Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
21:59:23 (2622): wrapper (7.7.26015): starting
21:59:23 (2622): wrapper: running run_atlas (--nthreads 8)
[2025-11-20 21:59:23] Arguments: --nthreads 8
[2025-11-20 21:59:23] Threads: 8
[2025-11-20 21:59:23] Checking for CVMFS
[2025-11-20 21:59:24] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-20 21:59:25] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-20 21:59:25] Running cvmfs_config stat atlas.cern.ch
[2025-11-20 21:59:26] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-20 21:59:26] 2.11.2.0 22643 138147 142068 153088 0 307 17041306 25165825 4596 130560 2 41428374 99.867 23339494 2245 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-20 21:59:26] CVMFS is ok
[2025-11-20 21:59:26] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-20 21:59:26] Checking for apptainer binary...
[2025-11-20 21:59:26] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-20 21:59:26] Running /usr/bin/apptainer --version
[2025-11-20 21:59:27] apptainer version 1.3.2-1.el7
[2025-11-20 21:59:27] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-20 21:59:33] cg-vwn227.simple-grid.lan
[2025-11-20 21:59:33] apptainer works
[2025-11-20 21:59:33] Set ATHENA_PROC_NUMBER=8
[2025-11-20 21:59:33] Set ATHENA_CORE_NUMBER=8
[2025-11-20 21:59:33] Starting ATLAS job with PandaID=6891561009
[2025-11-20 21:59:33] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/6 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-21 23:51:29]  *** The last 200 lines of the pilot log: ***
[2025-11-21 23:51:29] 2025-11-21 22:50:41,358 | INFO     | sum of deviations: 3173543624096.3833
[2025-11-21 23:51:29] 2025-11-21 22:50:41,358 | INFO     | mean x: 1763719019.964427
[2025-11-21 23:51:29] 2025-11-21 22:50:41,359 | INFO     | mean y: 2880225.3036890645
[2025-11-21 23:51:29] 2025-11-21 22:50:41,359 | INFO     | intersect: -5157494038.975942
[2025-11-21 23:51:29] 2025-11-21 22:50:41,364 | INFO     | chi2: 10.14848596481327
[2025-11-21 23:51:29] 2025-11-21 22:50:41,366 | INFO     | sum of square deviations: 1073975573424.8202
[2025-11-21 23:51:29] 2025-11-21 22:50:41,442 | INFO     | sum of deviations: 3681893676587.249
[2025-11-21 23:51:29] 2025-11-21 22:50:41,442 | INFO     | mean x: 1763718867.4692664
[2025-11-21 23:51:29] 2025-11-21 22:50:41,442 | INFO     | mean y: 2887481.7686715135
[2025-11-21 23:51:29] 2025-11-21 22:50:41,443 | INFO     | intersect: -6043642351.963429
[2025-11-21 23:51:29] 2025-11-21 22:50:41,444 | INFO     | chi2: 7.018046585815762
[2025-11-21 23:51:29] 2025-11-21 22:50:41,445 | INFO     | current chi2=7.018046585815762 (change=30.84636851104033 %)
[2025-11-21 23:51:29] 2025-11-21 22:50:41,447 | INFO     | sum of square deviations: 1063363903613.9902
[2025-11-21 23:51:29] 2025-11-21 22:50:41,509 | INFO     | sum of deviations: 4198865037257.372
[2025-11-21 23:51:29] 2025-11-21 22:50:41,510 | INFO     | mean x: 1763718714.974138
[2025-11-21 23:51:29] 2025-11-21 22:50:41,510 | INFO     | mean y: 2894908.419761273
[2025-11-21 23:51:29] 2025-11-21 22:50:41,510 | INFO     | intersect: -6961434821.687108
[2025-11-21 23:51:29] 2025-11-21 22:50:41,512 | INFO     | chi2: 3.7078384447853834
[2025-11-21 23:51:29] 2025-11-21 22:50:41,513 | INFO     | current chi2=3.7078384447853834 (change=47.16708703132109 %)
[2025-11-21 23:51:29] 2025-11-21 22:50:41,515 | INFO     | sum of square deviations: 1052822374653.0897
[2025-11-21 23:51:29] 2025-11-21 22:50:41,578 | INFO     | sum of deviations: 4409829167012.262
[2025-11-21 23:51:29] 2025-11-21 22:50:41,579 | INFO     | mean x: 1763718562.4790418
[2025-11-21 23:51:29] 2025-11-21 22:50:41,579 | INFO     | mean y: 2897959.29407851
[2025-11-21 23:51:29] 2025-11-21 22:50:41,579 | INFO     | intersect: -7384575698.628329
[2025-11-21 23:51:29] 2025-11-21 22:50:41,581 | INFO     | chi2: 3.0520884668523482
[2025-11-21 23:51:29] 2025-11-21 22:50:41,581 | INFO     | current chi2=3.0520884668523482 (change=17.685505657757727 %)
[2025-11-21 23:51:29] 2025-11-21 22:50:41,581 | INFO     | right removable region: 1502
[2025-11-21 23:51:29] 2025-11-21 22:50:41,584 | INFO     | sum of square deviations: 1073974217394.8213
[2025-11-21 23:51:29] 2025-11-21 22:50:41,617 | INFO     | monitor loop #6243: job 0:6891561009 is in state 'finished'
[2025-11-21 23:51:29] 2025-11-21 22:50:41,617 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-21 23:51:29] 2025-11-21 22:50:41,657 | INFO     | sum of deviations: 2691895270738.2446
[2025-11-21 23:51:29] 2025-11-21 22:50:41,658 | INFO     | mean x: 1763719172.4692664
[2025-11-21 23:51:29] 2025-11-21 22:50:41,658 | INFO     | mean y: 2887097.4137475216
[2025-11-21 23:51:29] 2025-11-21 22:50:41,658 | INFO     | intersect: -4417840348.7228775
[2025-11-21 23:51:29] 2025-11-21 22:50:41,660 | INFO     | chi2: 7.464786130874873
[2025-11-21 23:51:29] 2025-11-21 22:50:41,660 | INFO     | current chi2=7.464786130874873 (change=26.44433704932238 %)
[2025-11-21 23:51:29] 2025-11-21 22:50:41,662 | INFO     | sum of square deviations: 1063361929663.5354
[2025-11-21 23:51:29] 2025-11-21 22:50:41,729 | INFO     | time since job start (92884s) is within the limit (172800.0s)
[2025-11-21 23:51:29] 2025-11-21 22:50:41,741 | INFO     | sum of deviations: 2582856621618.02
[2025-11-21 23:51:29] 2025-11-21 22:50:41,742 | INFO     | mean x: 1763719324.968833
[2025-11-21 23:51:29] 2025-11-21 22:50:41,742 | INFO     | mean y: 2888664.0855437666
[2025-11-21 23:51:29] 2025-11-21 22:50:41,742 | INFO     | intersect: -4281103465.1162477
[2025-11-21 23:51:29] 2025-11-21 22:50:41,744 | INFO     | chi2: 7.391884316257777
[2025-11-21 23:51:29] 2025-11-21 22:50:41,744 | INFO     | current chi2=7.391884316257777 (change=0.9766095550355889 %)
[2025-11-21 23:51:29] 2025-11-21 22:50:41,745 | INFO     | left removable region: 20
[2025-11-21 23:51:29] 2025-11-21 22:50:41,747 | INFO     | sum of square deviations: 1009305046465.6719
[2025-11-21 23:51:29] 2025-11-21 22:50:41,813 | INFO     | sum of deviations: 3669853329232.2856
[2025-11-21 23:51:29] 2025-11-21 22:50:41,814 | INFO     | mean x: 1763719141.985155
[2025-11-21 23:51:29] 2025-11-21 22:50:41,814 | INFO     | mean y: 2909108.831309042
[2025-11-21 23:51:29] 2025-11-21 22:50:41,814 | INFO     | intersect: -6410008955.643141
[2025-11-21 23:51:29] 2025-11-21 22:50:41,816 | INFO     | chi2: 0.19773141946715206
[2025-11-21 23:51:29] 2025-11-21 22:50:41,817 | INFO     | current memory leak: 3.64 B/s (using 1482 data points, chi2=0.20)
[2025-11-21 23:51:29] 2025-11-21 22:50:41,819 | INFO     | could have reported an average CPU frequency of 1999 MHz (51 samples)
[2025-11-21 23:51:29] 2025-11-21 22:50:41,820 | INFO     | ..............................
[2025-11-21 23:51:29] 2025-11-21 22:50:41,820 | INFO     | . Timing measurements:
[2025-11-21 23:51:29] 2025-11-21 22:50:41,820 | INFO     | . get job = 0 s
[2025-11-21 23:51:29] 2025-11-21 22:50:41,820 | INFO     | . initial setup = 10 s
[2025-11-21 23:51:29] 2025-11-21 22:50:41,820 | INFO     | . payload setup = 16 s
[2025-11-21 23:51:29] 2025-11-21 22:50:41,820 | INFO     | . stage-in = 0 s
[2025-11-21 23:51:29] 2025-11-21 22:50:41,820 | INFO     | . payload execution = 92609 s
[2025-11-21 23:51:29] 2025-11-21 22:50:41,820 | INFO     | . stage-out = 7 s
[2025-11-21 23:51:29] 2025-11-21 22:50:41,820 | INFO     | . log creation = 1 s
[2025-11-21 23:51:29] 2025-11-21 22:50:41,820 | INFO     | ..............................
[2025-11-21 23:51:29] 2025-11-21 22:50:42,203 | INFO     | 
[2025-11-21 23:51:29] 2025-11-21 22:50:42,203 | INFO     | job summary report
[2025-11-21 23:51:29] 2025-11-21 22:50:42,203 | INFO     | --------------------------------------------------
[2025-11-21 23:51:29] 2025-11-21 22:50:42,203 | INFO     | PanDA job id: 6891561009
[2025-11-21 23:51:29] 2025-11-21 22:50:42,203 | INFO     | task id: 47493068
[2025-11-21 23:51:29] 2025-11-21 22:50:42,203 | INFO     | errors: (none)
[2025-11-21 23:51:29] 2025-11-21 22:50:42,204 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-21 23:51:29] 2025-11-21 22:50:42,204 | INFO     | pilot state: finished 
[2025-11-21 23:51:29] 2025-11-21 22:50:42,204 | INFO     | transexitcode: 0
[2025-11-21 23:51:29] 2025-11-21 22:50:42,204 | INFO     | exeerrorcode: 0
[2025-11-21 23:51:29] 2025-11-21 22:50:42,204 | INFO     | exeerrordiag: 
[2025-11-21 23:51:29] 2025-11-21 22:50:42,204 | INFO     | exitcode: 0
[2025-11-21 23:51:29] 2025-11-21 22:50:42,204 | INFO     | exitmsg: OK
[2025-11-21 23:51:29] 2025-11-21 22:50:42,204 | INFO     | cpuconsumptiontime: 344237 s
[2025-11-21 23:51:29] 2025-11-21 22:50:42,204 | INFO     | nevents: 1000
[2025-11-21 23:51:29] 2025-11-21 22:50:42,205 | INFO     | neventsw: 0
[2025-11-21 23:51:29] 2025-11-21 22:50:42,205 | INFO     | pid: 12955
[2025-11-21 23:51:29] 2025-11-21 22:50:42,205 | INFO     | pgrp: 12955
[2025-11-21 23:51:29] 2025-11-21 22:50:42,205 | INFO     | corecount: 8
[2025-11-21 23:51:29] 2025-11-21 22:50:42,205 | INFO     | event service: False
[2025-11-21 23:51:29] 2025-11-21 22:50:42,205 | INFO     | sizes: {0: 2298565, 1: 2298820, 2: 2298820, 12: 2298848, 23: 2298876, 34: 2298904, 45: 2299060, 55: 2299088, 66: 2299116, 77: 2299144, 87: 2299200, 98: 2299508, 10
[2025-11-21 23:51:29] 2025-11-21 22:50:42,205 | INFO     | --------------------------------------------------
[2025-11-21 23:51:29] 2025-11-21 22:50:42,205 | INFO     | 
[2025-11-21 23:51:29] 2025-11-21 22:50:42,206 | INFO     | executing command: ls -lF /var/lib/boinc/slots/6
[2025-11-21 23:51:29] 2025-11-21 22:50:42,846 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-21 23:51:29] 2025-11-21 22:50:42,847 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-21 23:51:29] 2025-11-21 22:50:42,847 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-21 23:51:29] 2025-11-21 22:50:42,847 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-21 23:51:29] 2025-11-21 22:50:42,847 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-21 23:51:29] 2025-11-21 22:50:42,847 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-21 23:51:29] 2025-11-21 22:50:42,847 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-21 23:51:29] 2025-11-21 22:50:42,848 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-21 23:51:29] 2025-11-21 22:50:42,848 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-21 23:51:29] 2025-11-21 22:50:42,848 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-21 23:51:29] 2025-11-21 22:50:42,848 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-21 23:51:29] 2025-11-21 22:50:42,848 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-21 23:51:29] 2025-11-21 22:50:42,848 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-21 23:51:29] 2025-11-21 22:50:42,848 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-21 23:51:29] 2025-11-21 22:50:42,848 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-21 23:51:29] 2025-11-21 22:50:42,848 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-21 23:51:29] 2025-11-21 22:50:42,848 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-21 23:51:29] 2025-11-21 22:50:42,849 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-21 23:51:29] 2025-11-21 22:50:42,849 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-21 23:51:29] 2025-11-21 22:50:42,849 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-21 23:51:29] 2025-11-21 22:50:42,849 | INFO     | job 6891561009 has completed (purged errors)
[2025-11-21 23:51:29] 2025-11-21 22:50:42,849 | INFO     | overall cleanup function is called
[2025-11-21 23:51:29] 2025-11-21 22:50:43,871 | INFO     | --- collectZombieJob: --- 10, [12955]
[2025-11-21 23:51:29] 2025-11-21 22:50:43,872 | INFO     | zombie collector waiting for pid 12955
[2025-11-21 23:51:29] 2025-11-21 22:50:43,872 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-21 23:51:29] 2025-11-21 22:50:43,872 | INFO     | collected zombie processes
[2025-11-21 23:51:29] 2025-11-21 22:50:43,872 | INFO     | will attempt to kill all subprocesses of pid=12955
[2025-11-21 23:51:29] 2025-11-21 22:50:43,977 | INFO     | process IDs to be killed: [12955] (in reverse order)
[2025-11-21 23:51:29] 2025-11-21 22:50:44,675 | WARNING  | found no corresponding commands to process id(s)
[2025-11-21 23:51:29] 2025-11-21 22:50:44,675 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-21 23:51:29] 2025-11-21 22:50:44,678 | INFO     | did not find any defunct processes belonging to 12955
[2025-11-21 23:51:29] 2025-11-21 22:50:44,682 | INFO     | did not find any defunct processes belonging to 12955
[2025-11-21 23:51:29] 2025-11-21 22:50:44,724 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-21 23:51:29] 2025-11-21 22:50:44,724 | INFO     | ready for new job
[2025-11-21 23:51:29] 2025-11-21 22:50:44,724 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-21 23:51:29] 2025-11-21 22:50:44,731 | INFO     | ***************************************
[2025-11-21 23:51:29] 2025-11-21 22:50:44,732 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-21 23:51:29] 2025-11-21 22:50:44,732 | INFO     | ***************************************
[2025-11-21 23:51:29] 2025-11-21 22:50:44,732 | INFO     | 
[2025-11-21 23:51:29] 2025-11-21 22:50:44,733 | INFO     | pilot is running in a VM
[2025-11-21 23:51:29] 2025-11-21 22:50:44,733 | INFO     | architecture information:
[2025-11-21 23:51:29] 2025-11-21 22:50:44,749 | INFO     | executing command: cat /etc/os-release
[2025-11-21 23:51:29] 2025-11-21 22:50:44,924 | INFO     | cat /etc/os-release:
[2025-11-21 23:51:29] NAME="CentOS Linux"
[2025-11-21 23:51:29] VERSION="7 (Core)"
[2025-11-21 23:51:29] ID="centos"
[2025-11-21 23:51:29] ID_LIKE="rhel fedora"
[2025-11-21 23:51:29] VERSION_ID="7"
[2025-11-21 23:51:29] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-21 23:51:29] ANSI_COLOR="0;31"
[2025-11-21 23:51:29] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-21 23:51:29] HOME_URL="https://www.centos.org/"
[2025-11-21 23:51:29] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-21 23:51:29] 
[2025-11-21 23:51:29] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-21 23:51:29] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-21 23:51:29] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-21 23:51:29] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-21 23:51:29] 
[2025-11-21 23:51:29] 2025-11-21 22:50:44,925 | INFO     | ***************************************
[2025-11-21 23:51:29] 2025-11-21 22:50:45,429 | INFO     | executing command: df -mP /var/lib/boinc/slots/6
[2025-11-21 23:51:29] 2025-11-21 22:50:45,657 | INFO     | sufficient remaining disk space (492179554304 B)
[2025-11-21 23:51:29] 2025-11-21 22:50:45,658 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-21 23:51:29] 2025-11-21 22:50:45,658 | INFO     | current server update state: UPDATING_FINAL
[2025-11-21 23:51:29] 2025-11-21 22:50:45,658 | INFO     | update_server=False
[2025-11-21 23:51:29] 2025-11-21 22:50:45,658 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-21 23:51:29] 2025-11-21 22:50:45,658 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-21 23:51:29] 2025-11-21 22:50:45,664 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-21 23:51:29] 2025-11-21 22:50:45,664 | INFO     | aborting loop
[2025-11-21 23:51:29] 2025-11-21 22:50:46,123 | INFO     | all job control threads have been joined
[2025-11-21 23:51:29] 2025-11-21 22:50:46,291 | INFO     | all payload control threads have been joined
[2025-11-21 23:51:29] 2025-11-21 22:50:46,534 | INFO     | all data control threads have been joined
[2025-11-21 23:51:29] 2025-11-21 22:50:46,666 | INFO     | [job] retrieve thread has finished
[2025-11-21 23:51:29] 2025-11-21 22:50:46,670 | INFO     | [job] job monitor thread has finished
[2025-11-21 23:51:29] 2025-11-21 22:50:46,855 | INFO     | [payload] validate_post thread has finished
[2025-11-21 23:51:29] 2025-11-21 22:50:46,988 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-21 23:51:29] 2025-11-21 22:50:47,111 | INFO     | [payload] validate_pre thread has finished
[2025-11-21 23:51:29] 2025-11-21 22:50:47,130 | INFO     | [job] control thread has finished
[2025-11-21 23:51:29] 2025-11-21 22:50:47,298 | INFO     | [payload] control thread has finished
[2025-11-21 23:51:29] 2025-11-21 22:50:47,308 | INFO     | [payload] execute_payloads thread has finished
[2025-11-21 23:51:29] 2025-11-21 22:50:47,367 | INFO     | [data] copytool_in thread has finished
[2025-11-21 23:51:29] 2025-11-21 22:50:47,541 | INFO     | [data] control thread has finished
[2025-11-21 23:51:29] 2025-11-21 22:50:47,603 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-21 23:51:29] 2025-11-21 22:50:47,668 | INFO     | [data] copytool_out thread has finished
[2025-11-21 23:51:29] 2025-11-21 22:50:47,675 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-21 23:51:29] 2025-11-21 22:50:47,773 | INFO     | [job] validate thread has finished
[2025-11-21 23:51:29] 2025-11-21 22:50:47,804 | INFO     | [job] create_data_payload thread has finished
[2025-11-21 23:51:29] 2025-11-21 22:50:47,994 | INFO     | [job] queue monitor thread has finished
[2025-11-21 23:51:29] 2025-11-21 22:50:48,055 | INFO     | [payload] failed_post thread has finished
[2025-11-21 23:51:29] 2025-11-21 22:50:51,612 | INFO     | [data] queue_monitor thread has finished
[2025-11-21 23:51:29] 2025-11-21 22:51:14,914 | INFO     | PID=6419 has CPU usage=2.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-11-21 23:51:29] 2025-11-21 22:51:14,914 | INFO     | .. there are 9 such processes running
[2025-11-21 23:51:29] 2025-11-21 22:51:14,916 | INFO     | found 0 job(s) in 20 queues
[2025-11-21 23:51:29] 2025-11-21 22:51:14,916 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-21 23:51:29] 2025-11-21 22:51:14,916 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-21 23:51:29] 2025-11-21 22:51:18,651 | INFO     | [monitor] cgroup control has ended
[2025-11-21 23:51:29] 2025-11-21 22:51:20,553 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139687339861824)>', '<ExcThread(monitor, started 139687112926976)>']
[2025-11-21 23:51:29] 2025-11-21 22:51:20,951 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-21 23:51:29] 2025-11-21 22:51:20,952 | INFO     | [monitor] control thread has ended
[2025-11-21 23:51:29] 2025-11-21 22:51:25,578 | INFO     | all workflow threads have been joined
[2025-11-21 23:51:29] 2025-11-21 22:51:25,579 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-21 23:51:29] 2025-11-21 22:51:25,579 | INFO     | traces error code: 0
[2025-11-21 23:51:29] 2025-11-21 22:51:25,580 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-21 23:51:29] 2025-11-21 22:51:25,858 [wrapper] ==== pilot stdout END ====
[2025-11-21 23:51:29] 2025-11-21 22:51:25,869 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-21 23:51:29] 2025-11-21 22:51:25,877 [wrapper] pilotpid: 6419
[2025-11-21 23:51:29] 2025-11-21 22:51:25,929 [wrapper] Pilot exit status: 0
[2025-11-21 23:51:29] 2025-11-21 22:51:26,324 [wrapper] pandaids: 6891561009
[2025-11-21 23:51:29] 2025-11-21 22:51:27,239 [wrapper] cleanup supervisor_pilot  4868 6420
[2025-11-21 23:51:29] 2025-11-21 22:51:27,341 [wrapper] Test setup, not cleaning
[2025-11-21 23:51:29] 2025-11-21 22:51:27,445 [wrapper] apfmon messages muted
[2025-11-21 23:51:29] 2025-11-21 22:51:27,538 [wrapper] ==== wrapper stdout END ====
[2025-11-21 23:51:29] 2025-11-21 22:51:27,687 [wrapper] ==== wrapper stderr END ====
[2025-11-21 23:51:29]  *** Error codes and diagnostics ***
[2025-11-21 23:51:29]     "exeErrorCode": 0,
[2025-11-21 23:51:29]     "exeErrorDiag": "",
[2025-11-21 23:51:29]     "pilotErrorCode": 0,
[2025-11-21 23:51:29]     "pilotErrorDiag": "",
[2025-11-21 23:51:29]  *** Listing of results directory ***
[2025-11-21 23:51:29] total 1332688
[2025-11-21 23:51:29] -rw-r--r--. 1 boinc boinc    576529 Nov 18 16:15 pilot3.tar.gz
[2025-11-21 23:51:29] -rwx------. 1 boinc boinc     36292 Nov 18 16:26 runpilot2-wrapper.sh
[2025-11-21 23:51:29] -rw-r--r--. 1 boinc boinc      5112 Nov 18 16:27 queuedata.json
[2025-11-21 23:51:29] -rw-r--r--. 1 boinc boinc       100 Nov 20 21:59 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-21 23:51:29] -rwxr-xr-x. 1 boinc boinc      7986 Nov 20 21:59 run_atlas
[2025-11-21 23:51:29] -rw-r--r--. 1 boinc boinc       105 Nov 20 21:59 job.xml
[2025-11-21 23:51:29] -rw-r--r--. 2 boinc boinc 409960985 Nov 20 21:59 EVNT.47493065._000083.pool.root.1
[2025-11-21 23:51:29] -rw-r--r--. 2 boinc boinc    590100 Nov 20 21:59 input.tar.gz
[2025-11-21 23:51:29] -rw-r--r--. 1 boinc boinc      6391 Nov 20 21:59 init_data.xml
[2025-11-21 23:51:29] -rw-r--r--. 2 boinc boinc     15120 Nov 20 21:59 start_atlas.sh
[2025-11-21 23:51:29] drwxrwx--x. 2 boinc boinc        68 Nov 20 21:59 shared
[2025-11-21 23:51:29] -rw-r--r--. 1 boinc boinc         0 Nov 20 21:59 boinc_lockfile
[2025-11-21 23:51:29] -rw-r--r--. 1 boinc boinc      2771 Nov 20 21:59 pandaJob.out
[2025-11-21 23:51:29] -rw-------. 1 boinc boinc    989440 Nov 20 22:02 agis_schedconf.cvmfs.json
[2025-11-21 23:51:29] drwx------. 5 boinc boinc      4096 Nov 20 22:02 pilot3
[2025-11-21 23:51:29] -rw-r--r--. 1 boinc boinc       533 Nov 21 23:30 boinc_task_state.xml
[2025-11-21 23:51:29] -rw-------. 1 boinc boinc 920897775 Nov 21 23:47 HITS.47493068._000822.pool.root.1
[2025-11-21 23:51:29] -rw-------. 1 boinc boinc      1035 Nov 21 23:48 memory_monitor_summary.json
[2025-11-21 23:51:29] -rw-------. 1 boinc boinc   1526164 Nov 21 23:49 agis_ddmendpoints.agis.ALL.json
[2025-11-21 23:51:29] -rw-------. 1 boinc boinc   2575273 Nov 21 23:49 log.47493068._000822.job.log.tgz.1
[2025-11-21 23:51:29] -rw-------. 1 boinc boinc      7944 Nov 21 23:50 heartbeat.json
[2025-11-21 23:51:29] -rw-------. 1 boinc boinc        95 Nov 21 23:51 pilot_heartbeat.json
[2025-11-21 23:51:29] -rw-r--r--. 1 boinc boinc        29 Nov 21 23:51 wrapper_checkpoint.txt
[2025-11-21 23:51:29] -rw-r--r--. 1 boinc boinc      8192 Nov 21 23:51 boinc_mmap_file
[2025-11-21 23:51:29] -rw-------. 1 boinc boinc      4883 Nov 21 23:51 pilotlog.txt
[2025-11-21 23:51:29] -rw-------. 1 boinc boinc  12381549 Nov 21 23:51 log.47493068._000822.job.log.1
[2025-11-21 23:51:29] -rw-------. 1 boinc boinc       353 Nov 21 23:51 output.list
[2025-11-21 23:51:29] -rw-r--r--. 1 boinc boinc       620 Nov 21 23:51 runtime_log
[2025-11-21 23:51:29] -rw-------. 1 boinc boinc  14970880 Nov 21 23:51 result.tar.gz
[2025-11-21 23:51:29] -rw-r--r--. 1 boinc boinc      8703 Nov 21 23:51 runtime_log.err
[2025-11-21 23:51:29] -rw-------. 1 boinc boinc       662 Nov 21 23:51 HVtMDmSmcf8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmGOFKDm7UQBVm.diag
[2025-11-21 23:51:29] -rw-r--r--. 1 boinc boinc     20917 Nov 21 23:51 stderr.txt
[2025-11-21 23:51:29] HITS file was successfully produced:
[2025-11-21 23:51:29] -rw-------. 1 boinc boinc 920897775 Nov 21 23:47 shared/HITS.pool.root.1
[2025-11-21 23:51:29]  *** Contents of shared directory: ***
[2025-11-21 23:51:29] total 1314888
[2025-11-21 23:51:29] -rw-r--r--. 2 boinc boinc 409960985 Nov 20 21:59 ATLAS.root_0
[2025-11-21 23:51:29] -rw-r--r--. 2 boinc boinc    590100 Nov 20 21:59 input.tar.gz
[2025-11-21 23:51:29] -rw-r--r--. 2 boinc boinc     15120 Nov 20 21:59 start_atlas.sh
[2025-11-21 23:51:29] -rw-------. 1 boinc boinc 920897775 Nov 21 23:47 HITS.pool.root.1
[2025-11-21 23:51:29] -rw-------. 1 boinc boinc  14970880 Nov 21 23:51 result.tar.gz
23:51:31 (2622): run_atlas exited; CPU time 344744.579063
23:51:31 (2622): called boinc_finish(0)

</stderr_txt>
]]>

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