Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
19:14:37 (17847): wrapper (7.7.26015): starting
19:14:37 (17847): wrapper: running run_atlas (--nthreads 8)
[2025-11-19 19:14:37] Arguments: --nthreads 8
[2025-11-19 19:14:37] Threads: 8
[2025-11-19 19:14:37] Checking for CVMFS
[2025-11-19 19:14:37] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-19 19:14:38] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-19 19:14:38] Running cvmfs_config stat atlas.cern.ch
[2025-11-19 19:14:39] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-19 19:14:39] 2.11.2.0 27053 162442 137184 153052 1 248 21826924 25165824 4251 130560 4 55072688 99.902 27434016 2726 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-19 19:14:39] CVMFS is ok
[2025-11-19 19:14:39] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-19 19:14:39] Checking for apptainer binary...
[2025-11-19 19:14:39] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-19 19:14:39] Running /usr/bin/apptainer --version
[2025-11-19 19:14:39] apptainer version 1.3.2-1.el7
[2025-11-19 19:14:39] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-19 19:14:59] cg-vwn373.simple-grid.lan
[2025-11-19 19:14:59] apptainer works
[2025-11-19 19:14:59] Set ATHENA_PROC_NUMBER=8
[2025-11-19 19:14:59] Set ATHENA_CORE_NUMBER=8
[2025-11-19 19:14:59] Starting ATLAS job with PandaID=6891570843
[2025-11-19 19:14:59] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/14 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-20 20:45:00]  *** The last 200 lines of the pilot log: ***
[2025-11-20 20:45:00] 2025-11-20 19:44:14,608 | INFO     | monitor loop #6163: job 0:6891570843 is in state 'finished'
[2025-11-20 20:45:00] 2025-11-20 19:44:14,609 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-20 20:45:00] 2025-11-20 19:44:15,500 | INFO     | time since job start (91509s) is within the limit (172800.0s)
[2025-11-20 20:45:00] 2025-11-20 19:44:17,113 | INFO     | monitor loop #6164: job 0:6891570843 is in state 'finished'
[2025-11-20 20:45:00] 2025-11-20 19:44:17,114 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-20 20:45:00] 2025-11-20 19:44:17,513 | INFO     | time since job start (91511s) is within the limit (172800.0s)
[2025-11-20 20:45:00] 2025-11-20 19:44:18,792 | INFO     | PID=21625 has CPU usage=1.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-20 20:45:00] 2025-11-20 19:44:18,793 | INFO     | .. there are 9 such processes running
[2025-11-20 20:45:00] 2025-11-20 19:44:19,619 | INFO     | monitor loop #6165: job 0:6891570843 is in state 'finished'
[2025-11-20 20:45:00] 2025-11-20 19:44:19,620 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-20 20:45:00] 2025-11-20 19:44:19,793 | INFO     | time since job start (91513s) is within the limit (172800.0s)
[2025-11-20 20:45:00] 2025-11-20 19:44:21,802 | INFO     | time since job start (91515s) is within the limit (172800.0s)
[2025-11-20 20:45:00] 2025-11-20 19:44:22,128 | INFO     | monitor loop #6166: job 0:6891570843 is in state 'finished'
[2025-11-20 20:45:00] 2025-11-20 19:44:22,129 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-20 20:45:00] 2025-11-20 19:44:22,660 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-20 20:45:00] 2025-11-20 19:44:22,661 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-11-20 20:45:00] 2025-11-20 19:44:22,663 | INFO     | using path: /var/lib/boinc/slots/14/PanDA_Pilot-6891570843/memory_monitor_summary.json (trf name=prmon)
[2025-11-20 20:45:00] 2025-11-20 19:44:22,664 | INFO     | extracted standard info from prmon json
[2025-11-20 20:45:00] 2025-11-20 19:44:22,664 | INFO     | extracted standard memory fields from prmon json
[2025-11-20 20:45:00] 2025-11-20 19:44:22,664 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-20 20:45:00] 2025-11-20 19:44:22,708 | INFO     | fitting pss+swap vs Time
[2025-11-20 20:45:00] 2025-11-20 19:44:22,711 | INFO     | sum of square deviations: 1025738876072.2971
[2025-11-20 20:45:00] 2025-11-20 19:44:22,792 | INFO     | sum of deviations: 3480490082370.285
[2025-11-20 20:45:00] 2025-11-20 19:44:22,793 | INFO     | mean x: 1763622310.6798658
[2025-11-20 20:45:00] 2025-11-20 19:44:22,793 | INFO     | mean y: 2842073.409395973
[2025-11-20 20:45:00] 2025-11-20 19:44:22,793 | INFO     | intersect: -5981400217.252887
[2025-11-20 20:45:00] 2025-11-20 19:44:22,795 | INFO     | chi2: 22.37826280923114
[2025-11-20 20:45:00] 2025-11-20 19:44:22,797 | INFO     | sum of square deviations: 1015447786732.8125
[2025-11-20 20:45:00] 2025-11-20 19:44:22,862 | INFO     | sum of deviations: 3969831213179.7915
[2025-11-20 20:45:00] 2025-11-20 19:44:22,863 | INFO     | mean x: 1763622158.1838384
[2025-11-20 20:45:00] 2025-11-20 19:44:22,863 | INFO     | mean y: 2849323.24983165
[2025-11-20 20:45:00] 2025-11-20 19:44:22,863 | INFO     | intersect: -6891923980.98891
[2025-11-20 20:45:00] 2025-11-20 19:44:22,866 | INFO     | chi2: 19.215938775751404
[2025-11-20 20:45:00] 2025-11-20 19:44:22,866 | INFO     | current chi2=19.215938775751404 (change=14.131231098846783 %)
[2025-11-20 20:45:00] 2025-11-20 19:44:22,866 | INFO     | right removable region: 1484
[2025-11-20 20:45:00] 2025-11-20 19:44:22,869 | INFO     | sum of square deviations: 1015446714352.8126
[2025-11-20 20:45:00] 2025-11-20 19:44:22,935 | INFO     | sum of deviations: 2867236252940.954
[2025-11-20 20:45:00] 2025-11-20 19:44:22,936 | INFO     | mean x: 1763622463.1838384
[2025-11-20 20:45:00] 2025-11-20 19:44:22,937 | INFO     | mean y: 2851159.531313131
[2025-11-20 20:45:00] 2025-11-20 19:44:22,937 | INFO     | intersect: -4976949544.402806
[2025-11-20 20:45:00] 2025-11-20 19:44:22,939 | INFO     | chi2: 17.868198006535255
[2025-11-20 20:45:00] 2025-11-20 19:44:22,939 | INFO     | current chi2=17.868198006535255 (change=20.153775300357363 %)
[2025-11-20 20:45:00] 2025-11-20 19:44:22,939 | INFO     | left removable region: 10
[2025-11-20 20:45:00] 2025-11-20 19:44:22,941 | INFO     | sum of square deviations: 993048048117.7795
[2025-11-20 20:45:00] 2025-11-20 19:44:23,002 | INFO     | sum of deviations: 2926252885947.3765
[2025-11-20 20:45:00] 2025-11-20 19:44:23,002 | INFO     | mean x: 1763622432.692673
[2025-11-20 20:45:00] 2025-11-20 19:44:23,003 | INFO     | mean y: 2867856.581411126
[2025-11-20 20:45:00] 2025-11-20 19:44:23,003 | INFO     | intersect: -5194066212.389614
[2025-11-20 20:45:00] 2025-11-20 19:44:23,005 | INFO     | chi2: 10.790776865788363
[2025-11-20 20:45:00] 2025-11-20 19:44:23,005 | INFO     | current memory leak: 2.95 B/s (using 1474 data points, chi2=10.79)
[2025-11-20 20:45:00] 2025-11-20 19:44:23,008 | INFO     | could have reported an average CPU frequency of 1999 MHz (50 samples)
[2025-11-20 20:45:00] 2025-11-20 19:44:23,008 | INFO     | ..............................
[2025-11-20 20:45:00] 2025-11-20 19:44:23,008 | INFO     | . Timing measurements:
[2025-11-20 20:45:00] 2025-11-20 19:44:23,008 | INFO     | . get job = 0 s
[2025-11-20 20:45:00] 2025-11-20 19:44:23,008 | INFO     | . initial setup = 9 s
[2025-11-20 20:45:00] 2025-11-20 19:44:23,008 | INFO     | . payload setup = 177 s
[2025-11-20 20:45:00] 2025-11-20 19:44:23,008 | INFO     | . stage-in = 0 s
[2025-11-20 20:45:00] 2025-11-20 19:44:23,009 | INFO     | . payload execution = 91020 s
[2025-11-20 20:45:00] 2025-11-20 19:44:23,009 | INFO     | . stage-out = 6 s
[2025-11-20 20:45:00] 2025-11-20 19:44:23,009 | INFO     | . log creation = 2 s
[2025-11-20 20:45:00] 2025-11-20 19:44:23,009 | INFO     | ..............................
[2025-11-20 20:45:00] 2025-11-20 19:44:23,147 | INFO     | 
[2025-11-20 20:45:00] 2025-11-20 19:44:23,148 | INFO     | job summary report
[2025-11-20 20:45:00] 2025-11-20 19:44:23,148 | INFO     | --------------------------------------------------
[2025-11-20 20:45:00] 2025-11-20 19:44:23,148 | INFO     | PanDA job id: 6891570843
[2025-11-20 20:45:00] 2025-11-20 19:44:23,148 | INFO     | task id: 47493068
[2025-11-20 20:45:00] 2025-11-20 19:44:23,148 | INFO     | errors: (none)
[2025-11-20 20:45:00] 2025-11-20 19:44:23,148 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-20 20:45:00] 2025-11-20 19:44:23,148 | INFO     | pilot state: finished 
[2025-11-20 20:45:00] 2025-11-20 19:44:23,148 | INFO     | transexitcode: 0
[2025-11-20 20:45:00] 2025-11-20 19:44:23,148 | INFO     | exeerrorcode: 0
[2025-11-20 20:45:00] 2025-11-20 19:44:23,148 | INFO     | exeerrordiag: 
[2025-11-20 20:45:00] 2025-11-20 19:44:23,148 | INFO     | exitcode: 0
[2025-11-20 20:45:00] 2025-11-20 19:44:23,149 | INFO     | exitmsg: OK
[2025-11-20 20:45:00] 2025-11-20 19:44:23,149 | INFO     | cpuconsumptiontime: 335683 s
[2025-11-20 20:45:00] 2025-11-20 19:44:23,149 | INFO     | nevents: 1000
[2025-11-20 20:45:00] 2025-11-20 19:44:23,149 | INFO     | neventsw: 0
[2025-11-20 20:45:00] 2025-11-20 19:44:23,149 | INFO     | pid: 28203
[2025-11-20 20:45:00] 2025-11-20 19:44:23,149 | INFO     | pgrp: 28203
[2025-11-20 20:45:00] 2025-11-20 19:44:23,149 | INFO     | corecount: 8
[2025-11-20 20:45:00] 2025-11-20 19:44:23,149 | INFO     | event service: False
[2025-11-20 20:45:00] 2025-11-20 19:44:23,149 | INFO     | sizes: {0: 2296974, 1: 2297058, 2: 2297257, 12: 2297257, 23: 2297285, 34: 2297313, 45: 2297469, 55: 2297497, 66: 2297525, 77: 2297553, 88: 2297609, 98: 2297917, 10
[2025-11-20 20:45:00] 2025-11-20 19:44:23,149 | INFO     | --------------------------------------------------
[2025-11-20 20:45:00] 2025-11-20 19:44:23,149 | INFO     | 
[2025-11-20 20:45:00] 2025-11-20 19:44:23,149 | INFO     | executing command: ls -lF /var/lib/boinc/slots/14
[2025-11-20 20:45:00] 2025-11-20 19:44:23,699 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-20 20:45:00] 2025-11-20 19:44:23,699 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-20 20:45:00] 2025-11-20 19:44:23,700 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-20 20:45:00] 2025-11-20 19:44:23,700 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-20 20:45:00] 2025-11-20 19:44:23,700 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-20 20:45:00] 2025-11-20 19:44:23,700 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-20 20:45:00] 2025-11-20 19:44:23,700 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-20 20:45:00] 2025-11-20 19:44:23,700 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-20 20:45:00] 2025-11-20 19:44:23,700 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-20 20:45:00] 2025-11-20 19:44:23,700 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-20 20:45:00] 2025-11-20 19:44:23,700 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-20 20:45:00] 2025-11-20 19:44:23,700 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-20 20:45:00] 2025-11-20 19:44:23,700 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-20 20:45:00] 2025-11-20 19:44:23,700 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-20 20:45:00] 2025-11-20 19:44:23,701 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-20 20:45:00] 2025-11-20 19:44:23,701 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-20 20:45:00] 2025-11-20 19:44:23,701 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-20 20:45:00] 2025-11-20 19:44:23,701 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-20 20:45:00] 2025-11-20 19:44:23,701 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-20 20:45:00] 2025-11-20 19:44:23,701 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-20 20:45:00] 2025-11-20 19:44:23,701 | INFO     | job 6891570843 has completed (purged errors)
[2025-11-20 20:45:00] 2025-11-20 19:44:23,701 | INFO     | overall cleanup function is called
[2025-11-20 20:45:00] 2025-11-20 19:44:24,725 | INFO     | --- collectZombieJob: --- 10, [28203]
[2025-11-20 20:45:00] 2025-11-20 19:44:24,726 | INFO     | zombie collector waiting for pid 28203
[2025-11-20 20:45:00] 2025-11-20 19:44:24,726 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-20 20:45:00] 2025-11-20 19:44:24,726 | INFO     | collected zombie processes
[2025-11-20 20:45:00] 2025-11-20 19:44:24,726 | INFO     | will attempt to kill all subprocesses of pid=28203
[2025-11-20 20:45:00] 2025-11-20 19:44:24,867 | INFO     | process IDs to be killed: [28203] (in reverse order)
[2025-11-20 20:45:00] 2025-11-20 19:44:26,037 | WARNING  | found no corresponding commands to process id(s)
[2025-11-20 20:45:00] 2025-11-20 19:44:26,037 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-20 20:45:00] 2025-11-20 19:44:26,041 | INFO     | did not find any defunct processes belonging to 28203
[2025-11-20 20:45:00] 2025-11-20 19:44:26,045 | INFO     | did not find any defunct processes belonging to 28203
[2025-11-20 20:45:00] 2025-11-20 19:44:26,058 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-20 20:45:00] 2025-11-20 19:44:26,058 | INFO     | ready for new job
[2025-11-20 20:45:00] 2025-11-20 19:44:26,058 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-20 20:45:00] 2025-11-20 19:44:26,065 | INFO     | ***************************************
[2025-11-20 20:45:00] 2025-11-20 19:44:26,066 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-20 20:45:00] 2025-11-20 19:44:26,066 | INFO     | ***************************************
[2025-11-20 20:45:00] 2025-11-20 19:44:26,066 | INFO     | 
[2025-11-20 20:45:00] 2025-11-20 19:44:26,066 | INFO     | pilot is running in a VM
[2025-11-20 20:45:00] 2025-11-20 19:44:26,066 | INFO     | architecture information:
[2025-11-20 20:45:00] 2025-11-20 19:44:26,071 | INFO     | executing command: cat /etc/os-release
[2025-11-20 20:45:00] 2025-11-20 19:44:26,208 | INFO     | cat /etc/os-release:
[2025-11-20 20:45:00] NAME="CentOS Linux"
[2025-11-20 20:45:00] VERSION="7 (Core)"
[2025-11-20 20:45:00] ID="centos"
[2025-11-20 20:45:00] ID_LIKE="rhel fedora"
[2025-11-20 20:45:00] VERSION_ID="7"
[2025-11-20 20:45:00] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-20 20:45:00] ANSI_COLOR="0;31"
[2025-11-20 20:45:00] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-20 20:45:00] HOME_URL="https://www.centos.org/"
[2025-11-20 20:45:00] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-20 20:45:00] 
[2025-11-20 20:45:00] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-20 20:45:00] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-20 20:45:00] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-20 20:45:00] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-20 20:45:00] 
[2025-11-20 20:45:00] 2025-11-20 19:44:26,209 | INFO     | ***************************************
[2025-11-20 20:45:00] 2025-11-20 19:44:26,713 | INFO     | executing command: df -mP /var/lib/boinc/slots/14
[2025-11-20 20:45:00] 2025-11-20 19:44:27,091 | INFO     | sufficient remaining disk space (494830354432 B)
[2025-11-20 20:45:00] 2025-11-20 19:44:27,091 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-20 20:45:00] 2025-11-20 19:44:27,092 | INFO     | current server update state: UPDATING_FINAL
[2025-11-20 20:45:00] 2025-11-20 19:44:27,092 | INFO     | update_server=False
[2025-11-20 20:45:00] 2025-11-20 19:44:27,092 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-20 20:45:00] 2025-11-20 19:44:27,157 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-20 20:45:00] 2025-11-20 19:44:27,158 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-20 20:45:00] 2025-11-20 19:44:27,158 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-20 20:45:00] 2025-11-20 19:44:27,158 | INFO     | will abort loop
[2025-11-20 20:45:00] 2025-11-20 19:44:27,199 | INFO     | all payload control threads have been joined
[2025-11-20 20:45:00] 2025-11-20 19:44:27,277 | INFO     | all job control threads have been joined
[2025-11-20 20:45:00] 2025-11-20 19:44:27,804 | INFO     | all data control threads have been joined
[2025-11-20 20:45:00] 2025-11-20 19:44:28,098 | INFO     | [job] retrieve thread has finished
[2025-11-20 20:45:00] 2025-11-20 19:44:28,152 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-20 20:45:00] 2025-11-20 19:44:28,161 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-20 20:45:00] 2025-11-20 19:44:28,164 | INFO     | [job] job monitor thread has finished
[2025-11-20 20:45:00] 2025-11-20 19:44:28,206 | INFO     | [payload] control thread has finished
[2025-11-20 20:45:00] 2025-11-20 19:44:28,283 | INFO     | [job] control thread has finished
[2025-11-20 20:45:00] 2025-11-20 19:44:28,285 | INFO     | [data] copytool_in thread has finished
[2025-11-20 20:45:00] 2025-11-20 19:44:28,811 | INFO     | [data] control thread has finished
[2025-11-20 20:45:00] 2025-11-20 19:44:28,875 | INFO     | [payload] failed_post thread has finished
[2025-11-20 20:45:00] 2025-11-20 19:44:28,945 | INFO     | [payload] validate_pre thread has finished
[2025-11-20 20:45:00] 2025-11-20 19:44:28,964 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-20 20:45:00] 2025-11-20 19:44:29,168 | INFO     | [job] queue monitor thread has finished
[2025-11-20 20:45:00] 2025-11-20 19:44:29,228 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-20 20:45:00] 2025-11-20 19:44:29,269 | INFO     | [payload] execute_payloads thread has finished
[2025-11-20 20:45:00] 2025-11-20 19:44:29,300 | INFO     | [payload] validate_post thread has finished
[2025-11-20 20:45:00] 2025-11-20 19:44:29,445 | INFO     | [job] create_data_payload thread has finished
[2025-11-20 20:45:00] 2025-11-20 19:44:29,480 | INFO     | [job] validate thread has finished
[2025-11-20 20:45:00] 2025-11-20 19:44:30,160 | INFO     | [data] copytool_out thread has finished
[2025-11-20 20:45:00] 2025-11-20 19:44:33,238 | INFO     | [data] queue_monitor thread has finished
[2025-11-20 20:45:00] 2025-11-20 19:44:45,908 | INFO     | [monitor] cgroup control has ended
[2025-11-20 20:45:00] 2025-11-20 19:44:47,333 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140190083385152)>', '<ExcThread(monitor, started 140189636732672)>']
[2025-11-20 20:45:00] 2025-11-20 19:44:52,358 | INFO     | all workflow threads have been joined
[2025-11-20 20:45:00] 2025-11-20 19:44:52,359 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-20 20:45:00] 2025-11-20 19:44:52,359 | INFO     | traces error code: 0
[2025-11-20 20:45:00] 2025-11-20 19:44:52,359 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-20 20:45:00] 2025-11-20 19:44:55,047 | INFO     | PID=21625 has CPU usage=2.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-20 20:45:00] 2025-11-20 19:44:55,048 | INFO     | .. there are 9 such processes running
[2025-11-20 20:45:00] 2025-11-20 19:44:55,048 | INFO     | found 0 job(s) in 20 queues
[2025-11-20 20:45:00] 2025-11-20 19:44:55,048 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-20 20:45:00] 2025-11-20 19:44:55,048 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-20 20:45:00] 2025-11-20 19:44:55,048 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-20 20:45:00] 2025-11-20 19:44:55,048 | INFO     | [monitor] control thread has ended
[2025-11-20 20:45:00] 2025-11-20 19:44:55,463 [wrapper] ==== pilot stdout END ====
[2025-11-20 20:45:00] 2025-11-20 19:44:55,522 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-20 20:45:00] 2025-11-20 19:44:55,617 [wrapper] pilotpid: 21625
[2025-11-20 20:45:00] 2025-11-20 19:44:55,695 [wrapper] Pilot exit status: 0
[2025-11-20 20:45:00] 2025-11-20 19:44:56,120 [wrapper] pandaids: 6891570843
[2025-11-20 20:45:00] 2025-11-20 19:44:56,939 [wrapper] cleanup supervisor_pilot 31772 21626
[2025-11-20 20:45:00] 2025-11-20 19:44:57,083 [wrapper] Test setup, not cleaning
[2025-11-20 20:45:00] 2025-11-20 19:44:57,201 [wrapper] apfmon messages muted
[2025-11-20 20:45:00] 2025-11-20 19:44:57,304 [wrapper] ==== wrapper stdout END ====
[2025-11-20 20:45:00] 2025-11-20 19:44:57,391 [wrapper] ==== wrapper stderr END ====
[2025-11-20 20:45:00]  *** Error codes and diagnostics ***
[2025-11-20 20:45:00]     "exeErrorCode": 0,
[2025-11-20 20:45:00]     "exeErrorDiag": "",
[2025-11-20 20:45:00]     "pilotErrorCode": 0,
[2025-11-20 20:45:00]     "pilotErrorDiag": "",
[2025-11-20 20:45:00]  *** Listing of results directory ***
[2025-11-20 20:45:00] total 1324228
[2025-11-20 20:45:00] -rw-r--r--. 1 boinc boinc    576529 Nov 18 16:15 pilot3.tar.gz
[2025-11-20 20:45:00] -rw-r--r--. 1 boinc boinc      5112 Nov 18 16:39 queuedata.json
[2025-11-20 20:45:00] -rwx------. 1 boinc boinc     36292 Nov 18 16:40 runpilot2-wrapper.sh
[2025-11-20 20:45:00] -rw-r--r--. 1 boinc boinc       100 Nov 19 19:14 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-20 20:45:00] -rwxr-xr-x. 1 boinc boinc      7986 Nov 19 19:14 run_atlas
[2025-11-20 20:45:00] -rw-r--r--. 1 boinc boinc       105 Nov 19 19:14 job.xml
[2025-11-20 20:45:00] -rw-r--r--. 1 boinc boinc      6392 Nov 19 19:14 init_data.xml
[2025-11-20 20:45:00] -rw-r--r--. 2 boinc boinc 409098875 Nov 19 19:14 EVNT.47493065._000254.pool.root.1
[2025-11-20 20:45:00] -rw-r--r--. 2 boinc boinc     15120 Nov 19 19:14 start_atlas.sh
[2025-11-20 20:45:00] drwxrwx--x. 2 boinc boinc        68 Nov 19 19:14 shared
[2025-11-20 20:45:00] -rw-r--r--. 2 boinc boinc    590099 Nov 19 19:14 input.tar.gz
[2025-11-20 20:45:00] -rw-r--r--. 1 boinc boinc         0 Nov 19 19:14 boinc_lockfile
[2025-11-20 20:45:00] -rw-r--r--. 1 boinc boinc      2773 Nov 19 19:14 pandaJob.out
[2025-11-20 20:45:00] -rw-------. 1 boinc boinc    989434 Nov 19 19:18 agis_schedconf.cvmfs.json
[2025-11-20 20:45:00] drwx------. 5 boinc boinc      4096 Nov 19 19:19 pilot3
[2025-11-20 20:45:00] -rw-r--r--. 1 boinc boinc       533 Nov 20 20:16 boinc_task_state.xml
[2025-11-20 20:45:00] -rw-------. 1 boinc boinc 913529172 Nov 20 20:40 HITS.47493068._002532.pool.root.1
[2025-11-20 20:45:00] -rw-------. 1 boinc boinc      1033 Nov 20 20:42 memory_monitor_summary.json
[2025-11-20 20:45:00] -rw-------. 1 boinc boinc   1526164 Nov 20 20:42 agis_ddmendpoints.agis.ALL.json
[2025-11-20 20:45:00] -rw-------. 1 boinc boinc   2551961 Nov 20 20:42 log.47493068._002532.job.log.tgz.1
[2025-11-20 20:45:00] -rw-------. 1 boinc boinc        95 Nov 20 20:44 pilot_heartbeat.json
[2025-11-20 20:45:00] -rw-------. 1 boinc boinc      7938 Nov 20 20:44 heartbeat.json
[2025-11-20 20:45:00] -rw-------. 1 boinc boinc       820 Nov 20 20:44 pilotlog.txt
[2025-11-20 20:45:00] -rw-------. 1 boinc boinc  12186277 Nov 20 20:44 log.47493068._002532.job.log.1
[2025-11-20 20:45:00] -rw-r--r--. 1 boinc boinc      8192 Nov 20 20:44 boinc_mmap_file
[2025-11-20 20:45:00] -rw-r--r--. 1 boinc boinc        29 Nov 20 20:44 wrapper_checkpoint.txt
[2025-11-20 20:45:00] -rw-------. 1 boinc boinc       353 Nov 20 20:44 output.list
[2025-11-20 20:45:00] -rw-r--r--. 1 boinc boinc       620 Nov 20 20:44 runtime_log
[2025-11-20 20:45:00] -rw-------. 1 boinc boinc  14755840 Nov 20 20:44 result.tar.gz
[2025-11-20 20:45:00] -rw-------. 1 boinc boinc       662 Nov 20 20:44 uWSLDmkzcf8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmmOFKDmsGaLbm.diag
[2025-11-20 20:45:00] -rw-r--r--. 1 boinc boinc      8717 Nov 20 20:44 runtime_log.err
[2025-11-20 20:45:00] -rw-r--r--. 1 boinc boinc     21496 Nov 20 20:45 stderr.txt
[2025-11-20 20:45:00] HITS file was successfully produced:
[2025-11-20 20:45:00] -rw-------. 1 boinc boinc 913529172 Nov 20 20:40 shared/HITS.pool.root.1
[2025-11-20 20:45:00]  *** Contents of shared directory: ***
[2025-11-20 20:45:00] total 1306640
[2025-11-20 20:45:00] -rw-r--r--. 2 boinc boinc 409098875 Nov 19 19:14 ATLAS.root_0
[2025-11-20 20:45:00] -rw-r--r--. 2 boinc boinc     15120 Nov 19 19:14 start_atlas.sh
[2025-11-20 20:45:00] -rw-r--r--. 2 boinc boinc    590099 Nov 19 19:14 input.tar.gz
[2025-11-20 20:45:00] -rw-------. 1 boinc boinc 913529172 Nov 20 20:40 HITS.pool.root.1
[2025-11-20 20:45:00] -rw-------. 1 boinc boinc  14755840 Nov 20 20:44 result.tar.gz
20:45:01 (17847): run_atlas exited; CPU time 336321.244376
20:45:01 (17847): called boinc_finish(0)

</stderr_txt>
]]>

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