Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
20:19:51 (22637): wrapper (7.7.26015): starting
20:19:51 (22637): wrapper: running run_atlas (--nthreads 8)
[2025-11-19 20:19:51] Arguments: --nthreads 8
[2025-11-19 20:19:51] Threads: 8
[2025-11-19 20:19:51] Checking for CVMFS
[2025-11-19 20:19:51] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-19 20:19:51] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-19 20:19:51] Running cvmfs_config stat atlas.cern.ch
[2025-11-19 20:19:51] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-19 20:19:51] 2.11.2.0 3755 275736 143412 153053 1 294 15917823 25165824 3834 130560 2 136079515 99.891 71581532 3246 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-19 20:19:51] CVMFS is ok
[2025-11-19 20:19:51] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-19 20:19:51] Checking for apptainer binary...
[2025-11-19 20:19:51] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-19 20:19:51] Running /usr/bin/apptainer --version
[2025-11-19 20:19:51] apptainer version 1.3.2-1.el7
[2025-11-19 20:19:51] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-19 20:19:53] cg-vwn224.simple-grid.lan
[2025-11-19 20:19:53] apptainer works
[2025-11-19 20:19:53] Set ATHENA_PROC_NUMBER=8
[2025-11-19 20:19:53] Set ATHENA_CORE_NUMBER=8
[2025-11-19 20:19:53] Starting ATLAS job with PandaID=6891571871
[2025-11-19 20:19:53] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-20 21:54:18]  *** The last 200 lines of the pilot log: ***
[2025-11-20 21:54:18] 2025-11-20 20:53:24,326 | INFO     | sum of deviations: 3670624018597.3047
[2025-11-20 21:54:18] 2025-11-20 20:53:24,326 | INFO     | mean x: 1763626004.1973422
[2025-11-20 21:54:18] 2025-11-20 20:53:24,326 | INFO     | mean y: 2866680.776744186
[2025-11-20 21:54:18] 2025-11-20 20:53:24,327 | INFO     | intersect: -6121456771.682367
[2025-11-20 21:54:18] 2025-11-20 20:53:24,328 | INFO     | chi2: 10.2081969806808
[2025-11-20 21:54:18] 2025-11-20 20:53:24,331 | INFO     | sum of square deviations: 1046532658940.1985
[2025-11-20 21:54:18] 2025-11-20 20:53:24,391 | INFO     | sum of deviations: 4165552292849.277
[2025-11-20 21:54:18] 2025-11-20 20:53:24,392 | INFO     | mean x: 1763625851.7013333
[2025-11-20 21:54:18] 2025-11-20 20:53:24,392 | INFO     | mean y: 2873868.0653333333
[2025-11-20 21:54:18] 2025-11-20 20:53:24,392 | INFO     | intersect: -7016950738.003214
[2025-11-20 21:54:18] 2025-11-20 20:53:24,394 | INFO     | chi2: 7.141457414077194
[2025-11-20 21:54:18] 2025-11-20 20:53:24,394 | INFO     | current chi2=7.141457414077194 (change=30.041931718279603 %)
[2025-11-20 21:54:18] 2025-11-20 20:53:24,396 | INFO     | sum of square deviations: 1036102743207.9574
[2025-11-20 21:54:18] 2025-11-20 20:53:24,457 | INFO     | sum of deviations: 4615800771698.052
[2025-11-20 21:54:18] 2025-11-20 20:53:24,457 | INFO     | mean x: 1763625699.205351
[2025-11-20 21:54:18] 2025-11-20 20:53:24,457 | INFO     | mean y: 2880447.6675585285
[2025-11-20 21:54:18] 2025-11-20 20:53:24,457 | INFO     | intersect: -7854009148.217505
[2025-11-20 21:54:18] 2025-11-20 20:53:24,459 | INFO     | chi2: 4.368009971923344
[2025-11-20 21:54:18] 2025-11-20 20:53:24,460 | INFO     | current chi2=4.368009971923344 (change=38.83587454693559 %)
[2025-11-20 21:54:18] 2025-11-20 20:53:24,462 | INFO     | sum of square deviations: 1025742363663.1676
[2025-11-20 21:54:18] 2025-11-20 20:53:24,524 | INFO     | sum of deviations: 4831218764507.673
[2025-11-20 21:54:18] 2025-11-20 20:53:24,525 | INFO     | mean x: 1763625546.709396
[2025-11-20 21:54:18] 2025-11-20 20:53:24,525 | INFO     | mean y: 2883616.973825503
[2025-11-20 21:54:18] 2025-11-20 20:53:24,525 | INFO     | intersect: -8303744964.104726
[2025-11-20 21:54:18] 2025-11-20 20:53:24,527 | INFO     | chi2: 3.6293603102936745
[2025-11-20 21:54:18] 2025-11-20 20:53:24,527 | INFO     | current chi2=3.6293603102936745 (change=16.91043899573388 %)
[2025-11-20 21:54:18] 2025-11-20 20:53:24,528 | INFO     | right removable region: 1489
[2025-11-20 21:54:18] 2025-11-20 20:53:24,530 | INFO     | sum of square deviations: 1046531559720.1962
[2025-11-20 21:54:18] 2025-11-20 20:53:24,592 | INFO     | sum of deviations: 3181633708837.983
[2025-11-20 21:54:18] 2025-11-20 20:53:24,592 | INFO     | mean x: 1763626156.7013333
[2025-11-20 21:54:18] 2025-11-20 20:53:24,592 | INFO     | mean y: 2873779.9553333335
[2025-11-20 21:54:18] 2025-11-20 20:53:24,593 | INFO     | intersect: -5358849311.749203
[2025-11-20 21:54:18] 2025-11-20 20:53:24,595 | INFO     | chi2: 7.466892315699844
[2025-11-20 21:54:18] 2025-11-20 20:53:24,595 | INFO     | current chi2=7.466892315699844 (change=26.85395540631637 %)
[2025-11-20 21:54:18] 2025-11-20 20:53:24,597 | INFO     | sum of square deviations: 1036100910529.5891
[2025-11-20 21:54:18] 2025-11-20 20:53:24,661 | INFO     | monitor loop #6125: job 0:6891571871 is in state 'finished'
[2025-11-20 21:54:18] 2025-11-20 20:53:24,662 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-20 21:54:18] 2025-11-20 20:53:24,667 | INFO     | sum of deviations: 3031386413397.8994
[2025-11-20 21:54:18] 2025-11-20 20:53:24,667 | INFO     | mean x: 1763626309.2026756
[2025-11-20 21:54:18] 2025-11-20 20:53:24,668 | INFO     | mean y: 2875974.82541806
[2025-11-20 21:54:18] 2025-11-20 20:53:24,668 | INFO     | intersect: -5157077826.677775
[2025-11-20 21:54:18] 2025-11-20 20:53:24,670 | INFO     | chi2: 7.203122904913194
[2025-11-20 21:54:18] 2025-11-20 20:53:24,670 | INFO     | current chi2=7.203122904913194 (change=3.532519281576486 %)
[2025-11-20 21:54:18] 2025-11-20 20:53:24,670 | INFO     | left removable region: 20
[2025-11-20 21:54:18] 2025-11-20 20:53:24,672 | INFO     | sum of square deviations: 982979725769.7288
[2025-11-20 21:54:18] 2025-11-20 20:53:24,737 | INFO     | sum of deviations: 3985808765106.432
[2025-11-20 21:54:18] 2025-11-20 20:53:24,738 | INFO     | mean x: 1763626126.2171545
[2025-11-20 21:54:18] 2025-11-20 20:53:24,738 | INFO     | mean y: 2896768.1177671887
[2025-11-20 21:54:18] 2025-11-20 20:53:24,738 | INFO     | intersect: -7148294948.214488
[2025-11-20 21:54:18] 2025-11-20 20:53:24,740 | INFO     | chi2: 0.4238966305272601
[2025-11-20 21:54:18] 2025-11-20 20:53:24,740 | INFO     | current memory leak: 4.05 B/s (using 1469 data points, chi2=0.42)
[2025-11-20 21:54:18] 2025-11-20 20:53:24,743 | INFO     | could have reported an average CPU frequency of 1999 MHz (51 samples)
[2025-11-20 21:54:18] 2025-11-20 20:53:24,743 | INFO     | ..............................
[2025-11-20 21:54:18] 2025-11-20 20:53:24,743 | INFO     | . Timing measurements:
[2025-11-20 21:54:18] 2025-11-20 20:53:24,743 | INFO     | . get job = 0 s
[2025-11-20 21:54:18] 2025-11-20 20:53:24,743 | INFO     | . initial setup = 2 s
[2025-11-20 21:54:18] 2025-11-20 20:53:24,743 | INFO     | . payload setup = 40 s
[2025-11-20 21:54:18] 2025-11-20 20:53:24,743 | INFO     | . stage-in = 0 s
[2025-11-20 21:54:18] 2025-11-20 20:53:24,743 | INFO     | . payload execution = 91810 s
[2025-11-20 21:54:18] 2025-11-20 20:53:24,743 | INFO     | . stage-out = 6 s
[2025-11-20 21:54:18] 2025-11-20 20:53:24,744 | INFO     | . log creation = 2 s
[2025-11-20 21:54:18] 2025-11-20 20:53:24,744 | INFO     | ..............................
[2025-11-20 21:54:18] 2025-11-20 20:53:24,865 | INFO     | 
[2025-11-20 21:54:18] 2025-11-20 20:53:24,865 | INFO     | job summary report
[2025-11-20 21:54:18] 2025-11-20 20:53:24,865 | INFO     | --------------------------------------------------
[2025-11-20 21:54:18] 2025-11-20 20:53:24,866 | INFO     | PanDA job id: 6891571871
[2025-11-20 21:54:18] 2025-11-20 20:53:24,866 | INFO     | task id: 47493068
[2025-11-20 21:54:18] 2025-11-20 20:53:24,866 | INFO     | errors: (none)
[2025-11-20 21:54:18] 2025-11-20 20:53:24,866 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-20 21:54:18] 2025-11-20 20:53:24,866 | INFO     | pilot state: finished 
[2025-11-20 21:54:18] 2025-11-20 20:53:24,866 | INFO     | transexitcode: 0
[2025-11-20 21:54:18] 2025-11-20 20:53:24,866 | INFO     | exeerrorcode: 0
[2025-11-20 21:54:18] 2025-11-20 20:53:24,866 | INFO     | exeerrordiag: 
[2025-11-20 21:54:18] 2025-11-20 20:53:24,866 | INFO     | exitcode: 0
[2025-11-20 21:54:18] 2025-11-20 20:53:24,867 | INFO     | exitmsg: OK
[2025-11-20 21:54:18] 2025-11-20 20:53:24,867 | INFO     | cpuconsumptiontime: 340963 s
[2025-11-20 21:54:18] 2025-11-20 20:53:24,867 | INFO     | nevents: 1000
[2025-11-20 21:54:18] 2025-11-20 20:53:24,867 | INFO     | neventsw: 0
[2025-11-20 21:54:18] 2025-11-20 20:53:24,867 | INFO     | pid: 4976
[2025-11-20 21:54:18] 2025-11-20 20:53:24,867 | INFO     | pgrp: 4976
[2025-11-20 21:54:18] 2025-11-20 20:53:24,867 | INFO     | corecount: 8
[2025-11-20 21:54:18] 2025-11-20 20:53:24,867 | INFO     | event service: False
[2025-11-20 21:54:18] 2025-11-20 20:53:24,867 | INFO     | sizes: {0: 2296371, 1: 2297227, 2: 2297227, 11: 2297517, 13: 2297545, 91852: 2361965, 91860: 2372611, 91952: 2372801}
[2025-11-20 21:54:18] 2025-11-20 20:53:24,867 | INFO     | --------------------------------------------------
[2025-11-20 21:54:18] 2025-11-20 20:53:24,868 | INFO     | 
[2025-11-20 21:54:18] 2025-11-20 20:53:24,868 | INFO     | executing command: ls -lF /var/lib/boinc/slots/5
[2025-11-20 21:54:18] 2025-11-20 20:53:25,287 | INFO     | time since job start (91976s) is within the limit (172800.0s)
[2025-11-20 21:54:18] 2025-11-20 20:53:25,576 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-20 21:54:18] 2025-11-20 20:53:25,576 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-20 21:54:18] 2025-11-20 20:53:25,576 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-20 21:54:18] 2025-11-20 20:53:25,576 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-20 21:54:18] 2025-11-20 20:53:25,576 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-20 21:54:18] 2025-11-20 20:53:25,577 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-20 21:54:18] 2025-11-20 20:53:25,577 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-20 21:54:18] 2025-11-20 20:53:25,577 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-20 21:54:18] 2025-11-20 20:53:25,577 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-20 21:54:18] 2025-11-20 20:53:25,577 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-20 21:54:18] 2025-11-20 20:53:25,577 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-20 21:54:18] 2025-11-20 20:53:25,577 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-20 21:54:18] 2025-11-20 20:53:25,577 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-20 21:54:18] 2025-11-20 20:53:25,577 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-20 21:54:18] 2025-11-20 20:53:25,578 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-20 21:54:18] 2025-11-20 20:53:25,578 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-20 21:54:18] 2025-11-20 20:53:25,578 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-20 21:54:18] 2025-11-20 20:53:25,578 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-20 21:54:18] 2025-11-20 20:53:25,578 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-20 21:54:18] 2025-11-20 20:53:25,578 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-20 21:54:18] 2025-11-20 20:53:25,578 | INFO     | job 6891571871 has completed (purged errors)
[2025-11-20 21:54:18] 2025-11-20 20:53:25,579 | INFO     | overall cleanup function is called
[2025-11-20 21:54:18] 2025-11-20 20:53:26,602 | INFO     | --- collectZombieJob: --- 10, [4976]
[2025-11-20 21:54:18] 2025-11-20 20:53:26,603 | INFO     | zombie collector waiting for pid 4976
[2025-11-20 21:54:18] 2025-11-20 20:53:26,603 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-20 21:54:18] 2025-11-20 20:53:26,603 | INFO     | collected zombie processes
[2025-11-20 21:54:18] 2025-11-20 20:53:26,603 | INFO     | will attempt to kill all subprocesses of pid=4976
[2025-11-20 21:54:18] 2025-11-20 20:53:26,741 | INFO     | process IDs to be killed: [4976] (in reverse order)
[2025-11-20 21:54:18] 2025-11-20 20:53:27,297 | WARNING  | found no corresponding commands to process id(s)
[2025-11-20 21:54:18] 2025-11-20 20:53:27,298 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-20 21:54:18] 2025-11-20 20:53:27,301 | INFO     | did not find any defunct processes belonging to 4976
[2025-11-20 21:54:18] 2025-11-20 20:53:27,308 | INFO     | did not find any defunct processes belonging to 4976
[2025-11-20 21:54:18] 2025-11-20 20:53:27,347 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-20 21:54:18] 2025-11-20 20:53:27,347 | INFO     | ready for new job
[2025-11-20 21:54:18] 2025-11-20 20:53:27,347 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-20 21:54:18] 2025-11-20 20:53:27,354 | INFO     | ***************************************
[2025-11-20 21:54:18] 2025-11-20 20:53:27,355 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-20 21:54:18] 2025-11-20 20:53:27,355 | INFO     | ***************************************
[2025-11-20 21:54:18] 2025-11-20 20:53:27,355 | INFO     | 
[2025-11-20 21:54:18] 2025-11-20 20:53:27,355 | INFO     | pilot is running in a VM
[2025-11-20 21:54:18] 2025-11-20 20:53:27,356 | INFO     | architecture information:
[2025-11-20 21:54:18] 2025-11-20 20:53:27,367 | INFO     | executing command: cat /etc/os-release
[2025-11-20 21:54:18] 2025-11-20 20:53:27,683 | INFO     | cat /etc/os-release:
[2025-11-20 21:54:18] NAME="CentOS Linux"
[2025-11-20 21:54:18] VERSION="7 (Core)"
[2025-11-20 21:54:18] ID="centos"
[2025-11-20 21:54:18] ID_LIKE="rhel fedora"
[2025-11-20 21:54:18] VERSION_ID="7"
[2025-11-20 21:54:18] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-20 21:54:18] ANSI_COLOR="0;31"
[2025-11-20 21:54:18] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-20 21:54:18] HOME_URL="https://www.centos.org/"
[2025-11-20 21:54:18] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-20 21:54:18] 
[2025-11-20 21:54:18] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-20 21:54:18] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-20 21:54:18] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-20 21:54:18] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-20 21:54:18] 
[2025-11-20 21:54:18] 2025-11-20 20:53:27,684 | INFO     | ***************************************
[2025-11-20 21:54:18] 2025-11-20 20:53:28,188 | INFO     | executing command: df -mP /var/lib/boinc/slots/5
[2025-11-20 21:54:18] 2025-11-20 20:53:28,484 | INFO     | sufficient remaining disk space (495033778176 B)
[2025-11-20 21:54:18] 2025-11-20 20:53:28,484 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-20 21:54:18] 2025-11-20 20:53:28,484 | INFO     | current server update state: UPDATING_FINAL
[2025-11-20 21:54:18] 2025-11-20 20:53:28,484 | INFO     | update_server=False
[2025-11-20 21:54:18] 2025-11-20 20:53:28,484 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-20 21:54:18] 2025-11-20 20:53:28,488 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-20 21:54:18] 2025-11-20 20:53:28,489 | INFO     | aborting loop
[2025-11-20 21:54:18] 2025-11-20 20:53:28,491 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-20 21:54:18] 2025-11-20 20:53:28,599 | INFO     | all data control threads have been joined
[2025-11-20 21:54:18] 2025-11-20 20:53:29,016 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-20 21:54:18] 2025-11-20 20:53:29,166 | INFO     | all job control threads have been joined
[2025-11-20 21:54:18] 2025-11-20 20:53:29,491 | INFO     | [job] retrieve thread has finished
[2025-11-20 21:54:18] 2025-11-20 20:53:29,495 | INFO     | [job] job monitor thread has finished
[2025-11-20 21:54:18] 2025-11-20 20:53:29,534 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-20 21:54:18] 2025-11-20 20:53:29,606 | INFO     | [data] control thread has finished
[2025-11-20 21:54:18] 2025-11-20 20:53:29,712 | INFO     | all payload control threads have been joined
[2025-11-20 21:54:18] 2025-11-20 20:53:29,879 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-20 21:54:18] 2025-11-20 20:53:30,172 | INFO     | [job] control thread has finished
[2025-11-20 21:54:18] 2025-11-20 20:53:30,234 | INFO     | [data] copytool_in thread has finished
[2025-11-20 21:54:18] 2025-11-20 20:53:30,247 | INFO     | [payload] failed_post thread has finished
[2025-11-20 21:54:18] 2025-11-20 20:53:30,458 | INFO     | [payload] validate_post thread has finished
[2025-11-20 21:54:18] 2025-11-20 20:53:30,497 | INFO     | [data] copytool_out thread has finished
[2025-11-20 21:54:18] 2025-11-20 20:53:30,622 | INFO     | [payload] validate_pre thread has finished
[2025-11-20 21:54:18] 2025-11-20 20:53:30,717 | INFO     | [payload] control thread has finished
[2025-11-20 21:54:18] 2025-11-20 20:53:30,742 | INFO     | [payload] execute_payloads thread has finished
[2025-11-20 21:54:18] 2025-11-20 20:53:30,813 | INFO     | [job] validate thread has finished
[2025-11-20 21:54:18] 2025-11-20 20:53:30,860 | INFO     | [job] create_data_payload thread has finished
[2025-11-20 21:54:18] 2025-11-20 20:53:30,885 | INFO     | [job] queue monitor thread has finished
[2025-11-20 21:54:18] 2025-11-20 20:53:33,025 | INFO     | [data] queue_monitor thread has finished
[2025-11-20 21:54:18] 2025-11-20 20:53:58,463 | INFO     | PID=26427 has CPU usage=2.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-20 21:54:18] 2025-11-20 20:53:58,463 | INFO     | .. there are 9 such processes running
[2025-11-20 21:54:18] 2025-11-20 20:53:58,463 | INFO     | found 0 job(s) in 20 queues
[2025-11-20 21:54:18] 2025-11-20 20:53:58,463 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-20 21:54:18] 2025-11-20 20:53:58,463 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-20 21:54:18] 2025-11-20 20:54:09,608 | INFO     | [monitor] cgroup control has ended
[2025-11-20 21:54:18] 2025-11-20 20:54:10,358 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140016454268736)>', '<ExcThread(monitor, started 140015782844160)>']
[2025-11-20 21:54:18] 2025-11-20 20:54:10,535 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-20 21:54:18] 2025-11-20 20:54:10,536 | INFO     | [monitor] control thread has ended
[2025-11-20 21:54:18] 2025-11-20 20:54:15,384 | INFO     | all workflow threads have been joined
[2025-11-20 21:54:18] 2025-11-20 20:54:15,385 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-20 21:54:18] 2025-11-20 20:54:15,385 | INFO     | traces error code: 0
[2025-11-20 21:54:18] 2025-11-20 20:54:15,385 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-20 21:54:18] 2025-11-20 20:54:15,639 [wrapper] ==== pilot stdout END ====
[2025-11-20 21:54:18] 2025-11-20 20:54:15,708 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-20 21:54:18] 2025-11-20 20:54:15,768 [wrapper] pilotpid: 26427
[2025-11-20 21:54:18] 2025-11-20 20:54:15,785 [wrapper] Pilot exit status: 0
[2025-11-20 21:54:18] 2025-11-20 20:54:16,031 [wrapper] pandaids: 6891571871
[2025-11-20 21:54:18] 2025-11-20 20:54:16,149 [wrapper] cleanup supervisor_pilot 27190 26428
[2025-11-20 21:54:18] 2025-11-20 20:54:16,167 [wrapper] Test setup, not cleaning
[2025-11-20 21:54:18] 2025-11-20 20:54:16,178 [wrapper] apfmon messages muted
[2025-11-20 21:54:18] 2025-11-20 20:54:16,187 [wrapper] ==== wrapper stdout END ====
[2025-11-20 21:54:18] 2025-11-20 20:54:16,233 [wrapper] ==== wrapper stderr END ====
[2025-11-20 21:54:18]  *** Error codes and diagnostics ***
[2025-11-20 21:54:18]     "exeErrorCode": 0,
[2025-11-20 21:54:18]     "exeErrorDiag": "",
[2025-11-20 21:54:18]     "pilotErrorCode": 0,
[2025-11-20 21:54:18]     "pilotErrorDiag": "",
[2025-11-20 21:54:18]  *** Listing of results directory ***
[2025-11-20 21:54:18] total 1344444
[2025-11-20 21:54:18] -rw-r--r--. 1 boinc boinc    576529 Nov 18 16:47 pilot3.tar.gz
[2025-11-20 21:54:18] -rwx------. 1 boinc boinc     36292 Nov 18 17:01 runpilot2-wrapper.sh
[2025-11-20 21:54:18] -rw-r--r--. 1 boinc boinc      5112 Nov 18 17:01 queuedata.json
[2025-11-20 21:54:18] -rw-r--r--. 1 boinc boinc       100 Nov 19 20:19 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-20 21:54:18] -rwxr-xr-x. 1 boinc boinc      7986 Nov 19 20:19 run_atlas
[2025-11-20 21:54:18] -rw-r--r--. 1 boinc boinc       105 Nov 19 20:19 job.xml
[2025-11-20 21:54:18] -rw-r--r--. 2 boinc boinc 408983747 Nov 19 20:19 EVNT.47493065._000308.pool.root.1
[2025-11-20 21:54:18] -rw-r--r--. 1 boinc boinc      6389 Nov 19 20:19 init_data.xml
[2025-11-20 21:54:18] -rw-r--r--. 2 boinc boinc     15120 Nov 19 20:19 start_atlas.sh
[2025-11-20 21:54:18] drwxrwx--x. 2 boinc boinc        68 Nov 19 20:19 shared
[2025-11-20 21:54:18] -rw-r--r--. 2 boinc boinc    590087 Nov 19 20:19 input.tar.gz
[2025-11-20 21:54:18] -rw-r--r--. 1 boinc boinc         0 Nov 19 20:19 boinc_lockfile
[2025-11-20 21:54:18] -rw-r--r--. 1 boinc boinc      2772 Nov 19 20:19 pandaJob.out
[2025-11-20 21:54:18] -rw-------. 1 boinc boinc    989434 Nov 19 20:20 agis_schedconf.cvmfs.json
[2025-11-20 21:54:18] drwx------. 5 boinc boinc      4096 Nov 19 20:20 pilot3
[2025-11-20 21:54:18] -rw-r--r--. 1 boinc boinc       533 Nov 20 21:32 boinc_task_state.xml
[2025-11-20 21:54:18] -rw-------. 1 boinc boinc 934205885 Nov 20 21:50 HITS.47493068._003080.pool.root.1
[2025-11-20 21:54:18] -rw-------. 1 boinc boinc      1034 Nov 20 21:51 memory_monitor_summary.json
[2025-11-20 21:54:18] -rw-------. 1 boinc boinc   1526164 Nov 20 21:51 agis_ddmendpoints.agis.ALL.json
[2025-11-20 21:54:18] -rw-------. 1 boinc boinc   2570741 Nov 20 21:51 log.47493068._003080.job.log.tgz.1
[2025-11-20 21:54:18] -rw-------. 1 boinc boinc        95 Nov 20 21:53 pilot_heartbeat.json
[2025-11-20 21:54:18] -rw-------. 1 boinc boinc      8639 Nov 20 21:53 heartbeat.json
[2025-11-20 21:54:18] -rw-r--r--. 1 boinc boinc      8192 Nov 20 21:54 boinc_mmap_file
[2025-11-20 21:54:18] -rw-r--r--. 1 boinc boinc        29 Nov 20 21:54 wrapper_checkpoint.txt
[2025-11-20 21:54:18] -rw-------. 1 boinc boinc      4884 Nov 20 21:54 pilotlog.txt
[2025-11-20 21:54:18] -rw-------. 1 boinc boinc  12238243 Nov 20 21:54 log.47493068._003080.job.log.1
[2025-11-20 21:54:18] -rw-------. 1 boinc boinc       353 Nov 20 21:54 output.list
[2025-11-20 21:54:18] -rw-r--r--. 1 boinc boinc       620 Nov 20 21:54 runtime_log
[2025-11-20 21:54:18] -rw-------. 1 boinc boinc  14827520 Nov 20 21:54 result.tar.gz
[2025-11-20 21:54:18] -rw-r--r--. 1 boinc boinc      8703 Nov 20 21:54 runtime_log.err
[2025-11-20 21:54:18] -rw-------. 1 boinc boinc       662 Nov 20 21:54 bgyNDmSKdf8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmDjFKDm3Bc7Bn.diag
[2025-11-20 21:54:18] -rw-r--r--. 1 boinc boinc     20860 Nov 20 21:54 stderr.txt
[2025-11-20 21:54:18] HITS file was successfully produced:
[2025-11-20 21:54:18] -rw-------. 1 boinc boinc 934205885 Nov 20 21:50 shared/HITS.pool.root.1
[2025-11-20 21:54:19]  *** Contents of shared directory: ***
[2025-11-20 21:54:19] total 1326788
[2025-11-20 21:54:19] -rw-r--r--. 2 boinc boinc 408983747 Nov 19 20:19 ATLAS.root_0
[2025-11-20 21:54:19] -rw-r--r--. 2 boinc boinc     15120 Nov 19 20:19 start_atlas.sh
[2025-11-20 21:54:19] -rw-r--r--. 2 boinc boinc    590087 Nov 19 20:19 input.tar.gz
[2025-11-20 21:54:19] -rw-------. 1 boinc boinc 934205885 Nov 20 21:50 HITS.pool.root.1
[2025-11-20 21:54:19] -rw-------. 1 boinc boinc  14827520 Nov 20 21:54 result.tar.gz
21:54:20 (22637): run_atlas exited; CPU time 341592.301076
21:54:20 (22637): called boinc_finish(0)

</stderr_txt>
]]>

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