Stderr output

<core_client_version>7.24.1</core_client_version>
<![CDATA[
<stderr_txt>
16:04:38 (599967): wrapper (7.7.26015): starting
16:04:38 (599967): wrapper: running run_atlas (--nthreads 2)
[2025-11-21 16:04:38] Arguments: --nthreads 2
[2025-11-21 16:04:38] Threads: 2
[2025-11-21 16:04:38] Checking for CVMFS
[2025-11-21 16:04:38] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-21 16:04:38] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-21 16:04:38] Running cvmfs_config stat atlas.cern.ch
[2025-11-21 16:04:40] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-21 16:04:40] 2.13.3.0 431847 1193 43788 153108 0 81 4399589 6144000 651 130560 0 446938 99.965 40250 143 http://s1swinburne-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch http://127.0.0.1:3128 1
[2025-11-21 16:04:40] CVMFS is ok
[2025-11-21 16:04:40] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-21 16:04:40] Checking for apptainer binary...
[2025-11-21 16:04:40] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-21 16:04:40] Running /usr/bin/apptainer --version
[2025-11-21 16:04:42] apptainer version 1.4.4
[2025-11-21 16:04:42] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-21 16:04:42] proxy
[2025-11-21 16:04:42] apptainer works
[2025-11-21 16:04:42] Set ATHENA_PROC_NUMBER=2
[2025-11-21 16:04:42] Set ATHENA_CORE_NUMBER=2
[2025-11-21 16:04:43] Starting ATLAS job with PandaID=6891555571
[2025-11-21 16:04:43] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc-client/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
20:24:55 (4846): wrapper (7.7.26015): starting
20:24:55 (4846): wrapper: running run_atlas (--nthreads 2)
[2025-11-21 20:24:56] Arguments: --nthreads 2
[2025-11-21 20:24:56] Threads: 2
[2025-11-21 20:24:56] This job has been restarted, cleaning up previous attempt
[2025-11-21 20:24:56] Checking for CVMFS
[2025-11-21 20:25:01] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-21 20:25:03] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-21 20:25:03] Running cvmfs_config stat atlas.cern.ch
[2025-11-21 20:25:03] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-21 20:25:03] 2.13.3.0 10229 0 25312 153115 3 1 4432513 6144001 0 130560 0 0 100.000 0 0 http://s1swinburne-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch http://127.0.0.1:3128 1
[2025-11-21 20:25:03] CVMFS is ok
[2025-11-21 20:25:03] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-21 20:25:03] Checking for apptainer binary...
[2025-11-21 20:25:03] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-21 20:25:03] Running /usr/bin/apptainer --version
[2025-11-21 20:25:05] apptainer version 1.4.4
[2025-11-21 20:25:05] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-21 20:25:07] proxy
[2025-11-21 20:25:07] apptainer works
[2025-11-21 20:25:07] Set ATHENA_PROC_NUMBER=2
[2025-11-21 20:25:07] Set ATHENA_CORE_NUMBER=2
[2025-11-21 20:25:07] Starting ATLAS job with PandaID=6891555571
[2025-11-21 20:25:07] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc-client/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-22 15:44:30]  *** The last 200 lines of the pilot log: ***
[2025-11-22 15:44:30] 2025-11-22 04:43:25,837 | INFO     | time since job start (69473s) is within the limit (172800.0s)
[2025-11-22 15:44:30] 2025-11-22 04:43:27,582 | INFO     | monitor loop #5232: job 0:6891555571 is in state 'finished'
[2025-11-22 15:44:30] 2025-11-22 04:43:27,582 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-22 15:44:30] 2025-11-22 04:43:27,843 | INFO     | time since job start (69475s) is within the limit (172800.0s)
[2025-11-22 15:44:30] 2025-11-22 04:43:28,540 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-22 15:44:30] 2025-11-22 04:43:28,541 | INFO     | found 4 cores (4 cores per socket, 1 socket) , CPU MHz: 3161.7419999999997
[2025-11-22 15:44:30] 2025-11-22 04:43:28,542 | INFO     | using path: /var/lib/boinc-client/slots/1/PanDA_Pilot-6891555571/memory_monitor_summary.json (trf name=prmon)
[2025-11-22 15:44:30] 2025-11-22 04:43:28,543 | INFO     | extracted standard info from prmon json
[2025-11-22 15:44:30] 2025-11-22 04:43:28,543 | INFO     | extracted standard memory fields from prmon json
[2025-11-22 15:44:30] 2025-11-22 04:43:28,543 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-22 15:44:30] 2025-11-22 04:43:28,551 | INFO     | fitting pss+swap vs Time
[2025-11-22 15:44:30] 2025-11-22 04:43:28,552 | INFO     | sum of square deviations: 458195753812.1474
[2025-11-22 15:44:30] 2025-11-22 04:43:28,566 | INFO     | sum of deviations: 472962874741.6881
[2025-11-22 15:44:30] 2025-11-22 04:43:28,567 | INFO     | mean x: 1763751865.0500438
[2025-11-22 15:44:30] 2025-11-22 04:43:28,567 | INFO     | mean y: 1959052.2686567164
[2025-11-22 15:44:30] 2025-11-22 04:43:28,567 | INFO     | intersect: -1818636502.1089299
[2025-11-22 15:44:30] 2025-11-22 04:43:28,567 | INFO     | chi2: 6.135580381934016
[2025-11-22 15:44:30] 2025-11-22 04:43:28,568 | INFO     | sum of square deviations: 452188058554.635
[2025-11-22 15:44:30] 2025-11-22 04:43:28,582 | INFO     | sum of deviations: 694990361574.3011
[2025-11-22 15:44:30] 2025-11-22 04:43:28,582 | INFO     | mean x: 1763751712.5502646
[2025-11-22 15:44:30] 2025-11-22 04:43:28,582 | INFO     | mean y: 1964687.1613756614
[2025-11-22 15:44:30] 2025-11-22 04:43:28,582 | INFO     | intersect: -2708833214.823683
[2025-11-22 15:44:30] 2025-11-22 04:43:28,583 | INFO     | chi2: 3.872469334493225
[2025-11-22 15:44:30] 2025-11-22 04:43:28,583 | INFO     | current chi2=3.872469334493225 (change=36.885036240490564 %)
[2025-11-22 15:44:30] 2025-11-22 04:43:28,583 | INFO     | sum of square deviations: 446233108472.12195
[2025-11-22 15:44:30] 2025-11-22 04:43:28,598 | INFO     | sum of deviations: 752693856223.9104
[2025-11-22 15:44:30] 2025-11-22 04:43:28,598 | INFO     | mean x: 1763751560.050487
[2025-11-22 15:44:30] 2025-11-22 04:43:28,598 | INFO     | mean y: 1966159.527900797
[2025-11-22 15:44:30] 2025-11-22 04:43:28,598 | INFO     | intersect: -2973081944.143406
[2025-11-22 15:44:30] 2025-11-22 04:43:28,599 | INFO     | chi2: 3.1952212183007447
[2025-11-22 15:44:30] 2025-11-22 04:43:28,599 | INFO     | current chi2=3.1952212183007447 (change=17.48879223290503 %)
[2025-11-22 15:44:30] 2025-11-22 04:43:28,599 | INFO     | right removable region: 1128
[2025-11-22 15:44:30] 2025-11-22 04:43:28,600 | INFO     | sum of square deviations: 452188023784.635
[2025-11-22 15:44:30] 2025-11-22 04:43:28,614 | INFO     | sum of deviations: 256652865552.13733
[2025-11-22 15:44:30] 2025-11-22 04:43:28,614 | INFO     | mean x: 1763752017.5502646
[2025-11-22 15:44:30] 2025-11-22 04:43:28,614 | INFO     | mean y: 1964540.041446208
[2025-11-22 15:44:30] 2025-11-22 04:43:28,615 | INFO     | intersect: -999105779.4220221
[2025-11-22 15:44:30] 2025-11-22 04:43:28,615 | INFO     | chi2: 3.971859741278216
[2025-11-22 15:44:30] 2025-11-22 04:43:28,615 | INFO     | current chi2=3.971859741278216 (change=35.26513395581603 %)
[2025-11-22 15:44:30] 2025-11-22 04:43:28,616 | INFO     | sum of square deviations: 446233038932.12195
[2025-11-22 15:44:30] 2025-11-22 04:43:28,631 | INFO     | sum of deviations: 107340947083.6066
[2025-11-22 15:44:30] 2025-11-22 04:43:28,631 | INFO     | mean x: 1763752170.050487
[2025-11-22 15:44:30] 2025-11-22 04:43:28,631 | INFO     | mean y: 1968362.5332152348
[2025-11-22 15:44:30] 2025-11-22 04:43:28,631 | INFO     | intersect: -422300599.7270718
[2025-11-22 15:44:30] 2025-11-22 04:43:28,632 | INFO     | chi2: 3.009737357413698
[2025-11-22 15:44:30] 2025-11-22 04:43:28,632 | INFO     | current chi2=3.009737357413698 (change=24.223473298049782 %)
[2025-11-22 15:44:30] 2025-11-22 04:43:28,632 | INFO     | left removable region: 20
[2025-11-22 15:44:30] 2025-11-22 04:43:28,632 | INFO     | sum of square deviations: 421792907886.06805
[2025-11-22 15:44:30] 2025-11-22 04:43:28,646 | INFO     | sum of deviations: 370565547635.5105
[2025-11-22 15:44:30] 2025-11-22 04:43:28,646 | INFO     | mean x: 1763752139.551444
[2025-11-22 15:44:30] 2025-11-22 04:43:28,646 | INFO     | mean y: 1976039.868231047
[2025-11-22 15:44:30] 2025-11-22 04:43:28,646 | INFO     | intersect: -1547565844.9439397
[2025-11-22 15:44:30] 2025-11-22 04:43:28,646 | INFO     | chi2: 0.048431379254853635
[2025-11-22 15:44:30] 2025-11-22 04:43:28,646 | INFO     | current memory leak: 0.88 B/s (using 1108 data points, chi2=0.05)
[2025-11-22 15:44:30] 2025-11-22 04:43:28,647 | INFO     | could have reported an average CPU frequency of 3011 MHz (42 samples)
[2025-11-22 15:44:30] 2025-11-22 04:43:28,647 | INFO     | ..............................
[2025-11-22 15:44:30] 2025-11-22 04:43:28,647 | INFO     | . Timing measurements:
[2025-11-22 15:44:30] 2025-11-22 04:43:28,647 | INFO     | . get job = 0 s
[2025-11-22 15:44:30] 2025-11-22 04:43:28,647 | INFO     | . initial setup = 7 s
[2025-11-22 15:44:30] 2025-11-22 04:43:28,647 | INFO     | . payload setup = 6 s
[2025-11-22 15:44:30] 2025-11-22 04:43:28,647 | INFO     | . stage-in = 0 s
[2025-11-22 15:44:30] 2025-11-22 04:43:28,647 | INFO     | . payload execution = 69441 s
[2025-11-22 15:44:30] 2025-11-22 04:43:28,647 | INFO     | . stage-out = 5 s
[2025-11-22 15:44:30] 2025-11-22 04:43:28,647 | INFO     | . log creation = 0 s
[2025-11-22 15:44:30] 2025-11-22 04:43:28,647 | INFO     | ..............................
[2025-11-22 15:44:30] 2025-11-22 04:43:28,800 | INFO     | 
[2025-11-22 15:44:30] 2025-11-22 04:43:28,801 | INFO     | job summary report
[2025-11-22 15:44:30] 2025-11-22 04:43:28,801 | INFO     | --------------------------------------------------
[2025-11-22 15:44:30] 2025-11-22 04:43:28,801 | INFO     | PanDA job id: 6891555571
[2025-11-22 15:44:30] 2025-11-22 04:43:28,801 | INFO     | task id: 47493068
[2025-11-22 15:44:30] 2025-11-22 04:43:28,801 | INFO     | errors: (none)
[2025-11-22 15:44:30] 2025-11-22 04:43:28,801 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-22 15:44:30] 2025-11-22 04:43:28,801 | INFO     | pilot state: finished 
[2025-11-22 15:44:30] 2025-11-22 04:43:28,801 | INFO     | transexitcode: 0
[2025-11-22 15:44:30] 2025-11-22 04:43:28,801 | INFO     | exeerrorcode: 0
[2025-11-22 15:44:30] 2025-11-22 04:43:28,801 | INFO     | exeerrordiag: 
[2025-11-22 15:44:30] 2025-11-22 04:43:28,801 | INFO     | exitcode: 0
[2025-11-22 15:44:30] 2025-11-22 04:43:28,801 | INFO     | exitmsg: OK
[2025-11-22 15:44:30] 2025-11-22 04:43:28,801 | INFO     | cpuconsumptiontime: 137498 s
[2025-11-22 15:44:30] 2025-11-22 04:43:28,801 | INFO     | nevents: 1000
[2025-11-22 15:44:30] 2025-11-22 04:43:28,801 | INFO     | neventsw: 0
[2025-11-22 15:44:30] 2025-11-22 04:43:28,801 | INFO     | pid: 35091
[2025-11-22 15:44:30] 2025-11-22 04:43:28,801 | INFO     | pgrp: 35091
[2025-11-22 15:44:30] 2025-11-22 04:43:28,801 | INFO     | corecount: 2
[2025-11-22 15:44:30] 2025-11-22 04:43:28,801 | INFO     | event service: False
[2025-11-22 15:44:30] 2025-11-22 04:43:28,801 | INFO     | sizes: {0: 2298628, 1: 2298827, 3: 2299089, 11: 2299117, 69451: 2357524, 69457: 2366532, 69459: 2366716, 69462: 2366962}
[2025-11-22 15:44:30] 2025-11-22 04:43:28,801 | INFO     | --------------------------------------------------
[2025-11-22 15:44:30] 2025-11-22 04:43:28,801 | INFO     | 
[2025-11-22 15:44:30] 2025-11-22 04:43:28,801 | INFO     | executing command: ls -lF /var/lib/boinc-client/slots/1
[2025-11-22 15:44:30] 2025-11-22 04:43:28,814 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-22 15:44:30] 2025-11-22 04:43:28,815 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-22 15:44:30] 2025-11-22 04:43:28,815 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-22 15:44:30] 2025-11-22 04:43:28,815 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-22 15:44:30] 2025-11-22 04:43:28,815 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-22 15:44:30] 2025-11-22 04:43:28,815 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-22 15:44:30] 2025-11-22 04:43:28,815 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-22 15:44:30] 2025-11-22 04:43:28,815 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-22 15:44:30] 2025-11-22 04:43:28,815 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-22 15:44:30] 2025-11-22 04:43:28,815 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-22 15:44:30] 2025-11-22 04:43:28,815 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-22 15:44:30] 2025-11-22 04:43:28,815 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-22 15:44:30] 2025-11-22 04:43:28,815 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-22 15:44:30] 2025-11-22 04:43:28,815 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-22 15:44:30] 2025-11-22 04:43:28,815 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-22 15:44:30] 2025-11-22 04:43:28,815 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-22 15:44:30] 2025-11-22 04:43:28,815 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-22 15:44:30] 2025-11-22 04:43:28,815 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-22 15:44:30] 2025-11-22 04:43:28,815 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-22 15:44:30] 2025-11-22 04:43:28,816 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-22 15:44:30] 2025-11-22 04:43:28,816 | INFO     | job 6891555571 has completed (purged errors)
[2025-11-22 15:44:30] 2025-11-22 04:43:28,816 | INFO     | overall cleanup function is called
[2025-11-22 15:44:30] 2025-11-22 04:43:29,824 | INFO     | --- collectZombieJob: --- 10, [35091]
[2025-11-22 15:44:30] 2025-11-22 04:43:29,824 | INFO     | zombie collector waiting for pid 35091
[2025-11-22 15:44:30] 2025-11-22 04:43:29,824 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-22 15:44:30] 2025-11-22 04:43:29,824 | INFO     | collected zombie processes
[2025-11-22 15:44:30] 2025-11-22 04:43:29,824 | INFO     | will attempt to kill all subprocesses of pid=35091
[2025-11-22 15:44:30] 2025-11-22 04:43:29,856 | INFO     | process IDs to be killed: [35091] (in reverse order)
[2025-11-22 15:44:30] 2025-11-22 04:43:29,886 | WARNING  | found no corresponding commands to process id(s)
[2025-11-22 15:44:30] 2025-11-22 04:43:29,887 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-22 15:44:30] 2025-11-22 04:43:29,888 | INFO     | did not find any defunct processes belonging to 35091
[2025-11-22 15:44:30] 2025-11-22 04:43:29,889 | INFO     | did not find any defunct processes belonging to 35091
[2025-11-22 15:44:30] 2025-11-22 04:43:29,890 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-22 15:44:30] 2025-11-22 04:43:29,890 | INFO     | ready for new job
[2025-11-22 15:44:30] 2025-11-22 04:43:29,890 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-22 15:44:30] 2025-11-22 04:43:29,893 | INFO     | ***************************************
[2025-11-22 15:44:30] 2025-11-22 04:43:29,893 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-22 15:44:30] 2025-11-22 04:43:29,893 | INFO     | ***************************************
[2025-11-22 15:44:30] 2025-11-22 04:43:29,893 | INFO     | 
[2025-11-22 15:44:30] 2025-11-22 04:43:29,893 | INFO     | architecture information:
[2025-11-22 15:44:30] 2025-11-22 04:43:29,894 | INFO     | executing command: cat /etc/os-release
[2025-11-22 15:44:30] 2025-11-22 04:43:29,917 | INFO     | cat /etc/os-release:
[2025-11-22 15:44:30] NAME="CentOS Linux"
[2025-11-22 15:44:30] VERSION="7 (Core)"
[2025-11-22 15:44:30] ID="centos"
[2025-11-22 15:44:30] ID_LIKE="rhel fedora"
[2025-11-22 15:44:30] VERSION_ID="7"
[2025-11-22 15:44:30] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-22 15:44:30] ANSI_COLOR="0;31"
[2025-11-22 15:44:30] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-22 15:44:30] HOME_URL="https://www.centos.org/"
[2025-11-22 15:44:30] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-22 15:44:30] 
[2025-11-22 15:44:30] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-22 15:44:30] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-22 15:44:30] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-22 15:44:30] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-22 15:44:30] 
[2025-11-22 15:44:30] 2025-11-22 04:43:29,918 | INFO     | ***************************************
[2025-11-22 15:44:30] 2025-11-22 04:43:30,420 | INFO     | executing command: df -mP /var/lib/boinc-client/slots/1
[2025-11-22 15:44:30] 2025-11-22 04:43:30,430 | INFO     | sufficient remaining disk space (1832779776000 B)
[2025-11-22 15:44:30] 2025-11-22 04:43:30,430 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-22 15:44:30] 2025-11-22 04:43:30,431 | INFO     | current server update state: UPDATING_FINAL
[2025-11-22 15:44:30] 2025-11-22 04:43:30,431 | INFO     | update_server=False
[2025-11-22 15:44:30] 2025-11-22 04:43:30,431 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-22 15:44:30] 2025-11-22 04:43:30,431 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-22 15:44:30] 2025-11-22 04:43:30,832 | INFO     | all job control threads have been joined
[2025-11-22 15:44:30] 2025-11-22 04:43:30,887 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-22 15:44:30] 2025-11-22 04:43:31,096 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-22 15:44:30] 2025-11-22 04:43:31,096 | INFO     | aborting loop
[2025-11-22 15:44:30] 2025-11-22 04:43:31,201 | INFO     | all data control threads have been joined
[2025-11-22 15:44:30] 2025-11-22 04:43:31,436 | INFO     | [job] retrieve thread has finished
[2025-11-22 15:44:30] 2025-11-22 04:43:31,436 | INFO     | [job] queue monitor thread has finished
[2025-11-22 15:44:30] 2025-11-22 04:43:31,468 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-22 15:44:30] 2025-11-22 04:43:31,523 | INFO     | all payload control threads have been joined
[2025-11-22 15:44:30] 2025-11-22 04:43:31,536 | INFO     | [payload] execute_payloads thread has finished
[2025-11-22 15:44:30] 2025-11-22 04:43:31,697 | INFO     | [payload] validate_pre thread has finished
[2025-11-22 15:44:30] 2025-11-22 04:43:31,776 | INFO     | [payload] failed_post thread has finished
[2025-11-22 15:44:30] 2025-11-22 04:43:31,838 | INFO     | [job] control thread has finished
[2025-11-22 15:44:30] 2025-11-22 04:43:31,899 | INFO     | [data] copytool_in thread has finished
[2025-11-22 15:44:30] 2025-11-22 04:43:32,101 | INFO     | [job] job monitor thread has finished
[2025-11-22 15:44:30] 2025-11-22 04:43:32,206 | INFO     | [data] control thread has finished
[2025-11-22 15:44:30] 2025-11-22 04:43:32,469 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-22 15:44:30] 2025-11-22 04:43:32,510 | INFO     | [payload] validate_post thread has finished
[2025-11-22 15:44:30] 2025-11-22 04:43:32,528 | INFO     | [payload] control thread has finished
[2025-11-22 15:44:30] 2025-11-22 04:43:32,680 | INFO     | [job] validate thread has finished
[2025-11-22 15:44:30] 2025-11-22 04:43:32,725 | INFO     | [job] create_data_payload thread has finished
[2025-11-22 15:44:30] 2025-11-22 04:43:33,471 | INFO     | [data] copytool_out thread has finished
[2025-11-22 15:44:30] 2025-11-22 04:43:34,894 | INFO     | [data] queue_monitor thread has finished
[2025-11-22 15:44:30] 2025-11-22 04:44:00,961 | INFO     | PID=27251 has CPU usage=1.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-22 15:44:30] 2025-11-22 04:44:00,961 | INFO     | found 0 job(s) in 20 queues
[2025-11-22 15:44:30] 2025-11-22 04:44:00,961 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-22 15:44:30] 2025-11-22 04:44:00,961 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-22 15:44:30] 2025-11-22 04:44:23,557 | INFO     | [monitor] cgroup control has ended
[2025-11-22 15:44:30] 2025-11-22 04:44:25,267 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 129898266629952)>', '<ExcThread(monitor, started 129897192224512)>']
[2025-11-22 15:44:30] 2025-11-22 04:44:26,086 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-22 15:44:30] 2025-11-22 04:44:26,086 | INFO     | [monitor] control thread has ended
[2025-11-22 15:44:30] 2025-11-22 04:44:30,283 | INFO     | all workflow threads have been joined
[2025-11-22 15:44:30] 2025-11-22 04:44:30,283 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-22 15:44:30] 2025-11-22 04:44:30,283 | INFO     | traces error code: 0
[2025-11-22 15:44:30] 2025-11-22 04:44:30,283 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-22 15:44:30] 2025-11-22 04:44:30,643 [wrapper] ==== pilot stdout END ====
[2025-11-22 15:44:30] 2025-11-22 04:44:30,645 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-22 15:44:30] 2025-11-22 04:44:30,647 [wrapper] pilotpid: 27251
[2025-11-22 15:44:30] 2025-11-22 04:44:30,649 [wrapper] Pilot exit status: 0
[2025-11-22 15:44:30] 2025-11-22 04:44:30,692 [wrapper] pandaids: 6891555571 6891555571
[2025-11-22 15:44:30] 2025-11-22 04:44:30,714 [wrapper] cleanup supervisor_pilot  178270 27253
[2025-11-22 15:44:30] 2025-11-22 04:44:30,716 [wrapper] Test setup, not cleaning
[2025-11-22 15:44:30] 2025-11-22 04:44:30,718 [wrapper] apfmon messages muted
[2025-11-22 15:44:30] 2025-11-22 04:44:30,720 [wrapper] ==== wrapper stdout END ====
[2025-11-22 15:44:30] 2025-11-22 04:44:30,722 [wrapper] ==== wrapper stderr END ====
[2025-11-22 15:44:30]  *** Error codes and diagnostics ***
[2025-11-22 15:44:30]     "exeErrorCode": 0,
[2025-11-22 15:44:30]     "exeErrorDiag": "",
[2025-11-22 15:44:30]     "pilotErrorCode": 0,
[2025-11-22 15:44:30]     "pilotErrorDiag": "",
[2025-11-22 15:44:30]  *** Listing of results directory ***
[2025-11-22 15:44:30] total 1723656
[2025-11-22 15:44:30] drwx------ 5 boinc boinc      4096 Nov  6 04:16 pilot3
[2025-11-22 15:44:30] -rw-r--r-- 1 boinc boinc    576529 Nov 19 02:15 pilot3.tar.gz
[2025-11-22 15:44:30] -rwx------ 1 boinc boinc     36292 Nov 19 02:20 runpilot2-wrapper.sh
[2025-11-22 15:44:30] -rw-r--r-- 1 boinc boinc      5112 Nov 19 02:20 queuedata.json
[2025-11-22 15:44:30] -rw-r--r-- 1 boinc boinc       100 Nov 21 16:04 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-22 15:44:30] -rwxr-xr-x 1 boinc boinc      7986 Nov 21 16:04 run_atlas
[2025-11-22 15:44:30] -rw-r--r-- 1 boinc boinc       105 Nov 21 16:04 job.xml
[2025-11-22 15:44:30] -rw-r--r-- 3 boinc boinc 411244302 Nov 21 16:04 EVNT.47493065._000035.pool.root.1
[2025-11-22 15:44:30] -rw-r--r-- 3 boinc boinc 411244302 Nov 21 16:04 ATLAS.root_0
[2025-11-22 15:44:30] drwxrwx--x 2 boinc boinc      4096 Nov 21 16:04 shared
[2025-11-22 15:44:30] -rw-r--r-- 2 boinc boinc    590092 Nov 21 16:04 input.tar.gz
[2025-11-22 15:44:30] -rw-r--r-- 2 boinc boinc     15120 Nov 21 16:04 start_atlas.sh
[2025-11-22 15:44:30] -rw-r--r-- 1 boinc boinc         0 Nov 21 16:04 boinc_lockfile
[2025-11-22 15:44:30] -rw-r--r-- 1 boinc boinc      2771 Nov 21 20:25 pandaJob.out
[2025-11-22 15:44:30] -rw------- 1 boinc boinc    989817 Nov 21 20:25 agis_schedconf.cvmfs.json
[2025-11-22 15:44:30] -rw-r--r-- 1 boinc boinc      9352 Nov 21 21:41 init_data.xml
[2025-11-22 15:44:30] -rw-r--r-- 1 boinc boinc       532 Nov 22 15:36 boinc_task_state.xml
[2025-11-22 15:44:30] -rw------- 1 boinc boinc 916128027 Nov 22 15:42 HITS.47493068._000342.pool.root.1
[2025-11-22 15:44:30] -rw------- 1 boinc boinc        96 Nov 22 15:43 pilot_heartbeat.json
[2025-11-22 15:44:30] -rw------- 1 boinc boinc      1046 Nov 22 15:43 memory_monitor_summary.json
[2025-11-22 15:44:30] -rw------- 1 boinc boinc   1526164 Nov 22 15:43 agis_ddmendpoints.agis.ALL.json
[2025-11-22 15:44:30] -rw------- 1 boinc boinc   1536696 Nov 22 15:43 log.47493068._000342.job.log.tgz.1
[2025-11-22 15:44:30] -rw------- 1 boinc boinc      8580 Nov 22 15:43 heartbeat.json
[2025-11-22 15:44:30] -rw-r--r-- 1 boinc boinc      8192 Nov 22 15:44 boinc_mmap_file
[2025-11-22 15:44:30] -rw-r--r-- 1 boinc boinc        29 Nov 22 15:44 wrapper_checkpoint.txt
[2025-11-22 15:44:30] -rw------- 1 boinc boinc      4755 Nov 22 15:44 pilotlog.txt
[2025-11-22 15:44:30] -rw------- 1 boinc boinc   9695650 Nov 22 15:44 log.47493068._000342.job.log.1
[2025-11-22 15:44:30] -rw------- 1 boinc boinc       353 Nov 22 15:44 output.list
[2025-11-22 15:44:30] -rw-r--r-- 1 boinc boinc       620 Nov 22 15:44 runtime_log
[2025-11-22 15:44:30] -rw------- 1 boinc boinc  11253760 Nov 22 15:44 result.tar.gz
[2025-11-22 15:44:30] -rw------- 1 boinc boinc       779 Nov 22 15:44 RWdKDmOgcf8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmSGFKDmbM6aOo.diag
[2025-11-22 15:44:30] -rw-r--r-- 1 boinc boinc      8837 Nov 22 15:44 runtime_log.err
[2025-11-22 15:44:30] -rw-r--r-- 1 boinc boinc     22851 Nov 22 15:44 stderr.txt
[2025-11-22 15:44:30] HITS file was successfully produced:
[2025-11-22 15:44:30] -rw------- 1 boinc boinc 916128027 Nov 22 15:42 shared/HITS.pool.root.1
[2025-11-22 15:44:30]  *** Contents of shared directory: ***
[2025-11-22 15:44:30] total 1307864
[2025-11-22 15:44:30] -rw-r--r-- 3 boinc boinc 411244302 Nov 21 16:04 ATLAS.root_0
[2025-11-22 15:44:30] -rw-r--r-- 2 boinc boinc    590092 Nov 21 16:04 input.tar.gz
[2025-11-22 15:44:30] -rw-r--r-- 2 boinc boinc     15120 Nov 21 16:04 start_atlas.sh
[2025-11-22 15:44:30] -rw------- 1 boinc boinc 916128027 Nov 22 15:42 HITS.pool.root.1
[2025-11-22 15:44:30] -rw------- 1 boinc boinc  11253760 Nov 22 15:44 result.tar.gz
15:44:32 (4846): run_atlas exited; CPU time 137406.751131
15:44:32 (4846): called boinc_finish(0)

</stderr_txt>
]]>

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