Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
19:48:02 (29469): wrapper (7.7.26015): starting
19:48:02 (29469): wrapper: running run_atlas (--nthreads 8)
[2025-11-19 19:48:02] Arguments: --nthreads 8
[2025-11-19 19:48:02] Threads: 8
[2025-11-19 19:48:02] Checking for CVMFS
[2025-11-19 19:48:03] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-19 19:48:03] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-19 19:48:03] Running cvmfs_config stat atlas.cern.ch
[2025-11-19 19:48:05] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-19 19:48:05] 2.11.2.0 2066 78963 100584 153052 3 237 23292546 25165824 4632 130560 2 20470967 99.892 11816791 2140 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-19 19:48:05] CVMFS is ok
[2025-11-19 19:48:05] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-19 19:48:05] Checking for apptainer binary...
[2025-11-19 19:48:05] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-19 19:48:05] Running /usr/bin/apptainer --version
[2025-11-19 19:48:05] apptainer version 1.3.2-1.el7
[2025-11-19 19:48:05] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-19 19:48:20] cg-vwn446.simple-grid.lan
[2025-11-19 19:48:20] apptainer works
[2025-11-19 19:48:20] Set ATHENA_PROC_NUMBER=8
[2025-11-19 19:48:20] Set ATHENA_CORE_NUMBER=8
[2025-11-19 19:48:20] Starting ATLAS job with PandaID=6891570854
[2025-11-19 19:48:20] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/6 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-20 21:40:09]  *** The last 200 lines of the pilot log: ***
[2025-11-20 21:40:09] 2025-11-20 20:39:08,506 | INFO     | time since job start (92809s) is within the limit (172800.0s)
[2025-11-20 21:40:09] 2025-11-20 20:39:10,513 | INFO     | time since job start (92811s) is within the limit (172800.0s)
[2025-11-20 21:40:09] 2025-11-20 20:39:10,641 | INFO     | monitor loop #6226: job 0:6891570854 is in state 'finished'
[2025-11-20 21:40:09] 2025-11-20 20:39:10,641 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-20 21:40:09] 2025-11-20 20:39:12,521 | INFO     | time since job start (92813s) is within the limit (172800.0s)
[2025-11-20 21:40:09] 2025-11-20 20:39:13,150 | INFO     | monitor loop #6227: job 0:6891570854 is in state 'finished'
[2025-11-20 21:40:09] 2025-11-20 20:39:13,150 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-20 21:40:09] 2025-11-20 20:39:14,528 | INFO     | time since job start (92815s) is within the limit (172800.0s)
[2025-11-20 21:40:09] 2025-11-20 20:39:15,655 | INFO     | monitor loop #6228: job 0:6891570854 is in state 'finished'
[2025-11-20 21:40:09] 2025-11-20 20:39:15,655 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-20 21:40:09] 2025-11-20 20:39:16,536 | INFO     | time since job start (92817s) is within the limit (172800.0s)
[2025-11-20 21:40:09] 2025-11-20 20:39:18,160 | INFO     | monitor loop #6229: job 0:6891570854 is in state 'finished'
[2025-11-20 21:40:09] 2025-11-20 20:39:18,160 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-20 21:40:09] 2025-11-20 20:39:18,544 | INFO     | time since job start (92819s) is within the limit (172800.0s)
[2025-11-20 21:40:09] 2025-11-20 20:39:18,576 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-20 21:40:09] 2025-11-20 20:39:18,577 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-11-20 21:40:09] 2025-11-20 20:39:18,579 | INFO     | using path: /var/lib/boinc/slots/6/PanDA_Pilot-6891570854/memory_monitor_summary.json (trf name=prmon)
[2025-11-20 21:40:09] 2025-11-20 20:39:18,580 | INFO     | extracted standard info from prmon json
[2025-11-20 21:40:09] 2025-11-20 20:39:18,580 | INFO     | extracted standard memory fields from prmon json
[2025-11-20 21:40:09] 2025-11-20 20:39:18,580 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-20 21:40:09] 2025-11-20 20:39:18,608 | INFO     | fitting pss+swap vs Time
[2025-11-20 21:40:09] 2025-11-20 20:39:18,611 | INFO     | sum of square deviations: 1071851931242.8463
[2025-11-20 21:40:09] 2025-11-20 20:39:18,674 | INFO     | sum of deviations: 4430487299236.929
[2025-11-20 21:40:09] 2025-11-20 20:39:18,674 | INFO     | mean x: 1763624950.716931
[2025-11-20 21:40:09] 2025-11-20 20:39:18,674 | INFO     | mean y: 2843631.8736772486
[2025-11-20 21:40:09] 2025-11-20 20:39:18,674 | INFO     | intersect: -7287079273.530303
[2025-11-20 21:40:09] 2025-11-20 20:39:18,676 | INFO     | chi2: 24.035089682076453
[2025-11-20 21:40:09] 2025-11-20 20:39:18,679 | INFO     | sum of square deviations: 1061254191395.4178
[2025-11-20 21:40:09] 2025-11-20 20:39:18,756 | INFO     | sum of deviations: 4926914991740.003
[2025-11-20 21:40:09] 2025-11-20 20:39:18,757 | INFO     | mean x: 1763624798.2209687
[2025-11-20 21:40:09] 2025-11-20 20:39:18,757 | INFO     | mean y: 2850773.8798938286
[2025-11-20 21:40:09] 2025-11-20 20:39:18,757 | INFO     | intersect: -8184847827.087766
[2025-11-20 21:40:09] 2025-11-20 20:39:18,759 | INFO     | chi2: 20.89927669158857
[2025-11-20 21:40:09] 2025-11-20 20:39:18,759 | INFO     | current chi2=20.89927669158857 (change=13.046812106660594 %)
[2025-11-20 21:40:09] 2025-11-20 20:39:18,759 | INFO     | right removable region: 1506
[2025-11-20 21:40:09] 2025-11-20 20:39:18,761 | INFO     | sum of square deviations: 1061253068995.4169
[2025-11-20 21:40:09] 2025-11-20 20:39:18,825 | INFO     | sum of deviations: 3787860556247.628
[2025-11-20 21:40:09] 2025-11-20 20:39:18,826 | INFO     | mean x: 1763625103.2209687
[2025-11-20 21:40:09] 2025-11-20 20:39:18,826 | INFO     | mean y: 2852878.03715992
[2025-11-20 21:40:09] 2025-11-20 20:39:18,826 | INFO     | intersect: -6291937836.511726
[2025-11-20 21:40:09] 2025-11-20 20:39:18,828 | INFO     | chi2: 19.159242313605958
[2025-11-20 21:40:09] 2025-11-20 20:39:18,828 | INFO     | current chi2=19.159242313605958 (change=20.28637060633284 %)
[2025-11-20 21:40:09] 2025-11-20 20:39:18,828 | INFO     | left removable region: 10
[2025-11-20 21:40:09] 2025-11-20 20:39:18,830 | INFO     | sum of square deviations: 1038183323550.8975
[2025-11-20 21:40:09] 2025-11-20 20:39:18,895 | INFO     | sum of deviations: 3825021852175.2134
[2025-11-20 21:40:09] 2025-11-20 20:39:18,896 | INFO     | mean x: 1763625072.7299466
[2025-11-20 21:40:09] 2025-11-20 20:39:18,896 | INFO     | mean y: 2869728.1737967916
[2025-11-20 21:40:09] 2025-11-20 20:39:18,896 | INFO     | intersect: -6494927230.424166
[2025-11-20 21:40:09] 2025-11-20 20:39:18,897 | INFO     | chi2: 11.739347874530752
[2025-11-20 21:40:09] 2025-11-20 20:39:18,898 | INFO     | current memory leak: 3.68 B/s (using 1496 data points, chi2=11.74)
[2025-11-20 21:40:09] 2025-11-20 20:39:18,900 | INFO     | could have reported an average CPU frequency of 1999 MHz (51 samples)
[2025-11-20 21:40:09] 2025-11-20 20:39:18,900 | INFO     | ..............................
[2025-11-20 21:40:09] 2025-11-20 20:39:18,900 | INFO     | . Timing measurements:
[2025-11-20 21:40:09] 2025-11-20 20:39:18,900 | INFO     | . get job = 0 s
[2025-11-20 21:40:09] 2025-11-20 20:39:18,901 | INFO     | . initial setup = 6 s
[2025-11-20 21:40:09] 2025-11-20 20:39:18,901 | INFO     | . payload setup = 165 s
[2025-11-20 21:40:09] 2025-11-20 20:39:18,901 | INFO     | . stage-in = 0 s
[2025-11-20 21:40:09] 2025-11-20 20:39:18,901 | INFO     | . payload execution = 92353 s
[2025-11-20 21:40:09] 2025-11-20 20:39:18,901 | INFO     | . stage-out = 10 s
[2025-11-20 21:40:09] 2025-11-20 20:39:18,901 | INFO     | . log creation = 2 s
[2025-11-20 21:40:09] 2025-11-20 20:39:18,901 | INFO     | ..............................
[2025-11-20 21:40:09] 2025-11-20 20:39:19,380 | INFO     | 
[2025-11-20 21:40:09] 2025-11-20 20:39:19,380 | INFO     | job summary report
[2025-11-20 21:40:09] 2025-11-20 20:39:19,380 | INFO     | --------------------------------------------------
[2025-11-20 21:40:09] 2025-11-20 20:39:19,380 | INFO     | PanDA job id: 6891570854
[2025-11-20 21:40:09] 2025-11-20 20:39:19,380 | INFO     | task id: 47493068
[2025-11-20 21:40:09] 2025-11-20 20:39:19,380 | INFO     | errors: (none)
[2025-11-20 21:40:09] 2025-11-20 20:39:19,380 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-20 21:40:09] 2025-11-20 20:39:19,381 | INFO     | pilot state: finished 
[2025-11-20 21:40:09] 2025-11-20 20:39:19,381 | INFO     | transexitcode: 0
[2025-11-20 21:40:09] 2025-11-20 20:39:19,381 | INFO     | exeerrorcode: 0
[2025-11-20 21:40:09] 2025-11-20 20:39:19,381 | INFO     | exeerrordiag: 
[2025-11-20 21:40:09] 2025-11-20 20:39:19,381 | INFO     | exitcode: 0
[2025-11-20 21:40:09] 2025-11-20 20:39:19,381 | INFO     | exitmsg: OK
[2025-11-20 21:40:09] 2025-11-20 20:39:19,381 | INFO     | cpuconsumptiontime: 342884 s
[2025-11-20 21:40:09] 2025-11-20 20:39:19,381 | INFO     | nevents: 1000
[2025-11-20 21:40:09] 2025-11-20 20:39:19,381 | INFO     | neventsw: 0
[2025-11-20 21:40:09] 2025-11-20 20:39:19,381 | INFO     | pid: 7507
[2025-11-20 21:40:09] 2025-11-20 20:39:19,381 | INFO     | pgrp: 7507
[2025-11-20 21:40:09] 2025-11-20 20:39:19,381 | INFO     | corecount: 8
[2025-11-20 21:40:09] 2025-11-20 20:39:19,381 | INFO     | event service: False
[2025-11-20 21:40:09] 2025-11-20 20:39:19,382 | INFO     | sizes: {0: 2296372, 1: 2297057, 2: 2297256, 13: 2297256, 23: 2297312, 34: 2297340, 45: 2297496, 56: 2297524, 66: 2297552, 77: 2297580, 88: 2297636, 97: 2298206, 99
[2025-11-20 21:40:09] 2025-11-20 20:39:19,382 | INFO     | --------------------------------------------------
[2025-11-20 21:40:09] 2025-11-20 20:39:19,382 | INFO     | 
[2025-11-20 21:40:09] 2025-11-20 20:39:19,382 | INFO     | executing command: ls -lF /var/lib/boinc/slots/6
[2025-11-20 21:40:09] 2025-11-20 20:39:19,832 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-20 21:40:09] 2025-11-20 20:39:19,833 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-20 21:40:09] 2025-11-20 20:39:19,833 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-20 21:40:09] 2025-11-20 20:39:19,833 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-20 21:40:09] 2025-11-20 20:39:19,833 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-20 21:40:09] 2025-11-20 20:39:19,833 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-20 21:40:09] 2025-11-20 20:39:19,833 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-20 21:40:09] 2025-11-20 20:39:19,833 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-20 21:40:09] 2025-11-20 20:39:19,833 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-20 21:40:09] 2025-11-20 20:39:19,833 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-20 21:40:09] 2025-11-20 20:39:19,833 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-20 21:40:09] 2025-11-20 20:39:19,834 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-20 21:40:09] 2025-11-20 20:39:19,834 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-20 21:40:09] 2025-11-20 20:39:19,834 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-20 21:40:09] 2025-11-20 20:39:19,834 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-20 21:40:09] 2025-11-20 20:39:19,834 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-20 21:40:09] 2025-11-20 20:39:19,834 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-20 21:40:09] 2025-11-20 20:39:19,834 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-20 21:40:09] 2025-11-20 20:39:19,834 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-20 21:40:09] 2025-11-20 20:39:19,834 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-20 21:40:09] 2025-11-20 20:39:19,834 | INFO     | job 6891570854 has completed (purged errors)
[2025-11-20 21:40:09] 2025-11-20 20:39:19,835 | INFO     | overall cleanup function is called
[2025-11-20 21:40:09] 2025-11-20 20:39:20,871 | INFO     | --- collectZombieJob: --- 10, [7507]
[2025-11-20 21:40:09] 2025-11-20 20:39:20,871 | INFO     | zombie collector waiting for pid 7507
[2025-11-20 21:40:09] 2025-11-20 20:39:20,871 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-20 21:40:09] 2025-11-20 20:39:20,871 | INFO     | collected zombie processes
[2025-11-20 21:40:09] 2025-11-20 20:39:20,871 | INFO     | will attempt to kill all subprocesses of pid=7507
[2025-11-20 21:40:09] 2025-11-20 20:39:21,037 | INFO     | process IDs to be killed: [7507] (in reverse order)
[2025-11-20 21:40:09] 2025-11-20 20:39:21,942 | WARNING  | found no corresponding commands to process id(s)
[2025-11-20 21:40:09] 2025-11-20 20:39:21,943 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-20 21:40:09] 2025-11-20 20:39:21,947 | INFO     | did not find any defunct processes belonging to 7507
[2025-11-20 21:40:09] 2025-11-20 20:39:21,950 | INFO     | did not find any defunct processes belonging to 7507
[2025-11-20 21:40:09] 2025-11-20 20:39:22,023 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-20 21:40:09] 2025-11-20 20:39:22,023 | INFO     | ready for new job
[2025-11-20 21:40:09] 2025-11-20 20:39:22,024 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-20 21:40:09] 2025-11-20 20:39:22,031 | INFO     | ***************************************
[2025-11-20 21:40:09] 2025-11-20 20:39:22,031 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-20 21:40:09] 2025-11-20 20:39:22,031 | INFO     | ***************************************
[2025-11-20 21:40:09] 2025-11-20 20:39:22,031 | INFO     | 
[2025-11-20 21:40:09] 2025-11-20 20:39:22,032 | INFO     | pilot is running in a VM
[2025-11-20 21:40:09] 2025-11-20 20:39:22,032 | INFO     | architecture information:
[2025-11-20 21:40:09] 2025-11-20 20:39:22,037 | INFO     | executing command: cat /etc/os-release
[2025-11-20 21:40:09] 2025-11-20 20:39:22,232 | INFO     | cat /etc/os-release:
[2025-11-20 21:40:09] NAME="CentOS Linux"
[2025-11-20 21:40:09] VERSION="7 (Core)"
[2025-11-20 21:40:09] ID="centos"
[2025-11-20 21:40:09] ID_LIKE="rhel fedora"
[2025-11-20 21:40:09] VERSION_ID="7"
[2025-11-20 21:40:09] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-20 21:40:09] ANSI_COLOR="0;31"
[2025-11-20 21:40:09] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-20 21:40:09] HOME_URL="https://www.centos.org/"
[2025-11-20 21:40:09] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-20 21:40:09] 
[2025-11-20 21:40:09] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-20 21:40:09] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-20 21:40:09] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-20 21:40:09] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-20 21:40:09] 
[2025-11-20 21:40:09] 2025-11-20 20:39:22,233 | INFO     | ***************************************
[2025-11-20 21:40:09] 2025-11-20 20:39:22,736 | INFO     | executing command: df -mP /var/lib/boinc/slots/6
[2025-11-20 21:40:09] 2025-11-20 20:39:22,953 | INFO     | sufficient remaining disk space (494877540352 B)
[2025-11-20 21:40:09] 2025-11-20 20:39:22,953 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-20 21:40:09] 2025-11-20 20:39:22,954 | INFO     | current server update state: UPDATING_FINAL
[2025-11-20 21:40:09] 2025-11-20 20:39:22,954 | INFO     | update_server=False
[2025-11-20 21:40:09] 2025-11-20 20:39:22,954 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-20 21:40:09] 2025-11-20 20:39:22,956 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-20 21:40:09] 2025-11-20 20:39:23,002 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-20 21:40:09] 2025-11-20 20:39:23,173 | INFO     | all payload control threads have been joined
[2025-11-20 21:40:09] 2025-11-20 20:39:23,174 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-20 21:40:09] 2025-11-20 20:39:23,174 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-20 21:40:09] 2025-11-20 20:39:23,174 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-20 21:40:09] 2025-11-20 20:39:23,174 | INFO     | will abort loop
[2025-11-20 21:40:09] 2025-11-20 20:39:23,285 | INFO     | all data control threads have been joined
[2025-11-20 21:40:09] 2025-11-20 20:39:23,914 | INFO     | all job control threads have been joined
[2025-11-20 21:40:09] 2025-11-20 20:39:23,961 | INFO     | [job] retrieve thread has finished
[2025-11-20 21:40:09] 2025-11-20 20:39:24,061 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-20 21:40:09] 2025-11-20 20:39:24,179 | INFO     | [payload] control thread has finished
[2025-11-20 21:40:09] 2025-11-20 20:39:24,181 | INFO     | [job] job monitor thread has finished
[2025-11-20 21:40:09] 2025-11-20 20:39:24,183 | INFO     | [payload] validate_post thread has finished
[2025-11-20 21:40:09] 2025-11-20 20:39:24,291 | INFO     | [data] control thread has finished
[2025-11-20 21:40:09] 2025-11-20 20:39:24,606 | INFO     | [payload] validate_pre thread has finished
[2025-11-20 21:40:09] 2025-11-20 20:39:24,639 | INFO     | [payload] failed_post thread has finished
[2025-11-20 21:40:09] 2025-11-20 20:39:24,702 | INFO     | [payload] execute_payloads thread has finished
[2025-11-20 21:40:09] 2025-11-20 20:39:24,866 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-20 21:40:09] 2025-11-20 20:39:24,916 | INFO     | [job] create_data_payload thread has finished
[2025-11-20 21:40:09] 2025-11-20 20:39:24,920 | INFO     | [job] control thread has finished
[2025-11-20 21:40:09] 2025-11-20 20:39:24,962 | INFO     | [data] copytool_out thread has finished
[2025-11-20 21:40:09] 2025-11-20 20:39:25,067 | INFO     | [job] queue monitor thread has finished
[2025-11-20 21:40:09] 2025-11-20 20:39:25,085 | INFO     | [data] copytool_in thread has finished
[2025-11-20 21:40:09] 2025-11-20 20:39:25,252 | INFO     | [job] validate thread has finished
[2025-11-20 21:40:09] 2025-11-20 20:39:27,011 | INFO     | [data] queue_monitor thread has finished
[2025-11-20 21:40:09] 2025-11-20 20:39:51,737 | INFO     | PID=867 has CPU usage=1.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -j
[2025-11-20 21:40:09] 2025-11-20 20:39:51,737 | INFO     | .. there are 9 such processes running
[2025-11-20 21:40:09] 2025-11-20 20:39:51,737 | INFO     | found 0 job(s) in 20 queues
[2025-11-20 21:40:09] 2025-11-20 20:39:51,737 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-20 21:40:09] 2025-11-20 20:39:51,738 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-20 21:40:09] 2025-11-20 20:40:00,543 | INFO     | [monitor] cgroup control has ended
[2025-11-20 21:40:09] 2025-11-20 20:40:00,658 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140447306618688)>', '<ExcThread(monitor, started 140446437209856)>']
[2025-11-20 21:40:09] 2025-11-20 20:40:00,793 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-20 21:40:09] 2025-11-20 20:40:00,793 | INFO     | [monitor] control thread has ended
[2025-11-20 21:40:09] 2025-11-20 20:40:05,684 | INFO     | all workflow threads have been joined
[2025-11-20 21:40:09] 2025-11-20 20:40:05,684 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-20 21:40:09] 2025-11-20 20:40:05,684 | INFO     | traces error code: 0
[2025-11-20 21:40:09] 2025-11-20 20:40:05,684 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-20 21:40:09] 2025-11-20 20:40:06,150 [wrapper] ==== pilot stdout END ====
[2025-11-20 21:40:09] 2025-11-20 20:40:06,235 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-20 21:40:09] 2025-11-20 20:40:06,368 [wrapper] pilotpid: 867
[2025-11-20 21:40:09] 2025-11-20 20:40:06,478 [wrapper] Pilot exit status: 0
[2025-11-20 21:40:09] 2025-11-20 20:40:07,013 [wrapper] pandaids: 6891570854
[2025-11-20 21:40:09] 2025-11-20 20:40:08,064 [wrapper] cleanup supervisor_pilot 18654 868
[2025-11-20 21:40:09] 2025-11-20 20:40:08,193 [wrapper] Test setup, not cleaning
[2025-11-20 21:40:09] 2025-11-20 20:40:08,317 [wrapper] apfmon messages muted
[2025-11-20 21:40:09] 2025-11-20 20:40:08,407 [wrapper] ==== wrapper stdout END ====
[2025-11-20 21:40:09] 2025-11-20 20:40:08,512 [wrapper] ==== wrapper stderr END ====
[2025-11-20 21:40:09]  *** Error codes and diagnostics ***
[2025-11-20 21:40:09]     "exeErrorCode": 0,
[2025-11-20 21:40:09]     "exeErrorDiag": "",
[2025-11-20 21:40:09]     "pilotErrorCode": 0,
[2025-11-20 21:40:09]     "pilotErrorDiag": "",
[2025-11-20 21:40:09]  *** Listing of results directory ***
[2025-11-20 21:40:09] total 1334420
[2025-11-20 21:40:09] -rw-r--r--. 1 boinc boinc    576529 Nov 18 16:15 pilot3.tar.gz
[2025-11-20 21:40:09] -rw-r--r--. 1 boinc boinc      5112 Nov 18 16:39 queuedata.json
[2025-11-20 21:40:09] -rwx------. 1 boinc boinc     36292 Nov 18 16:40 runpilot2-wrapper.sh
[2025-11-20 21:40:09] -rw-r--r--. 1 boinc boinc       100 Nov 19 19:48 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-20 21:40:09] -rwxr-xr-x. 1 boinc boinc      7986 Nov 19 19:48 run_atlas
[2025-11-20 21:40:09] -rw-r--r--. 1 boinc boinc       105 Nov 19 19:48 job.xml
[2025-11-20 21:40:09] -rw-r--r--. 2 boinc boinc 409201777 Nov 19 19:48 EVNT.47493065._000255.pool.root.1
[2025-11-20 21:40:09] -rw-r--r--. 1 boinc boinc      6391 Nov 19 19:48 init_data.xml
[2025-11-20 21:40:09] -rw-r--r--. 2 boinc boinc     15120 Nov 19 19:48 start_atlas.sh
[2025-11-20 21:40:09] drwxrwx--x. 2 boinc boinc        68 Nov 19 19:48 shared
[2025-11-20 21:40:09] -rw-r--r--. 2 boinc boinc    590100 Nov 19 19:48 input.tar.gz
[2025-11-20 21:40:09] -rw-r--r--. 1 boinc boinc         0 Nov 19 19:48 boinc_lockfile
[2025-11-20 21:40:09] -rw-r--r--. 1 boinc boinc      2773 Nov 19 19:48 pandaJob.out
[2025-11-20 21:40:09] -rw-------. 1 boinc boinc    989434 Nov 19 19:52 agis_schedconf.cvmfs.json
[2025-11-20 21:40:09] drwx------. 5 boinc boinc      4096 Nov 19 19:52 pilot3
[2025-11-20 21:40:09] -rw-r--r--. 1 boinc boinc       533 Nov 20 21:16 boinc_task_state.xml
[2025-11-20 21:40:09] -rw-------. 1 boinc boinc 923514163 Nov 20 21:35 HITS.47493068._002543.pool.root.1
[2025-11-20 21:40:09] -rw-------. 1 boinc boinc      1029 Nov 20 21:37 memory_monitor_summary.json
[2025-11-20 21:40:09] -rw-------. 1 boinc boinc   1526164 Nov 20 21:37 agis_ddmendpoints.agis.ALL.json
[2025-11-20 21:40:09] -rw-------. 1 boinc boinc   2581959 Nov 20 21:37 log.47493068._002543.job.log.tgz.1
[2025-11-20 21:40:09] -rw-------. 1 boinc boinc        95 Nov 20 21:38 pilot_heartbeat.json
[2025-11-20 21:40:09] -rw-------. 1 boinc boinc      8630 Nov 20 21:39 heartbeat.json
[2025-11-20 21:40:09] -rw-r--r--. 1 boinc boinc      8192 Nov 20 21:39 boinc_mmap_file
[2025-11-20 21:40:09] -rw-r--r--. 1 boinc boinc        29 Nov 20 21:39 wrapper_checkpoint.txt
[2025-11-20 21:40:09] -rw-------. 1 boinc boinc      5068 Nov 20 21:40 pilotlog.txt
[2025-11-20 21:40:09] -rw-------. 1 boinc boinc  12327801 Nov 20 21:40 log.47493068._002543.job.log.1
[2025-11-20 21:40:09] -rw-------. 1 boinc boinc       353 Nov 20 21:40 output.list
[2025-11-20 21:40:09] -rw-r--r--. 1 boinc boinc       620 Nov 20 21:40 runtime_log
[2025-11-20 21:40:09] -rw-------. 1 boinc boinc  14929920 Nov 20 21:40 result.tar.gz
[2025-11-20 21:40:09] -rw-------. 1 boinc boinc       662 Nov 20 21:40 UjgLDmkzcf8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmwOFKDmmTyZnn.diag
[2025-11-20 21:40:09] -rw-r--r--. 1 boinc boinc      8703 Nov 20 21:40 runtime_log.err
[2025-11-20 21:40:09] -rw-r--r--. 1 boinc boinc     21403 Nov 20 21:40 stderr.txt
[2025-11-20 21:40:09] HITS file was successfully produced:
[2025-11-20 21:40:09] -rw-------. 1 boinc boinc 923514163 Nov 20 21:35 shared/HITS.pool.root.1
[2025-11-20 21:40:09]  *** Contents of shared directory: ***
[2025-11-20 21:40:09] total 1316660
[2025-11-20 21:40:09] -rw-r--r--. 2 boinc boinc 409201777 Nov 19 19:48 ATLAS.root_0
[2025-11-20 21:40:09] -rw-r--r--. 2 boinc boinc     15120 Nov 19 19:48 start_atlas.sh
[2025-11-20 21:40:09] -rw-r--r--. 2 boinc boinc    590100 Nov 19 19:48 input.tar.gz
[2025-11-20 21:40:09] -rw-------. 1 boinc boinc 923514163 Nov 20 21:35 HITS.pool.root.1
[2025-11-20 21:40:09] -rw-------. 1 boinc boinc  14929920 Nov 20 21:40 result.tar.gz
21:40:10 (29469): run_atlas exited; CPU time 343489.946229
21:40:10 (29469): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN