Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
21:45:44 (25470): wrapper (7.7.26015): starting
21:45:44 (25470): wrapper: running run_atlas (--nthreads 8)
[2025-11-20 21:45:44] Arguments: --nthreads 8
[2025-11-20 21:45:44] Threads: 8
[2025-11-20 21:45:44] Checking for CVMFS
[2025-11-20 21:45:45] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-20 21:45:46] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-20 21:45:46] Running cvmfs_config stat atlas.cern.ch
[2025-11-20 21:45:47] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-20 21:45:47] 2.11.2.0 8404 277232 143700 153088 0 85 17760152 25165824 4632 130560 3 140060026 99.889 77881319 3721 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-20 21:45:47] CVMFS is ok
[2025-11-20 21:45:47] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-20 21:45:47] Checking for apptainer binary...
[2025-11-20 21:45:47] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-20 21:45:47] Running /usr/bin/apptainer --version
[2025-11-20 21:45:47] apptainer version 1.3.2-1.el7
[2025-11-20 21:45:47] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-20 21:45:59] cg-vwn309.simple-grid.lan
[2025-11-20 21:45:59] apptainer works
[2025-11-20 21:45:59] Set ATHENA_PROC_NUMBER=8
[2025-11-20 21:45:59] Set ATHENA_CORE_NUMBER=8
[2025-11-20 21:45:59] Starting ATLAS job with PandaID=6891571307
[2025-11-20 21:45:59] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/13 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-21 23:55:51]  *** The last 200 lines of the pilot log: ***
[2025-11-21 23:55:51] 2025-11-21 22:54:44,979 | INFO     | monitor loop #6310: job 0:6891571307 is in state 'finished'
[2025-11-21 23:55:51] 2025-11-21 22:54:44,980 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-21 23:55:51] 2025-11-21 22:54:45,832 | INFO     | time since job start (93886s) is within the limit (172800.0s)
[2025-11-21 23:55:51] 2025-11-21 22:54:47,486 | INFO     | monitor loop #6311: job 0:6891571307 is in state 'finished'
[2025-11-21 23:55:51] 2025-11-21 22:54:47,487 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-21 23:55:51] 2025-11-21 22:54:47,841 | INFO     | time since job start (93888s) is within the limit (172800.0s)
[2025-11-21 23:55:51] 2025-11-21 22:54:49,852 | INFO     | time since job start (93890s) is within the limit (172800.0s)
[2025-11-21 23:55:51] 2025-11-21 22:54:50,001 | INFO     | monitor loop #6312: job 0:6891571307 is in state 'finished'
[2025-11-21 23:55:51] 2025-11-21 22:54:50,001 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-21 23:55:51] 2025-11-21 22:54:51,859 | INFO     | time since job start (93892s) is within the limit (172800.0s)
[2025-11-21 23:55:51] 2025-11-21 22:54:52,506 | INFO     | monitor loop #6313: job 0:6891571307 is in state 'finished'
[2025-11-21 23:55:51] 2025-11-21 22:54:52,507 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-21 23:55:51] 2025-11-21 22:54:53,865 | INFO     | time since job start (93894s) is within the limit (172800.0s)
[2025-11-21 23:55:51] 2025-11-21 22:54:55,016 | INFO     | monitor loop #6314: job 0:6891571307 is in state 'finished'
[2025-11-21 23:55:51] 2025-11-21 22:54:55,016 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-21 23:55:51] 2025-11-21 22:54:55,872 | INFO     | time since job start (93896s) is within the limit (172800.0s)
[2025-11-21 23:55:51] 2025-11-21 22:54:56,441 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-21 23:55:51] 2025-11-21 22:54:56,442 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-11-21 23:55:51] 2025-11-21 22:54:56,444 | INFO     | using path: /var/lib/boinc/slots/13/PanDA_Pilot-6891571307/memory_monitor_summary.json (trf name=prmon)
[2025-11-21 23:55:51] 2025-11-21 22:54:56,445 | INFO     | extracted standard info from prmon json
[2025-11-21 23:55:51] 2025-11-21 22:54:56,445 | INFO     | extracted standard memory fields from prmon json
[2025-11-21 23:55:51] 2025-11-21 22:54:56,445 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-21 23:55:51] 2025-11-21 22:54:56,475 | INFO     | fitting pss+swap vs Time
[2025-11-21 23:55:51] 2025-11-21 22:54:56,478 | INFO     | sum of square deviations: 1114947642488.39
[2025-11-21 23:55:51] 2025-11-21 22:54:56,552 | INFO     | sum of deviations: 1880129813047.6143
[2025-11-21 23:55:51] 2025-11-21 22:54:56,553 | INFO     | mean x: 1763718843.9092689
[2025-11-21 23:55:51] 2025-11-21 22:54:56,553 | INFO     | mean y: 2864417.428851175
[2025-11-21 23:55:51] 2025-11-21 22:54:56,553 | INFO     | intersect: -2971284550.559319
[2025-11-21 23:55:51] 2025-11-21 22:54:56,555 | INFO     | chi2: 17.76517955515393
[2025-11-21 23:55:51] 2025-11-21 22:54:56,558 | INFO     | sum of square deviations: 1104067296958.4253
[2025-11-21 23:55:51] 2025-11-21 22:54:56,637 | INFO     | sum of deviations: 2383470554241.7437
[2025-11-21 23:55:51] 2025-11-21 22:54:56,637 | INFO     | mean x: 1763718691.4138834
[2025-11-21 23:55:51] 2025-11-21 22:54:56,637 | INFO     | mean y: 2871471.1349050426
[2025-11-21 23:55:51] 2025-11-21 22:54:56,637 | INFO     | intersect: -3804660532.1511855
[2025-11-21 23:55:51] 2025-11-21 22:54:56,639 | INFO     | chi2: 14.591674312414172
[2025-11-21 23:55:51] 2025-11-21 22:54:56,639 | INFO     | current chi2=14.591674312414172 (change=17.863626049414627 %)
[2025-11-21 23:55:51] 2025-11-21 22:54:56,639 | INFO     | right removable region: 1526
[2025-11-21 23:55:51] 2025-11-21 22:54:56,642 | INFO     | sum of square deviations: 1104065979968.4255
[2025-11-21 23:55:51] 2025-11-21 22:54:56,725 | INFO     | sum of deviations: 1426925481266.0503
[2025-11-21 23:55:51] 2025-11-21 22:54:56,726 | INFO     | mean x: 1763718996.4138834
[2025-11-21 23:55:51] 2025-11-21 22:54:56,726 | INFO     | mean y: 2870766.0916830385
[2025-11-21 23:55:51] 2025-11-21 22:54:56,726 | INFO     | intersect: -2276608561.6274166
[2025-11-21 23:55:51] 2025-11-21 22:54:56,728 | INFO     | chi2: 15.45505057234964
[2025-11-21 23:55:51] 2025-11-21 22:54:56,729 | INFO     | current chi2=15.45505057234964 (change=13.003690593907285 %)
[2025-11-21 23:55:51] 2025-11-21 22:54:56,729 | INFO     | left removable region: 10
[2025-11-21 23:55:51] 2025-11-21 22:54:56,731 | INFO     | sum of square deviations: 1080378138851.3433
[2025-11-21 23:55:51] 2025-11-21 22:54:56,793 | INFO     | sum of deviations: 1930568514915.291
[2025-11-21 23:55:51] 2025-11-21 22:54:56,793 | INFO     | mean x: 1763718965.9201846
[2025-11-21 23:55:51] 2025-11-21 22:54:56,793 | INFO     | mean y: 2880951.1015831134
[2025-11-21 23:55:51] 2025-11-21 22:54:56,794 | INFO     | intersect: -3148775105.5311756
[2025-11-21 23:55:51] 2025-11-21 22:54:56,795 | INFO     | chi2: 11.468346628698736
[2025-11-21 23:55:51] 2025-11-21 22:54:56,796 | INFO     | current memory leak: 1.79 B/s (using 1516 data points, chi2=11.47)
[2025-11-21 23:55:51] 2025-11-21 22:54:56,798 | INFO     | could have reported an average CPU frequency of 1999 MHz (52 samples)
[2025-11-21 23:55:51] 2025-11-21 22:54:56,799 | INFO     | ..............................
[2025-11-21 23:55:51] 2025-11-21 22:54:56,799 | INFO     | . Timing measurements:
[2025-11-21 23:55:51] 2025-11-21 22:54:56,799 | INFO     | . get job = 0 s
[2025-11-21 23:55:51] 2025-11-21 22:54:56,799 | INFO     | . initial setup = 5 s
[2025-11-21 23:55:51] 2025-11-21 22:54:56,799 | INFO     | . payload setup = 131 s
[2025-11-21 23:55:51] 2025-11-21 22:54:56,799 | INFO     | . stage-in = 0 s
[2025-11-21 23:55:51] 2025-11-21 22:54:56,799 | INFO     | . payload execution = 93478 s
[2025-11-21 23:55:51] 2025-11-21 22:54:56,799 | INFO     | . stage-out = 6 s
[2025-11-21 23:55:51] 2025-11-21 22:54:56,799 | INFO     | . log creation = 2 s
[2025-11-21 23:55:51] 2025-11-21 22:54:56,800 | INFO     | ..............................
[2025-11-21 23:55:51] 2025-11-21 22:54:56,926 | INFO     | 
[2025-11-21 23:55:51] 2025-11-21 22:54:56,926 | INFO     | job summary report
[2025-11-21 23:55:51] 2025-11-21 22:54:56,926 | INFO     | --------------------------------------------------
[2025-11-21 23:55:51] 2025-11-21 22:54:56,926 | INFO     | PanDA job id: 6891571307
[2025-11-21 23:55:51] 2025-11-21 22:54:56,926 | INFO     | task id: 47493068
[2025-11-21 23:55:51] 2025-11-21 22:54:56,927 | INFO     | errors: (none)
[2025-11-21 23:55:51] 2025-11-21 22:54:56,927 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-21 23:55:51] 2025-11-21 22:54:56,927 | INFO     | pilot state: finished 
[2025-11-21 23:55:51] 2025-11-21 22:54:56,927 | INFO     | transexitcode: 0
[2025-11-21 23:55:51] 2025-11-21 22:54:56,927 | INFO     | exeerrorcode: 0
[2025-11-21 23:55:51] 2025-11-21 22:54:56,927 | INFO     | exeerrordiag: 
[2025-11-21 23:55:51] 2025-11-21 22:54:56,927 | INFO     | exitcode: 0
[2025-11-21 23:55:51] 2025-11-21 22:54:56,927 | INFO     | exitmsg: OK
[2025-11-21 23:55:51] 2025-11-21 22:54:56,927 | INFO     | cpuconsumptiontime: 341313 s
[2025-11-21 23:55:51] 2025-11-21 22:54:56,928 | INFO     | nevents: 1000
[2025-11-21 23:55:51] 2025-11-21 22:54:56,928 | INFO     | neventsw: 0
[2025-11-21 23:55:51] 2025-11-21 22:54:56,928 | INFO     | pid: 3444
[2025-11-21 23:55:51] 2025-11-21 22:54:56,928 | INFO     | pgrp: 3444
[2025-11-21 23:55:51] 2025-11-21 22:54:56,928 | INFO     | corecount: 8
[2025-11-21 23:55:51] 2025-11-21 22:54:56,928 | INFO     | event service: False
[2025-11-21 23:55:51] 2025-11-21 22:54:56,928 | INFO     | sizes: {0: 2298569, 1: 2298653, 2: 2298852, 13: 2298852, 24: 2298908, 35: 2298936, 45: 2299092, 56: 2299120, 67: 2299148, 78: 2299176, 89: 2299232, 99: 2299830, 93
[2025-11-21 23:55:51] 2025-11-21 22:54:56,928 | INFO     | --------------------------------------------------
[2025-11-21 23:55:51] 2025-11-21 22:54:56,928 | INFO     | 
[2025-11-21 23:55:51] 2025-11-21 22:54:56,929 | INFO     | executing command: ls -lF /var/lib/boinc/slots/13
[2025-11-21 23:55:51] 2025-11-21 22:54:57,354 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-21 23:55:51] 2025-11-21 22:54:57,355 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-21 23:55:51] 2025-11-21 22:54:57,355 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-21 23:55:51] 2025-11-21 22:54:57,355 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-21 23:55:51] 2025-11-21 22:54:57,355 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-21 23:55:51] 2025-11-21 22:54:57,355 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-21 23:55:51] 2025-11-21 22:54:57,355 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-21 23:55:51] 2025-11-21 22:54:57,355 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-21 23:55:51] 2025-11-21 22:54:57,355 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-21 23:55:51] 2025-11-21 22:54:57,356 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-21 23:55:51] 2025-11-21 22:54:57,356 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-21 23:55:51] 2025-11-21 22:54:57,356 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-21 23:55:51] 2025-11-21 22:54:57,356 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-21 23:55:51] 2025-11-21 22:54:57,356 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-21 23:55:51] 2025-11-21 22:54:57,356 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-21 23:55:51] 2025-11-21 22:54:57,356 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-21 23:55:51] 2025-11-21 22:54:57,356 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-21 23:55:51] 2025-11-21 22:54:57,357 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-21 23:55:51] 2025-11-21 22:54:57,357 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-21 23:55:51] 2025-11-21 22:54:57,357 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-21 23:55:51] 2025-11-21 22:54:57,357 | INFO     | job 6891571307 has completed (purged errors)
[2025-11-21 23:55:51] 2025-11-21 22:54:57,357 | INFO     | overall cleanup function is called
[2025-11-21 23:55:51] 2025-11-21 22:54:58,381 | INFO     | --- collectZombieJob: --- 10, [3444]
[2025-11-21 23:55:51] 2025-11-21 22:54:58,382 | INFO     | zombie collector waiting for pid 3444
[2025-11-21 23:55:51] 2025-11-21 22:54:58,382 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-21 23:55:51] 2025-11-21 22:54:58,382 | INFO     | collected zombie processes
[2025-11-21 23:55:51] 2025-11-21 22:54:58,382 | INFO     | will attempt to kill all subprocesses of pid=3444
[2025-11-21 23:55:51] 2025-11-21 22:54:58,553 | INFO     | process IDs to be killed: [3444] (in reverse order)
[2025-11-21 23:55:51] 2025-11-21 22:54:59,303 | WARNING  | found no corresponding commands to process id(s)
[2025-11-21 23:55:51] 2025-11-21 22:54:59,304 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-21 23:55:51] 2025-11-21 22:54:59,308 | INFO     | did not find any defunct processes belonging to 3444
[2025-11-21 23:55:51] 2025-11-21 22:54:59,311 | INFO     | did not find any defunct processes belonging to 3444
[2025-11-21 23:55:51] 2025-11-21 22:54:59,341 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-21 23:55:51] 2025-11-21 22:54:59,341 | INFO     | ready for new job
[2025-11-21 23:55:51] 2025-11-21 22:54:59,341 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-21 23:55:51] 2025-11-21 22:54:59,350 | INFO     | ***************************************
[2025-11-21 23:55:51] 2025-11-21 22:54:59,350 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-21 23:55:51] 2025-11-21 22:54:59,350 | INFO     | ***************************************
[2025-11-21 23:55:51] 2025-11-21 22:54:59,350 | INFO     | 
[2025-11-21 23:55:51] 2025-11-21 22:54:59,351 | INFO     | pilot is running in a VM
[2025-11-21 23:55:51] 2025-11-21 22:54:59,351 | INFO     | architecture information:
[2025-11-21 23:55:51] 2025-11-21 22:54:59,359 | INFO     | executing command: cat /etc/os-release
[2025-11-21 23:55:51] 2025-11-21 22:54:59,587 | INFO     | cat /etc/os-release:
[2025-11-21 23:55:51] NAME="CentOS Linux"
[2025-11-21 23:55:51] VERSION="7 (Core)"
[2025-11-21 23:55:51] ID="centos"
[2025-11-21 23:55:51] ID_LIKE="rhel fedora"
[2025-11-21 23:55:51] VERSION_ID="7"
[2025-11-21 23:55:51] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-21 23:55:51] ANSI_COLOR="0;31"
[2025-11-21 23:55:51] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-21 23:55:51] HOME_URL="https://www.centos.org/"
[2025-11-21 23:55:51] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-21 23:55:51] 
[2025-11-21 23:55:51] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-21 23:55:51] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-21 23:55:51] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-21 23:55:51] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-21 23:55:51] 
[2025-11-21 23:55:51] 2025-11-21 22:54:59,587 | INFO     | ***************************************
[2025-11-21 23:55:51] 2025-11-21 22:55:00,091 | INFO     | executing command: df -mP /var/lib/boinc/slots/13
[2025-11-21 23:55:51] 2025-11-21 22:55:00,265 | INFO     | sufficient remaining disk space (493244907520 B)
[2025-11-21 23:55:51] 2025-11-21 22:55:00,265 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-21 23:55:51] 2025-11-21 22:55:00,265 | INFO     | current server update state: UPDATING_FINAL
[2025-11-21 23:55:51] 2025-11-21 22:55:00,265 | INFO     | update_server=False
[2025-11-21 23:55:51] 2025-11-21 22:55:00,266 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-21 23:55:51] 2025-11-21 22:55:00,332 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-21 23:55:51] 2025-11-21 22:55:00,888 | INFO     | all job control threads have been joined
[2025-11-21 23:55:51] 2025-11-21 22:55:00,928 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-21 23:55:51] 2025-11-21 22:55:01,048 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-21 23:55:51] 2025-11-21 22:55:01,049 | INFO     | aborting loop
[2025-11-21 23:55:51] 2025-11-21 22:55:01,163 | INFO     | all data control threads have been joined
[2025-11-21 23:55:51] 2025-11-21 22:55:01,272 | INFO     | [job] retrieve thread has finished
[2025-11-21 23:55:51] 2025-11-21 22:55:01,502 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-21 23:55:51] 2025-11-21 22:55:01,603 | INFO     | [payload] validate_pre thread has finished
[2025-11-21 23:55:51] 2025-11-21 22:55:01,685 | INFO     | all payload control threads have been joined
[2025-11-21 23:55:51] 2025-11-21 22:55:01,738 | INFO     | [payload] validate_post thread has finished
[2025-11-21 23:55:51] 2025-11-21 22:55:01,895 | INFO     | [job] control thread has finished
[2025-11-21 23:55:51] 2025-11-21 22:55:01,938 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-21 23:55:51] 2025-11-21 22:55:01,954 | INFO     | [job] validate thread has finished
[2025-11-21 23:55:51] 2025-11-21 22:55:02,055 | INFO     | [job] job monitor thread has finished
[2025-11-21 23:55:51] 2025-11-21 22:55:02,170 | INFO     | [data] control thread has finished
[2025-11-21 23:55:51] 2025-11-21 22:55:02,339 | INFO     | [data] copytool_out thread has finished
[2025-11-21 23:55:51] 2025-11-21 22:55:02,368 | INFO     | [payload] failed_post thread has finished
[2025-11-21 23:55:51] 2025-11-21 22:55:02,453 | INFO     | [job] create_data_payload thread has finished
[2025-11-21 23:55:51] 2025-11-21 22:55:02,471 | INFO     | [data] copytool_in thread has finished
[2025-11-21 23:55:51] 2025-11-21 22:55:02,584 | INFO     | [payload] execute_payloads thread has finished
[2025-11-21 23:55:51] 2025-11-21 22:55:02,691 | INFO     | [payload] control thread has finished
[2025-11-21 23:55:51] 2025-11-21 22:55:02,944 | INFO     | [job] queue monitor thread has finished
[2025-11-21 23:55:51] 2025-11-21 22:55:04,937 | INFO     | [data] queue_monitor thread has finished
[2025-11-21 23:55:51] 2025-11-21 22:55:29,057 | INFO     | PID=29237 has CPU usage=1.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-21 23:55:51] 2025-11-21 22:55:29,057 | INFO     | .. there are 9 such processes running
[2025-11-21 23:55:51] 2025-11-21 22:55:29,059 | INFO     | found 0 job(s) in 20 queues
[2025-11-21 23:55:51] 2025-11-21 22:55:29,059 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-21 23:55:51] 2025-11-21 22:55:29,060 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-21 23:55:51] 2025-11-21 22:55:42,912 | INFO     | [monitor] cgroup control has ended
[2025-11-21 23:55:51] 2025-11-21 22:55:43,237 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140130180441920)>', '<ExcThread(monitor, started 140129591084800)>']
[2025-11-21 23:55:51] 2025-11-21 22:55:44,147 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-21 23:55:51] 2025-11-21 22:55:44,148 | INFO     | [monitor] control thread has ended
[2025-11-21 23:55:51] 2025-11-21 22:55:48,263 | INFO     | all workflow threads have been joined
[2025-11-21 23:55:51] 2025-11-21 22:55:48,264 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-21 23:55:51] 2025-11-21 22:55:48,264 | INFO     | traces error code: 0
[2025-11-21 23:55:51] 2025-11-21 22:55:48,265 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-21 23:55:51] 2025-11-21 22:55:48,664 [wrapper] ==== pilot stdout END ====
[2025-11-21 23:55:51] 2025-11-21 22:55:48,802 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-21 23:55:51] 2025-11-21 22:55:48,913 [wrapper] pilotpid: 29237
[2025-11-21 23:55:51] 2025-11-21 22:55:48,988 [wrapper] Pilot exit status: 0
[2025-11-21 23:55:51] 2025-11-21 22:55:49,322 [wrapper] pandaids: 6891571307
[2025-11-21 23:55:51] 2025-11-21 22:55:49,922 [wrapper] cleanup supervisor_pilot  3928 29238
[2025-11-21 23:55:51] 2025-11-21 22:55:49,946 [wrapper] Test setup, not cleaning
[2025-11-21 23:55:51] 2025-11-21 22:55:49,964 [wrapper] apfmon messages muted
[2025-11-21 23:55:51] 2025-11-21 22:55:49,982 [wrapper] ==== wrapper stdout END ====
[2025-11-21 23:55:51] 2025-11-21 22:55:49,987 [wrapper] ==== wrapper stderr END ====
[2025-11-21 23:55:51]  *** Error codes and diagnostics ***
[2025-11-21 23:55:51]     "exeErrorCode": 0,
[2025-11-21 23:55:51]     "exeErrorDiag": "",
[2025-11-21 23:55:51]     "pilotErrorCode": 0,
[2025-11-21 23:55:51]     "pilotErrorDiag": "",
[2025-11-21 23:55:51]  *** Listing of results directory ***
[2025-11-21 23:55:51] total 1342716
[2025-11-21 23:55:51] -rw-r--r--. 1 boinc boinc      5112 Nov 18 16:45 queuedata.json
[2025-11-21 23:55:51] -rwx------. 1 boinc boinc     36292 Nov 18 16:47 runpilot2-wrapper.sh
[2025-11-21 23:55:51] -rw-r--r--. 1 boinc boinc    576529 Nov 18 16:47 pilot3.tar.gz
[2025-11-21 23:55:51] -rw-r--r--. 1 boinc boinc       100 Nov 20 21:45 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-21 23:55:51] -rwxr-xr-x. 1 boinc boinc      7986 Nov 20 21:45 run_atlas
[2025-11-21 23:55:51] -rw-r--r--. 1 boinc boinc       105 Nov 20 21:45 job.xml
[2025-11-21 23:55:51] -rw-r--r--. 2 boinc boinc 412840304 Nov 20 21:45 EVNT.47493065._000279.pool.root.1
[2025-11-21 23:55:51] -rw-r--r--. 1 boinc boinc      6390 Nov 20 21:45 init_data.xml
[2025-11-21 23:55:51] -rw-r--r--. 2 boinc boinc     15120 Nov 20 21:45 start_atlas.sh
[2025-11-21 23:55:51] drwxrwx--x. 2 boinc boinc        68 Nov 20 21:45 shared
[2025-11-21 23:55:51] -rw-r--r--. 2 boinc boinc    590087 Nov 20 21:45 input.tar.gz
[2025-11-21 23:55:51] -rw-r--r--. 1 boinc boinc         0 Nov 20 21:45 boinc_lockfile
[2025-11-21 23:55:51] -rw-r--r--. 1 boinc boinc      2772 Nov 20 21:45 pandaJob.out
[2025-11-21 23:55:51] -rw-------. 1 boinc boinc    989440 Nov 20 21:49 agis_schedconf.cvmfs.json
[2025-11-21 23:55:51] drwx------. 5 boinc boinc      4096 Nov 20 21:49 pilot3
[2025-11-21 23:55:51] -rw-r--r--. 1 boinc boinc       533 Nov 21 23:24 boinc_task_state.xml
[2025-11-21 23:55:51] -rw-------. 1 boinc boinc 928058427 Nov 21 23:51 HITS.47493068._002787.pool.root.1
[2025-11-21 23:55:51] -rw-------. 1 boinc boinc      1033 Nov 21 23:53 memory_monitor_summary.json
[2025-11-21 23:55:51] -rw-------. 1 boinc boinc   1526164 Nov 21 23:53 agis_ddmendpoints.agis.ALL.json
[2025-11-21 23:55:51] -rw-------. 1 boinc boinc   2581627 Nov 21 23:53 log.47493068._002787.job.log.tgz.1
[2025-11-21 23:55:51] -rw-------. 1 boinc boinc      8627 Nov 21 23:54 heartbeat.json
[2025-11-21 23:55:51] -rw-------. 1 boinc boinc        95 Nov 21 23:55 pilot_heartbeat.json
[2025-11-21 23:55:51] -rw-------. 1 boinc boinc      4885 Nov 21 23:55 pilotlog.txt
[2025-11-21 23:55:51] -rw-------. 1 boinc boinc  12482410 Nov 21 23:55 log.47493068._002787.job.log.1
[2025-11-21 23:55:51] -rw-------. 1 boinc boinc       353 Nov 21 23:55 output.list
[2025-11-21 23:55:51] -rw-r--r--. 1 boinc boinc        29 Nov 21 23:55 wrapper_checkpoint.txt
[2025-11-21 23:55:51] -rw-r--r--. 1 boinc boinc       620 Nov 21 23:55 runtime_log
[2025-11-21 23:55:51] -rw-------. 1 boinc boinc  15083520 Nov 21 23:55 result.tar.gz
[2025-11-21 23:55:51] -rw-r--r--. 1 boinc boinc      8192 Nov 21 23:55 boinc_mmap_file
[2025-11-21 23:55:51] -rw-r--r--. 1 boinc boinc      8717 Nov 21 23:55 runtime_log.err
[2025-11-21 23:55:51] -rw-------. 1 boinc boinc       662 Nov 21 23:55 fk3LDmV6cf8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm2fFKDmdgcRfm.diag
[2025-11-21 23:55:51] -rw-r--r--. 1 boinc boinc     21384 Nov 21 23:55 stderr.txt
[2025-11-21 23:55:51] HITS file was successfully produced:
[2025-11-21 23:55:51] -rw-------. 1 boinc boinc 928058427 Nov 21 23:51 shared/HITS.pool.root.1
[2025-11-21 23:55:51]  *** Contents of shared directory: ***
[2025-11-21 23:55:51] total 1324804
[2025-11-21 23:55:51] -rw-r--r--. 2 boinc boinc 412840304 Nov 20 21:45 ATLAS.root_0
[2025-11-21 23:55:51] -rw-r--r--. 2 boinc boinc     15120 Nov 20 21:45 start_atlas.sh
[2025-11-21 23:55:51] -rw-r--r--. 2 boinc boinc    590087 Nov 20 21:45 input.tar.gz
[2025-11-21 23:55:51] -rw-------. 1 boinc boinc 928058427 Nov 21 23:51 HITS.pool.root.1
[2025-11-21 23:55:51] -rw-------. 1 boinc boinc  15083520 Nov 21 23:55 result.tar.gz
23:55:53 (25470): run_atlas exited; CPU time 341844.370809
23:55:53 (25470): called boinc_finish(0)

</stderr_txt>
]]>

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