Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
20:44:09 (4786): wrapper (7.7.26015): starting
20:44:09 (4786): wrapper: running run_atlas (--nthreads 8)
[2025-11-20 20:44:09] Arguments: --nthreads 8
[2025-11-20 20:44:09] Threads: 8
[2025-11-20 20:44:09] Checking for CVMFS
[2025-11-20 20:44:10] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-20 20:44:11] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-20 20:44:11] Running cvmfs_config stat atlas.cern.ch
[2025-11-20 20:44:12] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-20 20:44:12] 2.11.2.0 16343 277003 139664 153088 3 307 13119340 25165825 4596 130560 3 136668704 99.871 75131599 2916 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-20 20:44:12] CVMFS is ok
[2025-11-20 20:44:12] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-20 20:44:12] Checking for apptainer binary...
[2025-11-20 20:44:12] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-20 20:44:12] Running /usr/bin/apptainer --version
[2025-11-20 20:44:12] apptainer version 1.3.2-1.el7
[2025-11-20 20:44:12] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-20 20:44:20] cg-vwn436.simple-grid.lan
[2025-11-20 20:44:20] apptainer works
[2025-11-20 20:44:20] Set ATHENA_PROC_NUMBER=8
[2025-11-20 20:44:20] Set ATHENA_CORE_NUMBER=8
[2025-11-20 20:44:20] Starting ATLAS job with PandaID=6891570706
[2025-11-20 20:44:20] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/8 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-21 21:15:30]  *** The last 200 lines of the pilot log: ***
[2025-11-21 21:15:30] 2025-11-21 20:14:43,608 | INFO     | time since job start (88027s) is within the limit (172800.0s)
[2025-11-21 21:15:30] 2025-11-21 20:14:45,463 | INFO     | monitor loop #5910: job 0:6891570706 is in state 'finished'
[2025-11-21 21:15:30] 2025-11-21 20:14:45,463 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-21 21:15:30] 2025-11-21 20:14:45,614 | INFO     | time since job start (88029s) is within the limit (172800.0s)
[2025-11-21 21:15:30] 2025-11-21 20:14:47,622 | INFO     | time since job start (88031s) is within the limit (172800.0s)
[2025-11-21 21:15:30] 2025-11-21 20:14:47,969 | INFO     | monitor loop #5911: job 0:6891570706 is in state 'finished'
[2025-11-21 21:15:30] 2025-11-21 20:14:47,969 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-21 21:15:30] 2025-11-21 20:14:49,629 | INFO     | time since job start (88033s) is within the limit (172800.0s)
[2025-11-21 21:15:30] 2025-11-21 20:14:50,474 | INFO     | monitor loop #5912: job 0:6891570706 is in state 'finished'
[2025-11-21 21:15:30] 2025-11-21 20:14:50,474 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-21 21:15:30] 2025-11-21 20:14:51,638 | INFO     | time since job start (88035s) is within the limit (172800.0s)
[2025-11-21 21:15:30] 2025-11-21 20:14:52,982 | INFO     | monitor loop #5913: job 0:6891570706 is in state 'finished'
[2025-11-21 21:15:30] 2025-11-21 20:14:52,982 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-21 21:15:30] 2025-11-21 20:14:53,187 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-21 21:15:30] 2025-11-21 20:14:53,188 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-11-21 21:15:30] 2025-11-21 20:14:53,191 | INFO     | using path: /var/lib/boinc/slots/8/PanDA_Pilot-6891570706/memory_monitor_summary.json (trf name=prmon)
[2025-11-21 21:15:30] 2025-11-21 20:14:53,192 | INFO     | extracted standard info from prmon json
[2025-11-21 21:15:30] 2025-11-21 20:14:53,192 | INFO     | extracted standard memory fields from prmon json
[2025-11-21 21:15:30] 2025-11-21 20:14:53,192 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-21 21:15:30] 2025-11-21 20:14:53,220 | INFO     | fitting pss+swap vs Time
[2025-11-21 21:15:30] 2025-11-21 20:14:53,223 | INFO     | sum of square deviations: 918207568332.6473
[2025-11-21 21:15:30] 2025-11-21 20:14:53,281 | INFO     | sum of deviations: 2659701197188.7446
[2025-11-21 21:15:30] 2025-11-21 20:14:53,281 | INFO     | mean x: 1763712304.6796658
[2025-11-21 21:15:30] 2025-11-21 20:14:53,281 | INFO     | mean y: 2865781.4603064065
[2025-11-21 21:15:30] 2025-11-21 20:14:53,281 | INFO     | intersect: -5105943914.773427
[2025-11-21 21:15:30] 2025-11-21 20:14:53,283 | INFO     | chi2: 20.134822478904027
[2025-11-21 21:15:30] 2025-11-21 20:14:53,286 | INFO     | sum of square deviations: 908650119740.6641
[2025-11-21 21:15:30] 2025-11-21 20:14:53,345 | INFO     | sum of deviations: 3138622570470.1074
[2025-11-21 21:15:30] 2025-11-21 20:14:53,345 | INFO     | mean x: 1763712152.1837876
[2025-11-21 21:15:30] 2025-11-21 20:14:53,345 | INFO     | mean y: 2873422.185883997
[2025-11-21 21:15:30] 2025-11-21 20:14:53,345 | INFO     | intersect: -6089269910.4275055
[2025-11-21 21:15:30] 2025-11-21 20:14:53,347 | INFO     | chi2: 17.003026956848636
[2025-11-21 21:15:30] 2025-11-21 20:14:53,347 | INFO     | current chi2=17.003026956848636 (change=15.554125323611299 %)
[2025-11-21 21:15:30] 2025-11-21 20:14:53,347 | INFO     | right removable region: 1430
[2025-11-21 21:15:30] 2025-11-21 20:14:53,350 | INFO     | sum of square deviations: 908649086400.6641
[2025-11-21 21:15:30] 2025-11-21 20:14:53,406 | INFO     | sum of deviations: 2062260336060.379
[2025-11-21 21:15:30] 2025-11-21 20:14:53,407 | INFO     | mean x: 1763712457.1837876
[2025-11-21 21:15:30] 2025-11-21 20:14:53,407 | INFO     | mean y: 2875312.8008385743
[2025-11-21 21:15:30] 2025-11-21 20:14:53,407 | INFO     | intersect: -4000027787.0894694
[2025-11-21 21:15:30] 2025-11-21 20:14:53,409 | INFO     | chi2: 15.558697604079919
[2025-11-21 21:15:30] 2025-11-21 20:14:53,409 | INFO     | current chi2=15.558697604079919 (change=22.727416045602975 %)
[2025-11-21 21:15:30] 2025-11-21 20:14:53,409 | INFO     | left removable region: 10
[2025-11-21 21:15:30] 2025-11-21 20:14:53,411 | INFO     | sum of square deviations: 887855627754.1298
[2025-11-21 21:15:30] 2025-11-21 20:14:53,480 | INFO     | sum of deviations: 2107747717452.6672
[2025-11-21 21:15:30] 2025-11-21 20:14:53,481 | INFO     | mean x: 1763712426.6929576
[2025-11-21 21:15:30] 2025-11-21 20:14:53,481 | INFO     | mean y: 2892936.3661971833
[2025-11-21 21:15:30] 2025-11-21 20:14:53,481 | INFO     | intersect: -4184117570.069932
[2025-11-21 21:15:30] 2025-11-21 20:14:53,483 | INFO     | chi2: 8.403965004409322
[2025-11-21 21:15:30] 2025-11-21 20:14:53,483 | INFO     | current memory leak: 2.37 B/s (using 1420 data points, chi2=8.40)
[2025-11-21 21:15:30] 2025-11-21 20:14:53,486 | INFO     | could have reported an average CPU frequency of 1999 MHz (49 samples)
[2025-11-21 21:15:30] 2025-11-21 20:14:53,487 | INFO     | ..............................
[2025-11-21 21:15:30] 2025-11-21 20:14:53,487 | INFO     | . Timing measurements:
[2025-11-21 21:15:30] 2025-11-21 20:14:53,487 | INFO     | . get job = 0 s
[2025-11-21 21:15:30] 2025-11-21 20:14:53,487 | INFO     | . initial setup = 10 s
[2025-11-21 21:15:30] 2025-11-21 20:14:53,487 | INFO     | . payload setup = 147 s
[2025-11-21 21:15:30] 2025-11-21 20:14:53,487 | INFO     | . stage-in = 0 s
[2025-11-21 21:15:30] 2025-11-21 20:14:53,487 | INFO     | . payload execution = 87692 s
[2025-11-21 21:15:30] 2025-11-21 20:14:53,488 | INFO     | . stage-out = 4 s
[2025-11-21 21:15:30] 2025-11-21 20:14:53,488 | INFO     | . log creation = 1 s
[2025-11-21 21:15:30] 2025-11-21 20:14:53,488 | INFO     | ..............................
[2025-11-21 21:15:30] 2025-11-21 20:14:53,647 | INFO     | time since job start (88037s) is within the limit (172800.0s)
[2025-11-21 21:15:30] 2025-11-21 20:14:54,011 | INFO     | 
[2025-11-21 21:15:30] 2025-11-21 20:14:54,011 | INFO     | job summary report
[2025-11-21 21:15:30] 2025-11-21 20:14:54,011 | INFO     | --------------------------------------------------
[2025-11-21 21:15:30] 2025-11-21 20:14:54,011 | INFO     | PanDA job id: 6891570706
[2025-11-21 21:15:30] 2025-11-21 20:14:54,012 | INFO     | task id: 47493068
[2025-11-21 21:15:30] 2025-11-21 20:14:54,012 | INFO     | errors: (none)
[2025-11-21 21:15:30] 2025-11-21 20:14:54,012 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-21 21:15:30] 2025-11-21 20:14:54,012 | INFO     | pilot state: finished 
[2025-11-21 21:15:30] 2025-11-21 20:14:54,012 | INFO     | transexitcode: 0
[2025-11-21 21:15:30] 2025-11-21 20:14:54,012 | INFO     | exeerrorcode: 0
[2025-11-21 21:15:30] 2025-11-21 20:14:54,012 | INFO     | exeerrordiag: 
[2025-11-21 21:15:30] 2025-11-21 20:14:54,012 | INFO     | exitcode: 0
[2025-11-21 21:15:30] 2025-11-21 20:14:54,012 | INFO     | exitmsg: OK
[2025-11-21 21:15:30] 2025-11-21 20:14:54,012 | INFO     | cpuconsumptiontime: 340050 s
[2025-11-21 21:15:30] 2025-11-21 20:14:54,012 | INFO     | nevents: 1000
[2025-11-21 21:15:30] 2025-11-21 20:14:54,013 | INFO     | neventsw: 0
[2025-11-21 21:15:30] 2025-11-21 20:14:54,013 | INFO     | pid: 15122
[2025-11-21 21:15:30] 2025-11-21 20:14:54,013 | INFO     | pgrp: 15122
[2025-11-21 21:15:30] 2025-11-21 20:14:54,013 | INFO     | corecount: 8
[2025-11-21 21:15:30] 2025-11-21 20:14:54,013 | INFO     | event service: False
[2025-11-21 21:15:30] 2025-11-21 20:14:54,013 | INFO     | sizes: {0: 2298625, 1: 2298824, 12: 2298824, 23: 2298852, 33: 2298880, 44: 2298936, 55: 2299092, 66: 2299120, 77: 2299148, 87: 2299494, 87839: 2362404, 87840: 2362
[2025-11-21 21:15:30] 2025-11-21 20:14:54,013 | INFO     | --------------------------------------------------
[2025-11-21 21:15:30] 2025-11-21 20:14:54,013 | INFO     | 
[2025-11-21 21:15:30] 2025-11-21 20:14:54,013 | INFO     | executing command: ls -lF /var/lib/boinc/slots/8
[2025-11-21 21:15:30] 2025-11-21 20:14:54,065 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-21 21:15:30] 2025-11-21 20:14:54,065 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-21 21:15:30] 2025-11-21 20:14:54,065 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-21 21:15:30] 2025-11-21 20:14:54,065 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-21 21:15:30] 2025-11-21 20:14:54,065 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-21 21:15:30] 2025-11-21 20:14:54,065 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-21 21:15:30] 2025-11-21 20:14:54,065 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-21 21:15:30] 2025-11-21 20:14:54,066 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-21 21:15:30] 2025-11-21 20:14:54,066 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-21 21:15:30] 2025-11-21 20:14:54,066 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-21 21:15:30] 2025-11-21 20:14:54,066 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-21 21:15:30] 2025-11-21 20:14:54,066 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-21 21:15:30] 2025-11-21 20:14:54,066 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-21 21:15:30] 2025-11-21 20:14:54,066 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-21 21:15:30] 2025-11-21 20:14:54,066 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-21 21:15:30] 2025-11-21 20:14:54,066 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-21 21:15:30] 2025-11-21 20:14:54,066 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-21 21:15:30] 2025-11-21 20:14:54,066 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-21 21:15:30] 2025-11-21 20:14:54,067 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-21 21:15:30] 2025-11-21 20:14:54,067 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-21 21:15:30] 2025-11-21 20:14:54,067 | INFO     | job 6891570706 has completed (purged errors)
[2025-11-21 21:15:30] 2025-11-21 20:14:54,067 | INFO     | overall cleanup function is called
[2025-11-21 21:15:30] 2025-11-21 20:14:55,086 | INFO     | --- collectZombieJob: --- 10, [15122]
[2025-11-21 21:15:30] 2025-11-21 20:14:55,086 | INFO     | zombie collector waiting for pid 15122
[2025-11-21 21:15:30] 2025-11-21 20:14:55,086 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-21 21:15:30] 2025-11-21 20:14:55,087 | INFO     | collected zombie processes
[2025-11-21 21:15:30] 2025-11-21 20:14:55,087 | INFO     | will attempt to kill all subprocesses of pid=15122
[2025-11-21 21:15:30] 2025-11-21 20:14:55,193 | INFO     | process IDs to be killed: [15122] (in reverse order)
[2025-11-21 21:15:30] 2025-11-21 20:14:55,266 | WARNING  | found no corresponding commands to process id(s)
[2025-11-21 21:15:30] 2025-11-21 20:14:55,266 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-21 21:15:30] 2025-11-21 20:14:55,270 | INFO     | did not find any defunct processes belonging to 15122
[2025-11-21 21:15:30] 2025-11-21 20:14:55,274 | INFO     | did not find any defunct processes belonging to 15122
[2025-11-21 21:15:30] 2025-11-21 20:14:55,276 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-21 21:15:30] 2025-11-21 20:14:55,276 | INFO     | ready for new job
[2025-11-21 21:15:30] 2025-11-21 20:14:55,276 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-21 21:15:30] 2025-11-21 20:14:55,283 | INFO     | ***************************************
[2025-11-21 21:15:30] 2025-11-21 20:14:55,283 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-21 21:15:30] 2025-11-21 20:14:55,283 | INFO     | ***************************************
[2025-11-21 21:15:30] 2025-11-21 20:14:55,283 | INFO     | 
[2025-11-21 21:15:30] 2025-11-21 20:14:55,284 | INFO     | pilot is running in a VM
[2025-11-21 21:15:30] 2025-11-21 20:14:55,284 | INFO     | architecture information:
[2025-11-21 21:15:30] 2025-11-21 20:14:55,284 | INFO     | executing command: cat /etc/os-release
[2025-11-21 21:15:30] 2025-11-21 20:14:55,316 | INFO     | cat /etc/os-release:
[2025-11-21 21:15:30] NAME="CentOS Linux"
[2025-11-21 21:15:30] VERSION="7 (Core)"
[2025-11-21 21:15:30] ID="centos"
[2025-11-21 21:15:30] ID_LIKE="rhel fedora"
[2025-11-21 21:15:30] VERSION_ID="7"
[2025-11-21 21:15:30] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-21 21:15:30] ANSI_COLOR="0;31"
[2025-11-21 21:15:30] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-21 21:15:30] HOME_URL="https://www.centos.org/"
[2025-11-21 21:15:30] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-21 21:15:30] 
[2025-11-21 21:15:30] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-21 21:15:30] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-21 21:15:30] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-21 21:15:30] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-21 21:15:30] 
[2025-11-21 21:15:30] 2025-11-21 20:14:55,317 | INFO     | ***************************************
[2025-11-21 21:15:30] 2025-11-21 20:14:55,820 | INFO     | executing command: df -mP /var/lib/boinc/slots/8
[2025-11-21 21:15:30] 2025-11-21 20:14:55,862 | INFO     | sufficient remaining disk space (494787362816 B)
[2025-11-21 21:15:30] 2025-11-21 20:14:55,862 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-21 21:15:30] 2025-11-21 20:14:55,862 | INFO     | current server update state: UPDATING_FINAL
[2025-11-21 21:15:30] 2025-11-21 20:14:55,863 | INFO     | update_server=False
[2025-11-21 21:15:30] 2025-11-21 20:14:55,863 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-21 21:15:30] 2025-11-21 20:14:55,940 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-21 21:15:30] 2025-11-21 20:14:56,495 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-21 21:15:30] 2025-11-21 20:14:56,495 | INFO     | aborting loop
[2025-11-21 21:15:30] 2025-11-21 20:14:56,726 | INFO     | all data control threads have been joined
[2025-11-21 21:15:30] 2025-11-21 20:14:56,868 | INFO     | [job] retrieve thread has finished
[2025-11-21 21:15:30] 2025-11-21 20:14:57,105 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-21 21:15:30] 2025-11-21 20:14:57,262 | INFO     | all payload control threads have been joined
[2025-11-21 21:15:30] 2025-11-21 20:14:57,501 | INFO     | [job] job monitor thread has finished
[2025-11-21 21:15:30] 2025-11-21 20:14:57,520 | INFO     | all job control threads have been joined
[2025-11-21 21:15:30] 2025-11-21 20:14:57,521 | INFO     | [data] copytool_in thread has finished
[2025-11-21 21:15:30] 2025-11-21 20:14:57,694 | INFO     | [payload] execute_payloads thread has finished
[2025-11-21 21:15:30] 2025-11-21 20:14:57,731 | INFO     | [data] control thread has finished
[2025-11-21 21:15:30] 2025-11-21 20:14:57,809 | INFO     | [payload] failed_post thread has finished
[2025-11-21 21:15:30] 2025-11-21 20:14:57,857 | INFO     | [payload] validate_pre thread has finished
[2025-11-21 21:15:30] 2025-11-21 20:14:57,894 | INFO     | [job] create_data_payload thread has finished
[2025-11-21 21:15:30] 2025-11-21 20:14:57,948 | INFO     | [data] copytool_out thread has finished
[2025-11-21 21:15:30] 2025-11-21 20:14:57,961 | INFO     | [job] validate thread has finished
[2025-11-21 21:15:30] 2025-11-21 20:14:58,103 | INFO     | [payload] validate_post thread has finished
[2025-11-21 21:15:30] 2025-11-21 20:14:58,270 | INFO     | [payload] control thread has finished
[2025-11-21 21:15:30] 2025-11-21 20:14:58,531 | INFO     | [job] control thread has finished
[2025-11-21 21:15:30] 2025-11-21 20:14:58,627 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-21 21:15:30] 2025-11-21 20:14:59,632 | INFO     | [job] queue monitor thread has finished
[2025-11-21 21:15:30] 2025-11-21 20:15:01,114 | INFO     | [data] queue_monitor thread has finished
[2025-11-21 21:15:30] 2025-11-21 20:15:06,820 | INFO     | job.realtimelogging is not enabled
[2025-11-21 21:15:30] 2025-11-21 20:15:07,825 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-21 21:15:30] 2025-11-21 20:15:09,568 | INFO     | [monitor] cgroup control has ended
[2025-11-21 21:15:30] 2025-11-21 20:15:10,455 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139965944280896)>', '<ExcThread(monitor, started 139965132437248)>']
[2025-11-21 21:15:30] 2025-11-21 20:15:15,481 | INFO     | all workflow threads have been joined
[2025-11-21 21:15:30] 2025-11-21 20:15:15,481 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-21 21:15:30] 2025-11-21 20:15:15,482 | INFO     | traces error code: 0
[2025-11-21 21:15:30] 2025-11-21 20:15:15,482 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-21 21:15:30] 2025-11-21 20:15:26,849 | INFO     | PID=8559 has CPU usage=3.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-11-21 21:15:30] 2025-11-21 20:15:26,850 | INFO     | .. there are 9 such processes running
[2025-11-21 21:15:30] 2025-11-21 20:15:26,850 | INFO     | found 0 job(s) in 20 queues
[2025-11-21 21:15:30] 2025-11-21 20:15:26,850 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-21 21:15:30] 2025-11-21 20:15:26,850 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-21 21:15:30] 2025-11-21 20:15:26,851 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-21 21:15:30] 2025-11-21 20:15:26,851 | CRITICAL | thread 'MainThread' is not alive
[2025-11-21 21:15:30] 2025-11-21 20:15:26,851 | INFO     | [monitor] control thread has ended
[2025-11-21 21:15:30] 2025-11-21 20:15:27,139 [wrapper] ==== pilot stdout END ====
[2025-11-21 21:15:30] 2025-11-21 20:15:27,248 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-21 21:15:30] 2025-11-21 20:15:27,270 [wrapper] pilotpid: 8559
[2025-11-21 21:15:30] 2025-11-21 20:15:27,282 [wrapper] Pilot exit status: 0
[2025-11-21 21:15:30] 2025-11-21 20:15:27,723 [wrapper] pandaids: 6891570706
[2025-11-21 21:15:30] 2025-11-21 20:15:27,905 [wrapper] cleanup supervisor_pilot 29270 8560
[2025-11-21 21:15:30] 2025-11-21 20:15:27,974 [wrapper] Test setup, not cleaning
[2025-11-21 21:15:30] 2025-11-21 20:15:27,982 [wrapper] apfmon messages muted
[2025-11-21 21:15:30] 2025-11-21 20:15:27,988 [wrapper] ==== wrapper stdout END ====
[2025-11-21 21:15:30] 2025-11-21 20:15:28,094 [wrapper] ==== wrapper stderr END ====
[2025-11-21 21:15:30]  *** Error codes and diagnostics ***
[2025-11-21 21:15:30]     "exeErrorCode": 0,
[2025-11-21 21:15:30]     "exeErrorDiag": "",
[2025-11-21 21:15:30]     "pilotErrorCode": 0,
[2025-11-21 21:15:30]     "pilotErrorDiag": "",
[2025-11-21 21:15:30]  *** Listing of results directory ***
[2025-11-21 21:15:30] total 1328700
[2025-11-21 21:15:30] -rw-r--r--. 1 boinc boinc    576529 Nov 18 16:15 pilot3.tar.gz
[2025-11-21 21:15:30] -rw-r--r--. 1 boinc boinc      5112 Nov 18 16:39 queuedata.json
[2025-11-21 21:15:30] -rwx------. 1 boinc boinc     36292 Nov 18 16:40 runpilot2-wrapper.sh
[2025-11-21 21:15:30] -rw-r--r--. 1 boinc boinc       100 Nov 20 20:44 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-21 21:15:30] -rwxr-xr-x. 1 boinc boinc      7986 Nov 20 20:44 run_atlas
[2025-11-21 21:15:30] -rw-r--r--. 1 boinc boinc       105 Nov 20 20:44 job.xml
[2025-11-21 21:15:30] -rw-r--r--. 2 boinc boinc 409146525 Nov 20 20:44 EVNT.47493065._000250.pool.root.1
[2025-11-21 21:15:30] drwxrwx--x. 2 boinc boinc        68 Nov 20 20:44 shared
[2025-11-21 21:15:30] -rw-r--r--. 2 boinc boinc    590103 Nov 20 20:44 input.tar.gz
[2025-11-21 21:15:30] -rw-r--r--. 1 boinc boinc      6389 Nov 20 20:44 init_data.xml
[2025-11-21 21:15:30] -rw-r--r--. 2 boinc boinc     15120 Nov 20 20:44 start_atlas.sh
[2025-11-21 21:15:30] -rw-r--r--. 1 boinc boinc         0 Nov 20 20:44 boinc_lockfile
[2025-11-21 21:15:30] -rw-r--r--. 1 boinc boinc      2773 Nov 20 20:44 pandaJob.out
[2025-11-21 21:15:30] -rw-------. 1 boinc boinc    989440 Nov 20 20:47 agis_schedconf.cvmfs.json
[2025-11-21 21:15:30] drwx------. 5 boinc boinc      4096 Nov 20 20:47 pilot3
[2025-11-21 21:15:30] -rw-r--r--. 1 boinc boinc       533 Nov 21 20:53 boinc_task_state.xml
[2025-11-21 21:15:30] -rw-------. 1 boinc boinc 918960197 Nov 21 21:13 HITS.47493068._002498.pool.root.1
[2025-11-21 21:15:30] -rw-------. 1 boinc boinc        95 Nov 21 21:14 pilot_heartbeat.json
[2025-11-21 21:15:30] -rw-------. 1 boinc boinc      1034 Nov 21 21:14 memory_monitor_summary.json
[2025-11-21 21:15:30] -rw-------. 1 boinc boinc   1526164 Nov 21 21:14 agis_ddmendpoints.agis.ALL.json
[2025-11-21 21:15:30] -rw-------. 1 boinc boinc   2522661 Nov 21 21:14 log.47493068._002498.job.log.tgz.1
[2025-11-21 21:15:30] -rw-------. 1 boinc boinc      8625 Nov 21 21:14 heartbeat.json
[2025-11-21 21:15:30] -rw-r--r--. 1 boinc boinc        29 Nov 21 21:15 wrapper_checkpoint.txt
[2025-11-21 21:15:30] -rw-r--r--. 1 boinc boinc      8192 Nov 21 21:15 boinc_mmap_file
[2025-11-21 21:15:30] -rw-------. 1 boinc boinc       889 Nov 21 21:15 pilotlog.txt
[2025-11-21 21:15:30] -rw-------. 1 boinc boinc  11766983 Nov 21 21:15 log.47493068._002498.job.log.1
[2025-11-21 21:15:30] -rw-------. 1 boinc boinc       353 Nov 21 21:15 output.list
[2025-11-21 21:15:30] -rw-r--r--. 1 boinc boinc       620 Nov 21 21:15 runtime_log
[2025-11-21 21:15:30] -rw-------. 1 boinc boinc  14305280 Nov 21 21:15 result.tar.gz
[2025-11-21 21:15:30] -rw-r--r--. 1 boinc boinc      8703 Nov 21 21:15 runtime_log.err
[2025-11-21 21:15:30] -rw-------. 1 boinc boinc       662 Nov 21 21:15 4yzKDmkzcf8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmROFKDmfjDUWo.diag
[2025-11-21 21:15:30] -rw-r--r--. 1 boinc boinc     21373 Nov 21 21:15 stderr.txt
[2025-11-21 21:15:30] HITS file was successfully produced:
[2025-11-21 21:15:30] -rw-------. 1 boinc boinc 918960197 Nov 21 21:13 shared/HITS.pool.root.1
[2025-11-21 21:15:30]  *** Contents of shared directory: ***
[2025-11-21 21:15:30] total 1311552
[2025-11-21 21:15:30] -rw-r--r--. 2 boinc boinc 409146525 Nov 20 20:44 ATLAS.root_0
[2025-11-21 21:15:30] -rw-r--r--. 2 boinc boinc    590103 Nov 20 20:44 input.tar.gz
[2025-11-21 21:15:30] -rw-r--r--. 2 boinc boinc     15120 Nov 20 20:44 start_atlas.sh
[2025-11-21 21:15:30] -rw-------. 1 boinc boinc 918960197 Nov 21 21:13 HITS.pool.root.1
[2025-11-21 21:15:30] -rw-------. 1 boinc boinc  14305280 Nov 21 21:15 result.tar.gz
21:15:32 (4786): run_atlas exited; CPU time 340589.206920
21:15:32 (4786): called boinc_finish(0)

</stderr_txt>
]]>

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