Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:00:11 (542231): wrapper (7.7.26015): starting
00:00:11 (542231): wrapper: running run_atlas (--nthreads 12)
[2025-11-19 00:00:11] Arguments: --nthreads 12
[2025-11-19 00:00:11] Threads: 12
[2025-11-19 00:00:11] Checking for CVMFS
[2025-11-19 00:00:11] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-19 00:00:12] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-19 00:00:12] Running cvmfs_config stat atlas.cern.ch
[2025-11-19 00:00:12] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-19 00:00:12] 2.13.2.0 7693 23241 184380 153030 0 359 35759466 39288833 8313 16776704 0 16087115 99.539 16966636 28356 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-19 00:00:12] CVMFS is ok
[2025-11-19 00:00:12] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-19 00:00:12] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-19 00:00:12] Further information can be found at the LHC@home message board.
[2025-11-19 00:00:12] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-19 00:00:12] Checking for apptainer binary...
[2025-11-19 00:00:12] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-19 00:00:12] Running /usr/bin/apptainer --version
[2025-11-19 00:00:13] apptainer version 1.4.4-1.el9
[2025-11-19 00:00:13] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-19 00:00:13] c-210-18.aglt2.org
[2025-11-19 00:00:13] apptainer works
[2025-11-19 00:00:13] Set ATHENA_PROC_NUMBER=12
[2025-11-19 00:00:13] Set ATHENA_CORE_NUMBER=12
[2025-11-19 00:00:13] Starting ATLAS job with PandaID=6891571018
[2025-11-19 00:00:13] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-20 13:34:28]  *** The last 200 lines of the pilot log: ***
[2025-11-20 13:34:28] 2025-11-20 18:33:21,824 | INFO     | monitor loop #7789: job 0:6891571018 is in state 'finished'
[2025-11-20 13:34:28] 2025-11-20 18:33:21,827 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-20 13:34:28] 2025-11-20 18:33:23,649 | INFO     | time since job start (135143s) is within the limit (172800.0s)
[2025-11-20 13:34:28] 2025-11-20 18:33:24,334 | INFO     | monitor loop #7790: job 0:6891571018 is in state 'finished'
[2025-11-20 13:34:28] 2025-11-20 18:33:24,334 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-20 13:34:28] 2025-11-20 18:33:25,656 | INFO     | time since job start (135145s) is within the limit (172800.0s)
[2025-11-20 13:34:28] 2025-11-20 18:33:26,844 | INFO     | monitor loop #7791: job 0:6891571018 is in state 'finished'
[2025-11-20 13:34:28] 2025-11-20 18:33:26,850 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-20 13:34:28] 2025-11-20 18:33:27,663 | INFO     | time since job start (135147s) is within the limit (172800.0s)
[2025-11-20 13:34:28] 2025-11-20 18:33:29,506 | INFO     | monitor loop #7792: job 0:6891571018 is in state 'finished'
[2025-11-20 13:34:28] 2025-11-20 18:33:29,506 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-20 13:34:28] 2025-11-20 18:33:30,261 | INFO     | PID=548776 has CPU usage=1.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-20 13:34:28] 2025-11-20 18:33:30,262 | INFO     | .. there are 7 such processes running
[2025-11-20 13:34:28] 2025-11-20 18:33:30,532 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-20 13:34:28] 2025-11-20 18:33:30,539 | INFO     | found 20 cores (10 cores per socket, 2 sockets) HT, CPU MHz: 2599.981925
[2025-11-20 13:34:28] 2025-11-20 18:33:30,546 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6891571018/memory_monitor_summary.json (trf name=prmon)
[2025-11-20 13:34:28] 2025-11-20 18:33:30,547 | INFO     | extracted standard info from prmon json
[2025-11-20 13:34:28] 2025-11-20 18:33:30,547 | INFO     | extracted standard memory fields from prmon json
[2025-11-20 13:34:28] 2025-11-20 18:33:30,547 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-20 13:34:28] 2025-11-20 18:33:30,946 | INFO     | fitting pss+swap vs Time
[2025-11-20 13:34:28] 2025-11-20 18:33:30,951 | INFO     | sum of square deviations: 3356779887220.7056
[2025-11-20 13:34:28] 2025-11-20 18:33:31,097 | INFO     | sum of deviations: 24247536921208.145
[2025-11-20 13:34:28] 2025-11-20 18:33:31,097 | INFO     | mean x: 1763596065.8390596
[2025-11-20 13:34:28] 2025-11-20 18:33:31,097 | INFO     | mean y: 3350914.191681736
[2025-11-20 13:34:28] 2025-11-20 18:33:31,098 | INFO     | intersect: -12735899843.157248
[2025-11-20 13:34:28] 2025-11-20 18:33:31,100 | INFO     | chi2: 47.004283031450335
[2025-11-20 13:34:28] 2025-11-20 18:33:31,104 | INFO     | sum of square deviations: 3334074565098.2905
[2025-11-20 13:34:28] 2025-11-20 18:33:31,232 | INFO     | sum of deviations: 25205710344901.37
[2025-11-20 13:34:28] 2025-11-20 18:33:31,233 | INFO     | mean x: 1763595913.344359
[2025-11-20 13:34:28] 2025-11-20 18:33:31,233 | INFO     | mean y: 3357348.7113729045
[2025-11-20 13:34:28] 2025-11-20 18:33:31,233 | INFO     | intersect: -13329484160.758347
[2025-11-20 13:34:28] 2025-11-20 18:33:31,249 | INFO     | chi2: 43.141385681753555
[2025-11-20 13:34:28] 2025-11-20 18:33:31,249 | INFO     | current chi2=43.141385681753555 (change=8.218181622113319 %)
[2025-11-20 13:34:28] 2025-11-20 18:33:31,250 | INFO     | right removable region: 2206
[2025-11-20 13:34:28] 2025-11-20 18:33:31,254 | INFO     | sum of square deviations: 3334045763751.0703
[2025-11-20 13:34:28] 2025-11-20 18:33:31,327 | INFO     | time since job start (135151s) is within the limit (172800.0s)
[2025-11-20 13:34:28] 2025-11-20 18:33:32,175 | INFO     | monitor loop #7793: job 0:6891571018 is in state 'finished'
[2025-11-20 13:34:28] 2025-11-20 18:33:32,176 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-20 13:34:28] 2025-11-20 18:33:32,227 | INFO     | sum of deviations: 23189730758478.555
[2025-11-20 13:34:28] 2025-11-20 18:33:32,270 | INFO     | mean x: 1763596218.4304485
[2025-11-20 13:34:28] 2025-11-20 18:33:32,270 | INFO     | mean y: 3358013.8341640234
[2025-11-20 13:34:28] 2025-11-20 18:33:32,270 | INFO     | intersect: -12263216703.502724
[2025-11-20 13:34:28] 2025-11-20 18:33:32,273 | INFO     | chi2: 42.485060127457395
[2025-11-20 13:34:28] 2025-11-20 18:33:32,318 | INFO     | current chi2=42.485060127457395 (change=9.61449172827325 %)
[2025-11-20 13:34:28] 2025-11-20 18:33:32,318 | INFO     | left removable region: 10
[2025-11-20 13:34:28] 2025-11-20 18:33:32,321 | INFO     | sum of square deviations: 3284426404192.1353
[2025-11-20 13:34:28] 2025-11-20 18:33:33,424 | INFO     | time since job start (135153s) is within the limit (172800.0s)
[2025-11-20 13:34:28] 2025-11-20 18:33:33,518 | INFO     | sum of deviations: 23354687278457.344
[2025-11-20 13:34:28] 2025-11-20 18:33:33,518 | INFO     | mean x: 1763596188.0291438
[2025-11-20 13:34:28] 2025-11-20 18:33:33,519 | INFO     | mean y: 3372079.2290528235
[2025-11-20 13:34:28] 2025-11-20 18:33:33,519 | INFO     | intersect: -12537093861.59056
[2025-11-20 13:34:28] 2025-11-20 18:33:33,578 | INFO     | chi2: 34.442147787512226
[2025-11-20 13:34:28] 2025-11-20 18:33:33,578 | INFO     | current memory leak: 7.11 B/s (using 2196 data points, chi2=34.44)
[2025-11-20 13:34:28] 2025-11-20 18:33:33,580 | INFO     | could have reported an average CPU frequency of 2599 MHz (76 samples)
[2025-11-20 13:34:28] 2025-11-20 18:33:33,581 | INFO     | ..............................
[2025-11-20 13:34:28] 2025-11-20 18:33:33,581 | INFO     | . Timing measurements:
[2025-11-20 13:34:28] 2025-11-20 18:33:33,581 | INFO     | . get job = 0 s
[2025-11-20 13:34:28] 2025-11-20 18:33:33,581 | INFO     | . initial setup = 6 s
[2025-11-20 13:34:28] 2025-11-20 18:33:33,581 | INFO     | . payload setup = 35 s
[2025-11-20 13:34:28] 2025-11-20 18:33:33,610 | INFO     | . stage-in = 0 s
[2025-11-20 13:34:28] 2025-11-20 18:33:33,610 | INFO     | . payload execution = 134987 s
[2025-11-20 13:34:28] 2025-11-20 18:33:33,610 | INFO     | . stage-out = 11 s
[2025-11-20 13:34:28] 2025-11-20 18:33:33,610 | INFO     | . log creation = 2 s
[2025-11-20 13:34:28] 2025-11-20 18:33:33,611 | INFO     | ..............................
[2025-11-20 13:34:28] 2025-11-20 18:33:33,926 | INFO     | 
[2025-11-20 13:34:28] 2025-11-20 18:33:33,926 | INFO     | job summary report
[2025-11-20 13:34:28] 2025-11-20 18:33:33,926 | INFO     | --------------------------------------------------
[2025-11-20 13:34:28] 2025-11-20 18:33:33,927 | INFO     | PanDA job id: 6891571018
[2025-11-20 13:34:28] 2025-11-20 18:33:33,927 | INFO     | task id: 47493068
[2025-11-20 13:34:28] 2025-11-20 18:33:33,927 | INFO     | errors: (none)
[2025-11-20 13:34:28] 2025-11-20 18:33:33,927 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-20 13:34:28] 2025-11-20 18:33:33,927 | INFO     | pilot state: finished 
[2025-11-20 13:34:28] 2025-11-20 18:33:33,927 | INFO     | transexitcode: 0
[2025-11-20 13:34:28] 2025-11-20 18:33:33,927 | INFO     | exeerrorcode: 0
[2025-11-20 13:34:28] 2025-11-20 18:33:33,927 | INFO     | exeerrordiag: 
[2025-11-20 13:34:28] 2025-11-20 18:33:33,927 | INFO     | exitcode: 0
[2025-11-20 13:34:28] 2025-11-20 18:33:33,928 | INFO     | exitmsg: OK
[2025-11-20 13:34:28] 2025-11-20 18:33:33,928 | INFO     | cpuconsumptiontime: 315789 s
[2025-11-20 13:34:28] 2025-11-20 18:33:33,928 | INFO     | nevents: 1000
[2025-11-20 13:34:28] 2025-11-20 18:33:33,928 | INFO     | neventsw: 0
[2025-11-20 13:34:28] 2025-11-20 18:33:33,928 | INFO     | pid: 562730
[2025-11-20 13:34:28] 2025-11-20 18:33:33,928 | INFO     | pgrp: 562730
[2025-11-20 13:34:28] 2025-11-20 18:33:33,928 | INFO     | corecount: 12
[2025-11-20 13:34:28] 2025-11-20 18:33:33,928 | INFO     | event service: False
[2025-11-20 13:34:28] 2025-11-20 18:33:33,928 | INFO     | sizes: {0: 2296372, 1: 2297057, 2: 2297256, 13: 2297256, 24: 2297312, 25: 2297602, 35: 2297758, 135024: 2384615, 135025: 2384614, 135038: 2395260, 135040: 2395316,
[2025-11-20 13:34:28] 2025-11-20 18:33:33,929 | INFO     | --------------------------------------------------
[2025-11-20 13:34:28] 2025-11-20 18:33:33,929 | INFO     | 
[2025-11-20 13:34:28] 2025-11-20 18:33:33,929 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-11-20 13:34:28] 2025-11-20 18:33:34,254 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-20 13:34:28] 2025-11-20 18:33:34,254 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-20 13:34:28] 2025-11-20 18:33:34,254 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-20 13:34:28] 2025-11-20 18:33:34,254 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-20 13:34:28] 2025-11-20 18:33:34,254 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-20 13:34:28] 2025-11-20 18:33:34,255 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-20 13:34:28] 2025-11-20 18:33:34,255 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-20 13:34:28] 2025-11-20 18:33:34,255 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-20 13:34:28] 2025-11-20 18:33:34,255 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-20 13:34:28] 2025-11-20 18:33:34,255 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-20 13:34:28] 2025-11-20 18:33:34,255 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-20 13:34:28] 2025-11-20 18:33:34,255 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-20 13:34:28] 2025-11-20 18:33:34,255 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-20 13:34:28] 2025-11-20 18:33:34,256 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-20 13:34:28] 2025-11-20 18:33:34,256 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-20 13:34:28] 2025-11-20 18:33:34,256 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-20 13:34:28] 2025-11-20 18:33:34,256 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-20 13:34:28] 2025-11-20 18:33:34,256 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-20 13:34:28] 2025-11-20 18:33:34,256 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-20 13:34:28] 2025-11-20 18:33:34,256 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-20 13:34:28] 2025-11-20 18:33:34,257 | INFO     | job 6891571018 has completed (purged errors)
[2025-11-20 13:34:28] 2025-11-20 18:33:34,257 | INFO     | overall cleanup function is called
[2025-11-20 13:34:28] 2025-11-20 18:33:35,361 | INFO     | --- collectZombieJob: --- 10, [562730]
[2025-11-20 13:34:28] 2025-11-20 18:33:35,362 | INFO     | zombie collector waiting for pid 562730
[2025-11-20 13:34:28] 2025-11-20 18:33:35,362 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-20 13:34:28] 2025-11-20 18:33:35,362 | INFO     | collected zombie processes
[2025-11-20 13:34:28] 2025-11-20 18:33:35,362 | INFO     | will attempt to kill all subprocesses of pid=562730
[2025-11-20 13:34:28] 2025-11-20 18:33:36,061 | INFO     | process IDs to be killed: [562730] (in reverse order)
[2025-11-20 13:34:28] 2025-11-20 18:33:36,335 | WARNING  | found no corresponding commands to process id(s)
[2025-11-20 13:34:28] 2025-11-20 18:33:36,335 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-20 13:34:28] 2025-11-20 18:33:36,441 | INFO     | did not find any defunct processes belonging to 562730
[2025-11-20 13:34:28] 2025-11-20 18:33:36,486 | INFO     | did not find any defunct processes belonging to 562730
[2025-11-20 13:34:28] 2025-11-20 18:33:36,544 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-20 13:34:28] 2025-11-20 18:33:36,544 | INFO     | ready for new job
[2025-11-20 13:34:28] 2025-11-20 18:33:36,544 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-20 13:34:28] 2025-11-20 18:33:36,631 | INFO     | ***************************************
[2025-11-20 13:34:28] 2025-11-20 18:33:36,631 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-20 13:34:28] 2025-11-20 18:33:36,632 | INFO     | ***************************************
[2025-11-20 13:34:28] 2025-11-20 18:33:36,632 | INFO     | 
[2025-11-20 13:34:28] 2025-11-20 18:33:36,633 | INFO     | architecture information:
[2025-11-20 13:34:28] 2025-11-20 18:33:36,683 | INFO     | executing command: cat /etc/os-release
[2025-11-20 13:34:28] 2025-11-20 18:33:36,874 | INFO     | cat /etc/os-release:
[2025-11-20 13:34:28] NAME="CentOS Linux"
[2025-11-20 13:34:28] VERSION="7 (Core)"
[2025-11-20 13:34:28] ID="centos"
[2025-11-20 13:34:28] ID_LIKE="rhel fedora"
[2025-11-20 13:34:28] VERSION_ID="7"
[2025-11-20 13:34:28] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-20 13:34:28] ANSI_COLOR="0;31"
[2025-11-20 13:34:28] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-20 13:34:28] HOME_URL="https://www.centos.org/"
[2025-11-20 13:34:28] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-20 13:34:28] 
[2025-11-20 13:34:28] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-20 13:34:28] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-20 13:34:28] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-20 13:34:28] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-20 13:34:28] 
[2025-11-20 13:34:28] 2025-11-20 18:33:36,874 | INFO     | ***************************************
[2025-11-20 13:34:28] 2025-11-20 18:33:37,377 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-11-20 13:34:28] 2025-11-20 18:33:37,537 | INFO     | sufficient remaining disk space (51258589184 B)
[2025-11-20 13:34:28] 2025-11-20 18:33:37,537 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-20 13:34:28] 2025-11-20 18:33:37,537 | INFO     | current server update state: UPDATING_FINAL
[2025-11-20 13:34:28] 2025-11-20 18:33:37,538 | INFO     | update_server=False
[2025-11-20 13:34:28] 2025-11-20 18:33:37,538 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-20 13:34:28] 2025-11-20 18:33:37,543 | INFO     | all payload control threads have been joined
[2025-11-20 13:34:28] 2025-11-20 18:33:37,557 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-20 13:34:28] 2025-11-20 18:33:37,773 | INFO     | all job control threads have been joined
[2025-11-20 13:34:28] 2025-11-20 18:33:38,046 | INFO     | all data control threads have been joined
[2025-11-20 13:34:28] 2025-11-20 18:33:38,303 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-20 13:34:28] 2025-11-20 18:33:38,304 | INFO     | aborting loop
[2025-11-20 13:34:28] 2025-11-20 18:33:38,543 | INFO     | [job] retrieve thread has finished
[2025-11-20 13:34:28] 2025-11-20 18:33:38,549 | INFO     | [payload] control thread has finished
[2025-11-20 13:34:28] 2025-11-20 18:33:38,631 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-20 13:34:28] 2025-11-20 18:33:38,642 | INFO     | [payload] execute_payloads thread has finished
[2025-11-20 13:34:28] 2025-11-20 18:33:38,779 | INFO     | [job] control thread has finished
[2025-11-20 13:34:28] 2025-11-20 18:33:38,835 | INFO     | [payload] validate_pre thread has finished
[2025-11-20 13:34:28] 2025-11-20 18:33:38,939 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-20 13:34:28] 2025-11-20 18:33:39,052 | INFO     | [data] control thread has finished
[2025-11-20 13:34:28] 2025-11-20 18:33:39,158 | INFO     | [job] create_data_payload thread has finished
[2025-11-20 13:34:28] 2025-11-20 18:33:39,309 | INFO     | [job] job monitor thread has finished
[2025-11-20 13:34:28] 2025-11-20 18:33:39,494 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-20 13:34:28] 2025-11-20 18:33:39,564 | INFO     | [data] copytool_out thread has finished
[2025-11-20 13:34:28] 2025-11-20 18:33:39,706 | INFO     | [payload] validate_post thread has finished
[2025-11-20 13:34:28] 2025-11-20 18:33:39,945 | INFO     | [job] queue monitor thread has finished
[2025-11-20 13:34:28] 2025-11-20 18:33:40,016 | INFO     | [job] validate thread has finished
[2025-11-20 13:34:28] 2025-11-20 18:33:40,017 | INFO     | [data] copytool_in thread has finished
[2025-11-20 13:34:28] 2025-11-20 18:33:40,076 | INFO     | [payload] failed_post thread has finished
[2025-11-20 13:34:28] 2025-11-20 18:33:42,647 | INFO     | [data] queue_monitor thread has finished
[2025-11-20 13:34:28] 2025-11-20 18:34:06,920 | INFO     | PID=548776 has CPU usage=3.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-20 13:34:28] 2025-11-20 18:34:06,921 | INFO     | .. there are 7 such processes running
[2025-11-20 13:34:28] 2025-11-20 18:34:06,921 | INFO     | found 0 job(s) in 20 queues
[2025-11-20 13:34:28] 2025-11-20 18:34:06,921 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-20 13:34:28] 2025-11-20 18:34:06,922 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-20 13:34:28] 2025-11-20 18:34:19,924 | INFO     | [monitor] cgroup control has ended
[2025-11-20 13:34:28] 2025-11-20 18:34:21,754 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140021380556608)>', '<ExcThread(monitor, started 140020354639616)>']
[2025-11-20 13:34:28] 2025-11-20 18:34:22,033 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-20 13:34:28] 2025-11-20 18:34:22,033 | INFO     | [monitor] control thread has ended
[2025-11-20 13:34:28] 2025-11-20 18:34:26,780 | INFO     | all workflow threads have been joined
[2025-11-20 13:34:28] 2025-11-20 18:34:26,780 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-20 13:34:28] 2025-11-20 18:34:26,781 | INFO     | traces error code: 0
[2025-11-20 13:34:28] 2025-11-20 18:34:26,781 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-20 13:34:28] 2025-11-20 18:34:28,044 [wrapper] ==== pilot stdout END ====
[2025-11-20 13:34:28] 2025-11-20 18:34:28,051 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-20 13:34:28] 2025-11-20 18:34:28,054 [wrapper] pilotpid: 548776
[2025-11-20 13:34:28] 2025-11-20 18:34:28,058 [wrapper] Pilot exit status: 0
[2025-11-20 13:34:28] 2025-11-20 18:34:28,119 [wrapper] pandaids: 6891571018
[2025-11-20 13:34:28] 2025-11-20 18:34:28,176 [wrapper] cleanup supervisor_pilot 3675090 548777
[2025-11-20 13:34:28] 2025-11-20 18:34:28,180 [wrapper] Test setup, not cleaning
[2025-11-20 13:34:28] 2025-11-20 18:34:28,184 [wrapper] apfmon messages muted
[2025-11-20 13:34:28] 2025-11-20 18:34:28,188 [wrapper] ==== wrapper stdout END ====
[2025-11-20 13:34:28] 2025-11-20 18:34:28,220 [wrapper] ==== wrapper stderr END ====
[2025-11-20 13:34:28]  *** Error codes and diagnostics ***
[2025-11-20 13:34:28]     "exeErrorCode": 0,
[2025-11-20 13:34:28]     "exeErrorDiag": "",
[2025-11-20 13:34:28]     "pilotErrorCode": 0,
[2025-11-20 13:34:28]     "pilotErrorDiag": "",
[2025-11-20 13:34:28]  *** Listing of results directory ***
[2025-11-20 13:34:28] total 1347988
[2025-11-20 13:34:28] -rw-r--r--. 1 boincer umatlas    576529 Nov 18 10:15 pilot3.tar.gz
[2025-11-20 13:34:28] -rw-r--r--. 1 boincer umatlas      5112 Nov 18 10:42 queuedata.json
[2025-11-20 13:34:28] -rwx------. 1 boincer umatlas     36292 Nov 18 10:43 runpilot2-wrapper.sh
[2025-11-20 13:34:28] -rw-r--r--. 1 boincer umatlas       100 Nov 19 00:00 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-20 13:34:28] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 19 00:00 run_atlas
[2025-11-20 13:34:28] -rw-r--r--. 1 boincer umatlas       105 Nov 19 00:00 job.xml
[2025-11-20 13:34:28] -rw-r--r--. 2 boincer umatlas 410743618 Nov 19 00:00 EVNT.47493065._000261.pool.root.1
[2025-11-20 13:34:28] -rw-r--r--. 2 boincer umatlas     15120 Nov 19 00:00 start_atlas.sh
[2025-11-20 13:34:28] drwxrwx--x. 2 boincer umatlas      4096 Nov 19 00:00 shared
[2025-11-20 13:34:28] -rw-r--r--. 2 boincer umatlas    590101 Nov 19 00:00 input.tar.gz
[2025-11-20 13:34:28] -rw-r--r--. 1 boincer umatlas         0 Nov 19 00:00 boinc_lockfile
[2025-11-20 13:34:28] -rw-r--r--. 1 boincer umatlas      2773 Nov 19 00:00 pandaJob.out
[2025-11-20 13:34:28] -rw-------. 1 boincer umatlas    992806 Nov 19 00:00 agis_schedconf.cvmfs.json
[2025-11-20 13:34:28] drwx------. 5 boincer umatlas      4096 Nov 19 00:01 pilot3
[2025-11-20 13:34:28] -rw-r--r--. 1 boincer umatlas       533 Nov 20 12:58 boinc_task_state.xml
[2025-11-20 13:34:28] -rw-------. 1 boincer umatlas 925977832 Nov 20 13:29 HITS.47493068._002606.pool.root.1
[2025-11-20 13:34:28] -rw-r--r--. 1 boincer umatlas      6658 Nov 20 13:30 init_data.xml
[2025-11-20 13:34:28] -rw-------. 1 boincer umatlas      1073 Nov 20 13:32 memory_monitor_summary.json
[2025-11-20 13:34:28] -rw-------. 1 boincer umatlas   1526164 Nov 20 13:32 agis_ddmendpoints.agis.ALL.json
[2025-11-20 13:34:28] -rw-------. 1 boincer umatlas   3407814 Nov 20 13:32 log.47493068._002606.job.log.tgz.1
[2025-11-20 13:34:28] -rw-------. 1 boincer umatlas        95 Nov 20 13:33 pilot_heartbeat.json
[2025-11-20 13:34:28] -rw-------. 1 boincer umatlas      8662 Nov 20 13:33 heartbeat.json
[2025-11-20 13:34:28] -rw-r--r--. 1 boincer umatlas      8192 Nov 20 13:34 boinc_mmap_file
[2025-11-20 13:34:28] -rw-r--r--. 1 boincer umatlas        29 Nov 20 13:34 wrapper_checkpoint.txt
[2025-11-20 13:34:28] -rw-------. 1 boincer umatlas      4822 Nov 20 13:34 pilotlog.txt
[2025-11-20 13:34:28] -rw-------. 1 boincer umatlas  16442973 Nov 20 13:34 log.47493068._002606.job.log.1
[2025-11-20 13:34:28] -rw-------. 1 boincer umatlas       353 Nov 20 13:34 output.list
[2025-11-20 13:34:28] -rw-r--r--. 1 boincer umatlas       620 Nov 20 13:34 runtime_log
[2025-11-20 13:34:28] -rw-------. 1 boincer umatlas  19865600 Nov 20 13:34 result.tar.gz
[2025-11-20 13:34:28] -rw-r--r--. 1 boincer umatlas      8707 Nov 20 13:34 runtime_log.err
[2025-11-20 13:34:28] -rw-------. 1 boincer umatlas       668 Nov 20 13:34 M4ONDmY2cf8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmYeFKDmez40Lo.diag
[2025-11-20 13:34:28] -rw-r--r--. 1 boincer umatlas     21894 Nov 20 13:34 stderr.txt
[2025-11-20 13:34:28] HITS file was successfully produced:
[2025-11-20 13:34:28] -rw-------. 1 boincer umatlas 925977832 Nov 20 13:29 shared/HITS.pool.root.1
[2025-11-20 13:34:28]  *** Contents of shared directory: ***
[2025-11-20 13:34:28] total 1325396
[2025-11-20 13:34:28] -rw-r--r--. 2 boincer umatlas 410743618 Nov 19 00:00 ATLAS.root_0
[2025-11-20 13:34:28] -rw-r--r--. 2 boincer umatlas     15120 Nov 19 00:00 start_atlas.sh
[2025-11-20 13:34:28] -rw-r--r--. 2 boincer umatlas    590101 Nov 19 00:00 input.tar.gz
[2025-11-20 13:34:28] -rw-------. 1 boincer umatlas 925977832 Nov 20 13:29 HITS.pool.root.1
[2025-11-20 13:34:28] -rw-------. 1 boincer umatlas  19865600 Nov 20 13:34 result.tar.gz
13:34:30 (542231): run_atlas exited; CPU time 316955.695139
13:34:30 (542231): called boinc_finish(0)

</stderr_txt>
]]>

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