[2025-11-21 23:56:51] 2025-11-21 22:56:01,082 | INFO     | mean x: 1763720629.3676372
[2025-11-21 23:56:51] 2025-11-21 22:56:01,083 | INFO     | mean y: 2859669.971563981
[2025-11-21 23:56:51] 2025-11-21 22:56:01,083 | INFO     | intersect: -4360056298.298338
[2025-11-21 23:56:51] 2025-11-21 22:56:01,084 | INFO     | chi2: 16.267281283011656
[2025-11-21 23:56:51] 2025-11-21 22:56:01,087 | INFO     | sum of square deviations: 989011748083.9891
[2025-11-21 23:56:51] 2025-11-21 22:56:01,147 | INFO     | sum of deviations: 3007183902639.1206
[2025-11-21 23:56:51] 2025-11-21 22:56:01,147 | INFO     | mean x: 1763720476.8722825
[2025-11-21 23:56:51] 2025-11-21 22:56:01,147 | INFO     | mean y: 2867746.154891304
[2025-11-21 23:56:51] 2025-11-21 22:56:01,147 | INFO     | intersect: -5359891429.43673
[2025-11-21 23:56:51] 2025-11-21 22:56:01,149 | INFO     | chi2: 12.451431026246974
[2025-11-21 23:56:51] 2025-11-21 22:56:01,149 | INFO     | current chi2=12.451431026246974 (change=23.45720953844742 %)
[2025-11-21 23:56:51] 2025-11-21 22:56:01,149 | INFO     | right removable region: 1471
[2025-11-21 23:56:51] 2025-11-21 22:56:01,152 | INFO     | sum of square deviations: 989010515883.9897
[2025-11-21 23:56:51] 2025-11-21 22:56:01,220 | INFO     | sum of deviations: 2011931028368.278
[2025-11-21 23:56:51] 2025-11-21 22:56:01,220 | INFO     | mean x: 1763720781.8722825
[2025-11-21 23:56:51] 2025-11-21 22:56:01,220 | INFO     | mean y: 2866596.9748641304
[2025-11-21 23:56:51] 2025-11-21 22:56:01,220 | INFO     | intersect: -3585047292.146048
[2025-11-21 23:56:51] 2025-11-21 22:56:01,222 | INFO     | chi2: 13.669221712148678
[2025-11-21 23:56:51] 2025-11-21 22:56:01,222 | INFO     | current chi2=13.669221712148678 (change=15.971074241989033 %)
[2025-11-21 23:56:51] 2025-11-21 22:56:01,222 | INFO     | left removable region: 10
[2025-11-21 23:56:51] 2025-11-21 22:56:01,224 | INFO     | sum of square deviations: 967004206623.9292
[2025-11-21 23:56:51] 2025-11-21 22:56:01,280 | INFO     | sum of deviations: 2545160578786.4263
[2025-11-21 23:56:51] 2025-11-21 22:56:01,281 | INFO     | mean x: 1763720751.3791924
[2025-11-21 23:56:51] 2025-11-21 22:56:01,281 | INFO     | mean y: 2877750.0930869267
[2025-11-21 23:56:51] 2025-11-21 22:56:01,281 | INFO     | intersect: -4639245311.677277
[2025-11-21 23:56:51] 2025-11-21 22:56:01,283 | INFO     | chi2: 9.140603038713671
[2025-11-21 23:56:51] 2025-11-21 22:56:01,284 | INFO     | current memory leak: 2.63 B/s (using 1461 data points, chi2=9.14)
[2025-11-21 23:56:51] 2025-11-21 22:56:01,286 | INFO     | could have reported an average CPU frequency of 1999 MHz (50 samples)
[2025-11-21 23:56:51] 2025-11-21 22:56:01,287 | INFO     | ..............................
[2025-11-21 23:56:51] 2025-11-21 22:56:01,287 | INFO     | . Timing measurements:
[2025-11-21 23:56:51] 2025-11-21 22:56:01,287 | INFO     | . get job = 0 s
[2025-11-21 23:56:51] 2025-11-21 22:56:01,287 | INFO     | . initial setup = 4 s
[2025-11-21 23:56:51] 2025-11-21 22:56:01,287 | INFO     | . payload setup = 135 s
[2025-11-21 23:56:51] 2025-11-21 22:56:01,287 | INFO     | . stage-in = 0 s
[2025-11-21 23:56:51] 2025-11-21 22:56:01,287 | INFO     | . payload execution = 90079 s
[2025-11-21 23:56:51] 2025-11-21 22:56:01,288 | INFO     | . stage-out = 6 s
[2025-11-21 23:56:51] 2025-11-21 22:56:01,288 | INFO     | . log creation = 1 s
[2025-11-21 23:56:51] 2025-11-21 22:56:01,288 | INFO     | ..............................
[2025-11-21 23:56:51] 2025-11-21 22:56:01,408 | INFO     | time since job start (90540s) is within the limit (172800.0s)
[2025-11-21 23:56:51] 2025-11-21 22:56:01,420 | INFO     | 
[2025-11-21 23:56:51] 2025-11-21 22:56:01,420 | INFO     | job summary report
[2025-11-21 23:56:51] 2025-11-21 22:56:01,421 | INFO     | --------------------------------------------------
[2025-11-21 23:56:51] 2025-11-21 22:56:01,421 | INFO     | PanDA job id: 6891558673
[2025-11-21 23:56:51] 2025-11-21 22:56:01,421 | INFO     | task id: 47493068
[2025-11-21 23:56:51] 2025-11-21 22:56:01,421 | INFO     | errors: (none)
[2025-11-21 23:56:51] 2025-11-21 22:56:01,421 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-21 23:56:51] 2025-11-21 22:56:01,421 | INFO     | pilot state: finished 
[2025-11-21 23:56:51] 2025-11-21 22:56:01,421 | INFO     | transexitcode: 0
[2025-11-21 23:56:51] 2025-11-21 22:56:01,421 | INFO     | exeerrorcode: 0
[2025-11-21 23:56:51] 2025-11-21 22:56:01,421 | INFO     | exeerrordiag: 
[2025-11-21 23:56:51] 2025-11-21 22:56:01,421 | INFO     | exitcode: 0
[2025-11-21 23:56:51] 2025-11-21 22:56:01,421 | INFO     | exitmsg: OK
[2025-11-21 23:56:51] 2025-11-21 22:56:01,421 | INFO     | cpuconsumptiontime: 336604 s
[2025-11-21 23:56:51] 2025-11-21 22:56:01,422 | INFO     | nevents: 1000
[2025-11-21 23:56:51] 2025-11-21 22:56:01,422 | INFO     | neventsw: 0
[2025-11-21 23:56:51] 2025-11-21 22:56:01,422 | INFO     | pid: 32527
[2025-11-21 23:56:51] 2025-11-21 22:56:01,422 | INFO     | pgrp: 32527
[2025-11-21 23:56:51] 2025-11-21 22:56:01,422 | INFO     | corecount: 8
[2025-11-21 23:56:51] 2025-11-21 22:56:01,422 | INFO     | event service: False
[2025-11-21 23:56:51] 2025-11-21 22:56:01,422 | INFO     | sizes: {0: 2298621, 1: 2298820, 12: 2298820, 23: 2298848, 34: 2298876, 44: 2298904, 55: 2299060, 66: 2299088, 77: 2299116, 88: 2299172, 98: 2299200, 105: 2299770, 
[2025-11-21 23:56:51] 2025-11-21 22:56:01,422 | INFO     | --------------------------------------------------
[2025-11-21 23:56:51] 2025-11-21 22:56:01,422 | INFO     | 
[2025-11-21 23:56:51] 2025-11-21 22:56:01,422 | INFO     | executing command: ls -lF /var/lib/boinc/slots/5
[2025-11-21 23:56:51] 2025-11-21 22:56:01,610 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-21 23:56:51] 2025-11-21 22:56:01,611 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-21 23:56:51] 2025-11-21 22:56:01,611 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-21 23:56:51] 2025-11-21 22:56:01,611 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-21 23:56:51] 2025-11-21 22:56:01,611 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-21 23:56:51] 2025-11-21 22:56:01,611 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-21 23:56:51] 2025-11-21 22:56:01,611 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-21 23:56:51] 2025-11-21 22:56:01,611 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-21 23:56:51] 2025-11-21 22:56:01,612 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-21 23:56:51] 2025-11-21 22:56:01,612 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-21 23:56:51] 2025-11-21 22:56:01,612 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-21 23:56:51] 2025-11-21 22:56:01,612 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-21 23:56:51] 2025-11-21 22:56:01,612 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-21 23:56:51] 2025-11-21 22:56:01,612 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-21 23:56:51] 2025-11-21 22:56:01,612 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-21 23:56:51] 2025-11-21 22:56:01,612 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-21 23:56:51] 2025-11-21 22:56:01,613 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-21 23:56:51] 2025-11-21 22:56:01,613 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-21 23:56:51] 2025-11-21 22:56:01,613 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-21 23:56:51] 2025-11-21 22:56:01,613 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-21 23:56:51] 2025-11-21 22:56:01,613 | INFO     | job 6891558673 has completed (purged errors)
[2025-11-21 23:56:51] 2025-11-21 22:56:01,613 | INFO     | overall cleanup function is called
[2025-11-21 23:56:51] 2025-11-21 22:56:02,636 | INFO     | --- collectZombieJob: --- 10, [32527]
[2025-11-21 23:56:51] 2025-11-21 22:56:02,636 | INFO     | zombie collector waiting for pid 32527
[2025-11-21 23:56:51] 2025-11-21 22:56:02,636 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-21 23:56:51] 2025-11-21 22:56:02,636 | INFO     | collected zombie processes
[2025-11-21 23:56:51] 2025-11-21 22:56:02,636 | INFO     | will attempt to kill all subprocesses of pid=32527
[2025-11-21 23:56:51] 2025-11-21 22:56:02,748 | INFO     | process IDs to be killed: [32527] (in reverse order)
[2025-11-21 23:56:51] 2025-11-21 22:56:02,812 | WARNING  | found no corresponding commands to process id(s)
[2025-11-21 23:56:51] 2025-11-21 22:56:02,813 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-21 23:56:51] 2025-11-21 22:56:02,816 | INFO     | did not find any defunct processes belonging to 32527
[2025-11-21 23:56:51] 2025-11-21 22:56:02,820 | INFO     | did not find any defunct processes belonging to 32527
[2025-11-21 23:56:51] 2025-11-21 22:56:02,822 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-21 23:56:51] 2025-11-21 22:56:02,823 | INFO     | ready for new job
[2025-11-21 23:56:51] 2025-11-21 22:56:02,823 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-21 23:56:51] 2025-11-21 22:56:02,829 | INFO     | ***************************************
[2025-11-21 23:56:51] 2025-11-21 22:56:02,830 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-21 23:56:51] 2025-11-21 22:56:02,830 | INFO     | ***************************************
[2025-11-21 23:56:51] 2025-11-21 22:56:02,830 | INFO     | 
[2025-11-21 23:56:51] 2025-11-21 22:56:02,831 | INFO     | pilot is running in a VM
[2025-11-21 23:56:51] 2025-11-21 22:56:02,831 | INFO     | architecture information:
[2025-11-21 23:56:51] 2025-11-21 22:56:02,832 | INFO     | executing command: cat /etc/os-release
[2025-11-21 23:56:51] 2025-11-21 22:56:02,853 | INFO     | cat /etc/os-release:
[2025-11-21 23:56:51] NAME="CentOS Linux"
[2025-11-21 23:56:51] VERSION="7 (Core)"
[2025-11-21 23:56:51] ID="centos"
[2025-11-21 23:56:51] ID_LIKE="rhel fedora"
[2025-11-21 23:56:51] VERSION_ID="7"
[2025-11-21 23:56:51] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-21 23:56:51] ANSI_COLOR="0;31"
[2025-11-21 23:56:51] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-21 23:56:51] HOME_URL="https://www.centos.org/"
[2025-11-21 23:56:51] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-21 23:56:51] 
[2025-11-21 23:56:51] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-21 23:56:51] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-21 23:56:51] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-21 23:56:51] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-21 23:56:51] 
[2025-11-21 23:56:51] 2025-11-21 22:56:02,853 | INFO     | ***************************************
[2025-11-21 23:56:51] 2025-11-21 22:56:03,357 | INFO     | executing command: df -mP /var/lib/boinc/slots/5
[2025-11-21 23:56:51] 2025-11-21 22:56:03,564 | INFO     | sufficient remaining disk space (495040069632 B)
[2025-11-21 23:56:51] 2025-11-21 22:56:03,564 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-21 23:56:51] 2025-11-21 22:56:03,564 | INFO     | current server update state: UPDATING_FINAL
[2025-11-21 23:56:51] 2025-11-21 22:56:03,564 | INFO     | update_server=False
[2025-11-21 23:56:51] 2025-11-21 22:56:03,564 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-21 23:56:51] 2025-11-21 22:56:03,700 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-21 23:56:51] 2025-11-21 22:56:03,818 | INFO     | all payload control threads have been joined
[2025-11-21 23:56:51] 2025-11-21 22:56:03,936 | INFO     | all job control threads have been joined
[2025-11-21 23:56:51] 2025-11-21 22:56:04,201 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-21 23:56:51] 2025-11-21 22:56:04,201 | INFO     | aborting loop
[2025-11-21 23:56:51] 2025-11-21 22:56:04,571 | INFO     | [job] retrieve thread has finished
[2025-11-21 23:56:51] 2025-11-21 22:56:04,672 | INFO     | all data control threads have been joined
[2025-11-21 23:56:51] 2025-11-21 22:56:04,824 | INFO     | [payload] control thread has finished
[2025-11-21 23:56:51] 2025-11-21 22:56:04,941 | INFO     | [job] control thread has finished
[2025-11-21 23:56:51] 2025-11-21 22:56:05,052 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-21 23:56:51] 2025-11-21 22:56:05,207 | INFO     | [job] job monitor thread has finished
[2025-11-21 23:56:51] 2025-11-21 22:56:05,465 | INFO     | [payload] validate_post thread has finished
[2025-11-21 23:56:51] 2025-11-21 22:56:05,565 | INFO     | [payload] execute_payloads thread has finished
[2025-11-21 23:56:51] 2025-11-21 22:56:05,586 | INFO     | [job] create_data_payload thread has finished
[2025-11-21 23:56:51] 2025-11-21 22:56:05,610 | INFO     | [job] validate thread has finished
[2025-11-21 23:56:51] 2025-11-21 22:56:05,678 | INFO     | [data] control thread has finished
[2025-11-21 23:56:51] 2025-11-21 22:56:05,707 | INFO     | [data] copytool_out thread has finished
[2025-11-21 23:56:51] 2025-11-21 22:56:05,925 | INFO     | [payload] validate_pre thread has finished
[2025-11-21 23:56:51] 2025-11-21 22:56:05,946 | INFO     | [payload] failed_post thread has finished
[2025-11-21 23:56:51] 2025-11-21 22:56:05,987 | INFO     | [data] copytool_in thread has finished
[2025-11-21 23:56:51] 2025-11-21 22:56:06,137 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-21 23:56:51] 2025-11-21 22:56:06,438 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-21 23:56:51] 2025-11-21 22:56:07,444 | INFO     | [job] queue monitor thread has finished
[2025-11-21 23:56:51] 2025-11-21 22:56:10,146 | INFO     | [data] queue_monitor thread has finished
[2025-11-21 23:56:51] 2025-11-21 22:56:34,574 | INFO     | PID=25949 has CPU usage=2.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-21 23:56:51] 2025-11-21 22:56:34,574 | INFO     | .. there are 9 such processes running
[2025-11-21 23:56:51] 2025-11-21 22:56:34,576 | INFO     | found 0 job(s) in 20 queues
[2025-11-21 23:56:51] 2025-11-21 22:56:34,576 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-21 23:56:51] 2025-11-21 22:56:34,576 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-21 23:56:51] 2025-11-21 22:56:38,805 | INFO     | [monitor] cgroup control has ended
[2025-11-21 23:56:51] 2025-11-21 22:56:40,824 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140304648378176)>', '<ExcThread(monitor, started 140304191563520)>']
[2025-11-21 23:56:51] 2025-11-21 22:56:41,618 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-21 23:56:51] 2025-11-21 22:56:41,618 | INFO     | [monitor] control thread has ended
[2025-11-21 23:56:51] 2025-11-21 22:56:45,850 | INFO     | all workflow threads have been joined
[2025-11-21 23:56:51] 2025-11-21 22:56:45,850 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-21 23:56:51] 2025-11-21 22:56:45,850 | INFO     | traces error code: 0
[2025-11-21 23:56:51] 2025-11-21 22:56:45,851 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-21 23:56:51] 2025-11-21 22:56:46,255 [wrapper] ==== pilot stdout END ====
[2025-11-21 23:56:51] 2025-11-21 22:56:46,331 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-21 23:56:51] 2025-11-21 22:56:46,371 [wrapper] pilotpid: 25949
[2025-11-21 23:56:51] 2025-11-21 22:56:46,401 [wrapper] Pilot exit status: 0
[2025-11-21 23:56:51] 2025-11-21 22:56:46,856 [wrapper] pandaids: 6891558673
[2025-11-21 23:56:51] 2025-11-21 22:56:48,035 [wrapper] cleanup supervisor_pilot 26528 25950
[2025-11-21 23:56:51] 2025-11-21 22:56:48,095 [wrapper] Test setup, not cleaning
[2025-11-21 23:56:51] 2025-11-21 22:56:48,214 [wrapper] apfmon messages muted
[2025-11-21 23:56:51] 2025-11-21 22:56:48,314 [wrapper] ==== wrapper stdout END ====
[2025-11-21 23:56:51] 2025-11-21 22:56:48,404 [wrapper] ==== wrapper stderr END ====
[2025-11-21 23:56:51]  *** Error codes and diagnostics ***
[2025-11-21 23:56:51]     "exeErrorCode": 0,
[2025-11-21 23:56:51]     "exeErrorDiag": "",
[2025-11-21 23:56:51]     "pilotErrorCode": 0,
[2025-11-21 23:56:51]     "pilotErrorDiag": "",
[2025-11-21 23:56:51]  *** Listing of results directory ***
[2025-11-21 23:56:51] total 1326160
[2025-11-21 23:56:51] -rw-r--r--. 1 boinc boinc    576529 Nov 18 16:15 pilot3.tar.gz
[2025-11-21 23:56:51] -rwx------. 1 boinc boinc     36292 Nov 18 16:24 runpilot2-wrapper.sh
[2025-11-21 23:56:51] -rw-r--r--. 1 boinc boinc      5112 Nov 18 16:24 queuedata.json
[2025-11-21 23:56:51] -rw-r--r--. 1 boinc boinc       100 Nov 20 22:42 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-21 23:56:51] -rwxr-xr-x. 1 boinc boinc      7986 Nov 20 22:42 run_atlas
[2025-11-21 23:56:51] -rw-r--r--. 1 boinc boinc       105 Nov 20 22:42 job.xml
[2025-11-21 23:56:51] -rw-r--r--. 2 boinc boinc 410628743 Nov 20 22:42 EVNT.47493065._000071.pool.root.1
[2025-11-21 23:56:51] -rw-r--r--. 1 boinc boinc      6390 Nov 20 22:42 init_data.xml
[2025-11-21 23:56:51] -rw-r--r--. 2 boinc boinc     15120 Nov 20 22:42 start_atlas.sh
[2025-11-21 23:56:51] drwxrwx--x. 2 boinc boinc        68 Nov 20 22:42 shared
[2025-11-21 23:56:51] -rw-r--r--. 2 boinc boinc    590098 Nov 20 22:42 input.tar.gz
[2025-11-21 23:56:51] -rw-r--r--. 1 boinc boinc         0 Nov 20 22:42 boinc_lockfile
[2025-11-21 23:56:51] -rw-r--r--. 1 boinc boinc      2771 Nov 20 22:43 pandaJob.out
[2025-11-21 23:56:51] -rw-------. 1 boinc boinc    989440 Nov 20 22:46 agis_schedconf.cvmfs.json
[2025-11-21 23:56:51] drwx------. 5 boinc boinc      4096 Nov 20 22:47 pilot3
[2025-11-21 23:56:51] -rw-r--r--. 1 boinc boinc       533 Nov 21 23:33 boinc_task_state.xml
[2025-11-21 23:56:51] -rw-------. 1 boinc boinc 914324763 Nov 21 23:52 HITS.47493068._000708.pool.root.1
[2025-11-21 23:56:51] -rw-------. 1 boinc boinc      1033 Nov 21 23:54 memory_monitor_summary.json
[2025-11-21 23:56:51] -rw-------. 1 boinc boinc   1526164 Nov 21 23:54 agis_ddmendpoints.agis.ALL.json
[2025-11-21 23:56:51] -rw-------. 1 boinc boinc   2541451 Nov 21 23:54 log.47493068._000708.job.log.tgz.1
[2025-11-21 23:56:51] -rw-------. 1 boinc boinc      7939 Nov 21 23:56 heartbeat.json
[2025-11-21 23:56:51] -rw-------. 1 boinc boinc        95 Nov 21 23:56 pilot_heartbeat.json
[2025-11-21 23:56:51] -rw-------. 1 boinc boinc      4884 Nov 21 23:56 pilotlog.txt
[2025-11-21 23:56:51] -rw-------. 1 boinc boinc  12022609 Nov 21 23:56 log.47493068._000708.job.log.1
[2025-11-21 23:56:51] -rw-r--r--. 1 boinc boinc      8192 Nov 21 23:56 boinc_mmap_file
[2025-11-21 23:56:51] -rw-r--r--. 1 boinc boinc        29 Nov 21 23:56 wrapper_checkpoint.txt
[2025-11-21 23:56:51] -rw-------. 1 boinc boinc       353 Nov 21 23:56 output.list
[2025-11-21 23:56:51] -rw-r--r--. 1 boinc boinc       620 Nov 21 23:56 runtime_log
[2025-11-21 23:56:51] -rw-------. 1 boinc boinc  14581760 Nov 21 23:56 result.tar.gz
[2025-11-21 23:56:51] -rw-r--r--. 1 boinc boinc      8703 Nov 21 23:56 runtime_log.err
[2025-11-21 23:56:51] -rw-------. 1 boinc boinc       662 Nov 21 23:56 jItMDmckcf8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmLNFKDmt6ER3m.diag
[2025-11-21 23:56:51] -rw-r--r--. 1 boinc boinc     21505 Nov 21 23:56 stderr.txt
[2025-11-21 23:56:51] HITS file was successfully produced:
[2025-11-21 23:56:51] -rw-------. 1 boinc boinc 914324763 Nov 21 23:52 shared/HITS.pool.root.1
[2025-11-21 23:56:51]  *** Contents of shared directory: ***
[2025-11-21 23:56:51] total 1308740
[2025-11-21 23:56:51] -rw-r--r--. 2 boinc boinc 410628743 Nov 20 22:42 ATLAS.root_0
[2025-11-21 23:56:51] -rw-r--r--. 2 boinc boinc     15120 Nov 20 22:42 start_atlas.sh
[2025-11-21 23:56:51] -rw-r--r--. 2 boinc boinc    590098 Nov 20 22:42 input.tar.gz
[2025-11-21 23:56:51] -rw-------. 1 boinc boinc 914324763 Nov 21 23:52 HITS.pool.root.1
[2025-11-21 23:56:51] -rw-------. 1 boinc boinc  14581760 Nov 21 23:56 result.tar.gz
23:56:53 (22166): run_atlas exited; CPU time 337077.428122
23:56:53 (22166): called boinc_finish(0)

</stderr_txt>
]]>

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