Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
21:40:17 (20484): wrapper (7.7.26015): starting
21:40:17 (20484): wrapper: running run_atlas (--nthreads 8)
[2025-11-20 21:40:17] Arguments: --nthreads 8
[2025-11-20 21:40:17] Threads: 8
[2025-11-20 21:40:17] Checking for CVMFS
[2025-11-20 21:40:18] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-20 21:40:19] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-20 21:40:19] Running cvmfs_config stat atlas.cern.ch
[2025-11-20 21:40:20] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-20 21:40:20] 2.11.2.0 2066 80515 98180 153088 2 85 23742654 25165825 4632 130560 2 20998734 99.893 11971734 2132 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-20 21:40:20] CVMFS is ok
[2025-11-20 21:40:20] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-20 21:40:20] Checking for apptainer binary...
[2025-11-20 21:40:20] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-20 21:40:20] Running /usr/bin/apptainer --version
[2025-11-20 21:40:20] apptainer version 1.3.2-1.el7
[2025-11-20 21:40:20] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-20 21:40:29] cg-vwn446.simple-grid.lan
[2025-11-20 21:40:29] apptainer works
[2025-11-20 21:40:29] Set ATHENA_PROC_NUMBER=8
[2025-11-20 21:40:29] Set ATHENA_CORE_NUMBER=8
[2025-11-20 21:40:29] Starting ATLAS job with PandaID=6891570483
[2025-11-20 21:40:29] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/6 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-21 23:13:09]  *** The last 200 lines of the pilot log: ***
[2025-11-21 23:13:09] 2025-11-21 22:12:15,182 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-11-21 23:13:09] 2025-11-21 22:12:15,185 | INFO     | using path: /var/lib/boinc/slots/6/PanDA_Pilot-6891570483/memory_monitor_summary.json (trf name=prmon)
[2025-11-21 23:13:09] 2025-11-21 22:12:15,185 | INFO     | extracted standard info from prmon json
[2025-11-21 23:13:09] 2025-11-21 22:12:15,185 | INFO     | extracted standard memory fields from prmon json
[2025-11-21 23:13:09] 2025-11-21 22:12:15,186 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-21 23:13:09] 2025-11-21 22:12:15,217 | INFO     | fitting pss+swap vs Time
[2025-11-21 23:13:09] 2025-11-21 22:12:15,220 | INFO     | sum of square deviations: 1031945184770.6772
[2025-11-21 23:13:09] 2025-11-21 22:12:15,285 | INFO     | sum of deviations: 4165829044629.9854
[2025-11-21 23:13:09] 2025-11-21 22:12:15,286 | INFO     | mean x: 1763717512.4012055
[2025-11-21 23:13:09] 2025-11-21 22:12:15,286 | INFO     | mean y: 2868183.7829872738
[2025-11-21 23:13:09] 2025-11-21 22:12:15,286 | INFO     | intersect: -7117030962.135547
[2025-11-21 23:13:09] 2025-11-21 22:12:15,288 | INFO     | chi2: 13.296428957373019
[2025-11-21 23:13:09] 2025-11-21 22:12:15,291 | INFO     | sum of square deviations: 1021612643030.8275
[2025-11-21 23:13:09] 2025-11-21 22:12:15,357 | INFO     | sum of deviations: 4651933948473.084
[2025-11-21 23:13:09] 2025-11-21 22:12:15,357 | INFO     | mean x: 1763717359.905914
[2025-11-21 23:13:09] 2025-11-21 22:12:15,357 | INFO     | mean y: 2875356.95766129
[2025-11-21 23:13:09] 2025-11-21 22:12:15,357 | INFO     | intersect: -8028247513.3669405
[2025-11-21 23:13:09] 2025-11-21 22:12:15,359 | INFO     | chi2: 10.355066524513353
[2025-11-21 23:13:09] 2025-11-21 22:12:15,359 | INFO     | current chi2=10.355066524513353 (change=22.121446610133976 %)
[2025-11-21 23:13:09] 2025-11-21 22:12:15,360 | INFO     | right removable region: 1487
[2025-11-21 23:13:09] 2025-11-21 22:12:15,362 | INFO     | sum of square deviations: 1021611366910.8276
[2025-11-21 23:13:09] 2025-11-21 22:12:15,426 | INFO     | sum of deviations: 3523494706204.668
[2025-11-21 23:13:09] 2025-11-21 22:12:15,427 | INFO     | mean x: 1763717664.905914
[2025-11-21 23:13:09] 2025-11-21 22:12:15,427 | INFO     | mean y: 2877662.9475806453
[2025-11-21 23:13:09] 2025-11-21 22:12:15,427 | INFO     | intersect: -6080110503.410675
[2025-11-21 23:13:09] 2025-11-21 22:12:15,429 | INFO     | chi2: 8.407917624798413
[2025-11-21 23:13:09] 2025-11-21 22:12:15,429 | INFO     | current chi2=8.407917624798413 (change=36.765595847175724 %)
[2025-11-21 23:13:09] 2025-11-21 22:12:15,431 | INFO     | sum of square deviations: 1011346759650.9142
[2025-11-21 23:13:09] 2025-11-21 22:12:15,496 | INFO     | sum of deviations: 3033810335226.4087
[2025-11-21 23:13:09] 2025-11-21 22:12:15,497 | INFO     | mean x: 1763717817.410654
[2025-11-21 23:13:09] 2025-11-21 22:12:15,497 | INFO     | mean y: 2884936.1766689145
[2025-11-21 23:13:09] 2025-11-21 22:12:15,497 | INFO     | intersect: -5287867510.32381
[2025-11-21 23:13:09] 2025-11-21 22:12:15,500 | INFO     | chi2: 5.632296058649867
[2025-11-21 23:13:09] 2025-11-21 22:12:15,500 | INFO     | current chi2=5.632296058649867 (change=33.01199761950681 %)
[2025-11-21 23:13:09] 2025-11-21 22:12:15,503 | INFO     | sum of square deviations: 1001151582628.5658
[2025-11-21 23:13:09] 2025-11-21 22:12:15,567 | INFO     | sum of deviations: 2881449466195.515
[2025-11-21 23:13:09] 2025-11-21 22:12:15,567 | INFO     | mean x: 1763717969.9120433
[2025-11-21 23:13:09] 2025-11-21 22:12:15,567 | INFO     | mean y: 2887213.3193504736
[2025-11-21 23:13:09] 2025-11-21 22:12:15,568 | INFO     | intersect: -5073331304.539175
[2025-11-21 23:13:09] 2025-11-21 22:12:15,569 | INFO     | chi2: 5.351563993832211
[2025-11-21 23:13:09] 2025-11-21 22:12:15,570 | INFO     | current chi2=5.351563993832211 (change=4.984327206779531 %)
[2025-11-21 23:13:09] 2025-11-21 22:12:15,570 | INFO     | left removable region: 30
[2025-11-21 23:13:09] 2025-11-21 22:12:15,572 | INFO     | sum of square deviations: 959081440274.2834
[2025-11-21 23:13:09] 2025-11-21 22:12:15,640 | INFO     | sum of deviations: 3257816711659.99
[2025-11-21 23:13:09] 2025-11-21 22:12:15,640 | INFO     | mean x: 1763718244.4172957
[2025-11-21 23:13:09] 2025-11-21 22:12:15,641 | INFO     | mean y: 2899653.373369938
[2025-11-21 23:13:09] 2025-11-21 22:12:15,641 | INFO     | intersect: -5988114800.705784
[2025-11-21 23:13:09] 2025-11-21 22:12:15,642 | INFO     | chi2: 1.5047960446185105
[2025-11-21 23:13:09] 2025-11-21 22:12:15,643 | INFO     | current memory leak: 3.40 B/s (using 1457 data points, chi2=1.50)
[2025-11-21 23:13:09] 2025-11-21 22:12:15,645 | INFO     | could have reported an average CPU frequency of 1999 MHz (51 samples)
[2025-11-21 23:13:09] 2025-11-21 22:12:15,646 | INFO     | ..............................
[2025-11-21 23:13:09] 2025-11-21 22:12:15,646 | INFO     | . Timing measurements:
[2025-11-21 23:13:09] 2025-11-21 22:12:15,646 | INFO     | . get job = 0 s
[2025-11-21 23:13:09] 2025-11-21 22:12:15,646 | INFO     | . initial setup = 5 s
[2025-11-21 23:13:09] 2025-11-21 22:12:15,646 | INFO     | . payload setup = 170 s
[2025-11-21 23:13:09] 2025-11-21 22:12:15,646 | INFO     | . stage-in = 0 s
[2025-11-21 23:13:09] 2025-11-21 22:12:15,646 | INFO     | . payload execution = 91197 s
[2025-11-21 23:13:09] 2025-11-21 22:12:15,646 | INFO     | . stage-out = 5 s
[2025-11-21 23:13:09] 2025-11-21 22:12:15,647 | INFO     | . log creation = 2 s
[2025-11-21 23:13:09] 2025-11-21 22:12:15,647 | INFO     | ..............................
[2025-11-21 23:13:09] 2025-11-21 22:12:15,682 | INFO     | time since job start (91676s) is within the limit (172800.0s)
[2025-11-21 23:13:09] 2025-11-21 22:12:15,795 | INFO     | 
[2025-11-21 23:13:09] 2025-11-21 22:12:15,795 | INFO     | job summary report
[2025-11-21 23:13:09] 2025-11-21 22:12:15,796 | INFO     | --------------------------------------------------
[2025-11-21 23:13:09] 2025-11-21 22:12:15,796 | INFO     | PanDA job id: 6891570483
[2025-11-21 23:13:09] 2025-11-21 22:12:15,796 | INFO     | task id: 47493068
[2025-11-21 23:13:09] 2025-11-21 22:12:15,796 | INFO     | errors: (none)
[2025-11-21 23:13:09] 2025-11-21 22:12:15,796 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-21 23:13:09] 2025-11-21 22:12:15,796 | INFO     | pilot state: finished 
[2025-11-21 23:13:09] 2025-11-21 22:12:15,796 | INFO     | transexitcode: 0
[2025-11-21 23:13:09] 2025-11-21 22:12:15,796 | INFO     | exeerrorcode: 0
[2025-11-21 23:13:09] 2025-11-21 22:12:15,796 | INFO     | exeerrordiag: 
[2025-11-21 23:13:09] 2025-11-21 22:12:15,797 | INFO     | exitcode: 0
[2025-11-21 23:13:09] 2025-11-21 22:12:15,797 | INFO     | exitmsg: OK
[2025-11-21 23:13:09] 2025-11-21 22:12:15,797 | INFO     | cpuconsumptiontime: 335003 s
[2025-11-21 23:13:09] 2025-11-21 22:12:15,797 | INFO     | nevents: 1000
[2025-11-21 23:13:09] 2025-11-21 22:12:15,797 | INFO     | neventsw: 0
[2025-11-21 23:13:09] 2025-11-21 22:12:15,797 | INFO     | pid: 30871
[2025-11-21 23:13:09] 2025-11-21 22:12:15,797 | INFO     | pgrp: 30871
[2025-11-21 23:13:09] 2025-11-21 22:12:15,797 | INFO     | corecount: 8
[2025-11-21 23:13:09] 2025-11-21 22:12:15,797 | INFO     | event service: False
[2025-11-21 23:13:09] 2025-11-21 22:12:15,798 | INFO     | sizes: {0: 2298569, 1: 2298824, 2: 2298824, 12: 2298852, 23: 2298880, 34: 2298908, 45: 2299064, 55: 2299092, 66: 2299120, 77: 2299148, 88: 2299204, 99: 2299512, 10
[2025-11-21 23:13:09] 2025-11-21 22:12:15,798 | INFO     | --------------------------------------------------
[2025-11-21 23:13:09] 2025-11-21 22:12:15,798 | INFO     | 
[2025-11-21 23:13:09] 2025-11-21 22:12:15,798 | INFO     | executing command: ls -lF /var/lib/boinc/slots/6
[2025-11-21 23:13:09] 2025-11-21 22:12:15,857 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-21 23:13:09] 2025-11-21 22:12:15,857 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-21 23:13:09] 2025-11-21 22:12:15,858 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-21 23:13:09] 2025-11-21 22:12:15,858 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-21 23:13:09] 2025-11-21 22:12:15,858 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-21 23:13:09] 2025-11-21 22:12:15,858 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-21 23:13:09] 2025-11-21 22:12:15,858 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-21 23:13:09] 2025-11-21 22:12:15,858 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-21 23:13:09] 2025-11-21 22:12:15,858 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-21 23:13:09] 2025-11-21 22:12:15,858 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-21 23:13:09] 2025-11-21 22:12:15,859 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-21 23:13:09] 2025-11-21 22:12:15,859 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-21 23:13:09] 2025-11-21 22:12:15,859 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-21 23:13:09] 2025-11-21 22:12:15,859 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-21 23:13:09] 2025-11-21 22:12:15,859 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-21 23:13:09] 2025-11-21 22:12:15,859 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-21 23:13:09] 2025-11-21 22:12:15,859 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-21 23:13:09] 2025-11-21 22:12:15,859 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-21 23:13:09] 2025-11-21 22:12:15,860 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-21 23:13:09] 2025-11-21 22:12:15,860 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-21 23:13:09] 2025-11-21 22:12:15,860 | INFO     | job 6891570483 has completed (purged errors)
[2025-11-21 23:13:09] 2025-11-21 22:12:15,860 | INFO     | overall cleanup function is called
[2025-11-21 23:13:09] 2025-11-21 22:12:16,857 | INFO     | PID=24265 has CPU usage=3.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-21 23:13:09] 2025-11-21 22:12:16,858 | INFO     | .. there are 9 such processes running
[2025-11-21 23:13:09] 2025-11-21 22:12:16,881 | INFO     | --- collectZombieJob: --- 10, [30871]
[2025-11-21 23:13:09] 2025-11-21 22:12:16,881 | INFO     | zombie collector waiting for pid 30871
[2025-11-21 23:13:09] 2025-11-21 22:12:16,881 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-21 23:13:09] 2025-11-21 22:12:16,881 | INFO     | collected zombie processes
[2025-11-21 23:13:09] 2025-11-21 22:12:16,881 | INFO     | will attempt to kill all subprocesses of pid=30871
[2025-11-21 23:13:09] 2025-11-21 22:12:17,009 | INFO     | process IDs to be killed: [30871] (in reverse order)
[2025-11-21 23:13:09] 2025-11-21 22:12:17,077 | WARNING  | found no corresponding commands to process id(s)
[2025-11-21 23:13:09] 2025-11-21 22:12:17,078 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-21 23:13:09] 2025-11-21 22:12:17,082 | INFO     | did not find any defunct processes belonging to 30871
[2025-11-21 23:13:09] 2025-11-21 22:12:17,086 | INFO     | did not find any defunct processes belonging to 30871
[2025-11-21 23:13:09] 2025-11-21 22:12:17,088 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-21 23:13:09] 2025-11-21 22:12:17,088 | INFO     | ready for new job
[2025-11-21 23:13:09] 2025-11-21 22:12:17,089 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-21 23:13:09] 2025-11-21 22:12:17,096 | INFO     | ***************************************
[2025-11-21 23:13:09] 2025-11-21 22:12:17,096 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-21 23:13:09] 2025-11-21 22:12:17,096 | INFO     | ***************************************
[2025-11-21 23:13:09] 2025-11-21 22:12:17,096 | INFO     | 
[2025-11-21 23:13:09] 2025-11-21 22:12:17,097 | INFO     | pilot is running in a VM
[2025-11-21 23:13:09] 2025-11-21 22:12:17,097 | INFO     | architecture information:
[2025-11-21 23:13:09] 2025-11-21 22:12:17,098 | INFO     | executing command: cat /etc/os-release
[2025-11-21 23:13:09] 2025-11-21 22:12:17,217 | INFO     | cat /etc/os-release:
[2025-11-21 23:13:09] NAME="CentOS Linux"
[2025-11-21 23:13:09] VERSION="7 (Core)"
[2025-11-21 23:13:09] ID="centos"
[2025-11-21 23:13:09] ID_LIKE="rhel fedora"
[2025-11-21 23:13:09] VERSION_ID="7"
[2025-11-21 23:13:09] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-21 23:13:09] ANSI_COLOR="0;31"
[2025-11-21 23:13:09] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-21 23:13:09] HOME_URL="https://www.centos.org/"
[2025-11-21 23:13:09] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-21 23:13:09] 
[2025-11-21 23:13:09] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-21 23:13:09] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-21 23:13:09] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-21 23:13:09] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-21 23:13:09] 
[2025-11-21 23:13:09] 2025-11-21 22:12:17,218 | INFO     | ***************************************
[2025-11-21 23:13:09] 2025-11-21 22:12:17,722 | INFO     | executing command: df -mP /var/lib/boinc/slots/6
[2025-11-21 23:13:09] 2025-11-21 22:12:17,973 | INFO     | sufficient remaining disk space (493558431744 B)
[2025-11-21 23:13:09] 2025-11-21 22:12:17,974 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-21 23:13:09] 2025-11-21 22:12:17,974 | INFO     | current server update state: UPDATING_FINAL
[2025-11-21 23:13:09] 2025-11-21 22:12:17,974 | INFO     | update_server=False
[2025-11-21 23:13:09] 2025-11-21 22:12:17,974 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-21 23:13:09] 2025-11-21 22:12:17,974 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-21 23:13:09] 2025-11-21 22:12:17,975 | INFO     | aborting loop
[2025-11-21 23:13:09] 2025-11-21 22:12:17,977 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-21 23:13:09] 2025-11-21 22:12:18,434 | INFO     | all payload control threads have been joined
[2025-11-21 23:13:09] 2025-11-21 22:12:18,725 | INFO     | all data control threads have been joined
[2025-11-21 23:13:09] 2025-11-21 22:12:18,981 | INFO     | [job] job monitor thread has finished
[2025-11-21 23:13:09] 2025-11-21 22:12:18,982 | INFO     | [job] retrieve thread has finished
[2025-11-21 23:13:09] 2025-11-21 22:12:19,440 | INFO     | [payload] control thread has finished
[2025-11-21 23:13:09] 2025-11-21 22:12:19,568 | INFO     | all job control threads have been joined
[2025-11-21 23:13:09] 2025-11-21 22:12:19,612 | INFO     | [job] validate thread has finished
[2025-11-21 23:13:09] 2025-11-21 22:12:19,617 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-21 23:13:09] 2025-11-21 22:12:19,679 | INFO     | [payload] validate_pre thread has finished
[2025-11-21 23:13:09] 2025-11-21 22:12:19,731 | INFO     | [data] control thread has finished
[2025-11-21 23:13:09] 2025-11-21 22:12:19,939 | INFO     | [payload] failed_post thread has finished
[2025-11-21 23:13:09] 2025-11-21 22:12:19,986 | INFO     | [data] copytool_out thread has finished
[2025-11-21 23:13:09] 2025-11-21 22:12:19,996 | INFO     | [payload] validate_post thread has finished
[2025-11-21 23:13:09] 2025-11-21 22:12:20,036 | INFO     | [data] copytool_in thread has finished
[2025-11-21 23:13:09] 2025-11-21 22:12:20,348 | INFO     | [job] create_data_payload thread has finished
[2025-11-21 23:13:09] 2025-11-21 22:12:20,371 | INFO     | [payload] execute_payloads thread has finished
[2025-11-21 23:13:09] 2025-11-21 22:12:20,574 | INFO     | [job] control thread has finished
[2025-11-21 23:13:09] 2025-11-21 22:12:20,731 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-21 23:13:09] 2025-11-21 22:12:20,838 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-21 23:13:09] 2025-11-21 22:12:21,844 | INFO     | [job] queue monitor thread has finished
[2025-11-21 23:13:09] 2025-11-21 22:12:24,740 | INFO     | [data] queue_monitor thread has finished
[2025-11-21 23:13:09] 2025-11-21 22:12:49,043 | INFO     | PID=24265 has CPU usage=1.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-21 23:13:09] 2025-11-21 22:12:49,044 | INFO     | .. there are 9 such processes running
[2025-11-21 23:13:09] 2025-11-21 22:12:49,044 | INFO     | found 0 job(s) in 20 queues
[2025-11-21 23:13:09] 2025-11-21 22:12:49,044 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-21 23:13:09] 2025-11-21 22:12:49,044 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-21 23:13:09] 2025-11-21 22:12:58,388 | INFO     | [monitor] cgroup control has ended
[2025-11-21 23:13:09] 2025-11-21 22:13:00,354 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140333781215040)>', '<ExcThread(monitor, started 140333182592768)>']
[2025-11-21 23:13:09] 2025-11-21 22:13:01,113 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-21 23:13:09] 2025-11-21 22:13:01,113 | INFO     | [monitor] control thread has ended
[2025-11-21 23:13:09] 2025-11-21 22:13:05,380 | INFO     | all workflow threads have been joined
[2025-11-21 23:13:09] 2025-11-21 22:13:05,380 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-21 23:13:09] 2025-11-21 22:13:05,380 | INFO     | traces error code: 0
[2025-11-21 23:13:09] 2025-11-21 22:13:05,380 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-21 23:13:09] 2025-11-21 22:13:05,722 [wrapper] ==== pilot stdout END ====
[2025-11-21 23:13:09] 2025-11-21 22:13:05,781 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-21 23:13:09] 2025-11-21 22:13:05,824 [wrapper] pilotpid: 24265
[2025-11-21 23:13:09] 2025-11-21 22:13:05,877 [wrapper] Pilot exit status: 0
[2025-11-21 23:13:09] 2025-11-21 22:13:06,153 [wrapper] pandaids: 6891570483
[2025-11-21 23:13:09] 2025-11-21 22:13:06,921 [wrapper] cleanup supervisor_pilot 32167 24266
[2025-11-21 23:13:09] 2025-11-21 22:13:06,976 [wrapper] Test setup, not cleaning
[2025-11-21 23:13:09] 2025-11-21 22:13:07,053 [wrapper] apfmon messages muted
[2025-11-21 23:13:09] 2025-11-21 22:13:07,169 [wrapper] ==== wrapper stdout END ====
[2025-11-21 23:13:09] 2025-11-21 22:13:07,270 [wrapper] ==== wrapper stderr END ====
[2025-11-21 23:13:09]  *** Error codes and diagnostics ***
[2025-11-21 23:13:09]     "exeErrorCode": 0,
[2025-11-21 23:13:09]     "exeErrorDiag": "",
[2025-11-21 23:13:09]     "pilotErrorCode": 0,
[2025-11-21 23:13:09]     "pilotErrorDiag": "",
[2025-11-21 23:13:09]  *** Listing of results directory ***
[2025-11-21 23:13:09] total 1312276
[2025-11-21 23:13:09] -rw-r--r--. 1 boinc boinc    576529 Nov 18 16:15 pilot3.tar.gz
[2025-11-21 23:13:09] -rw-r--r--. 1 boinc boinc      5112 Nov 18 16:39 queuedata.json
[2025-11-21 23:13:09] -rwx------. 1 boinc boinc     36292 Nov 18 16:40 runpilot2-wrapper.sh
[2025-11-21 23:13:09] -rw-r--r--. 1 boinc boinc       100 Nov 20 21:40 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-21 23:13:09] -rwxr-xr-x. 1 boinc boinc      7986 Nov 20 21:40 run_atlas
[2025-11-21 23:13:09] -rw-r--r--. 1 boinc boinc       105 Nov 20 21:40 job.xml
[2025-11-21 23:13:09] -rw-r--r--. 1 boinc boinc      6392 Nov 20 21:40 init_data.xml
[2025-11-21 23:13:09] -rw-r--r--. 2 boinc boinc 408595994 Nov 20 21:40 EVNT.47493065._000236.pool.root.1
[2025-11-21 23:13:09] -rw-r--r--. 2 boinc boinc     15120 Nov 20 21:40 start_atlas.sh
[2025-11-21 23:13:09] drwxrwx--x. 2 boinc boinc        68 Nov 20 21:40 shared
[2025-11-21 23:13:09] -rw-r--r--. 2 boinc boinc    590101 Nov 20 21:40 input.tar.gz
[2025-11-21 23:13:09] -rw-r--r--. 1 boinc boinc         0 Nov 20 21:40 boinc_lockfile
[2025-11-21 23:13:09] -rw-r--r--. 1 boinc boinc      2773 Nov 20 21:40 pandaJob.out
[2025-11-21 23:13:09] -rw-------. 1 boinc boinc    989440 Nov 20 21:44 agis_schedconf.cvmfs.json
[2025-11-21 23:13:09] drwx------. 5 boinc boinc      4096 Nov 20 21:44 pilot3
[2025-11-21 23:13:09] -rw-r--r--. 1 boinc boinc       533 Nov 21 22:55 boinc_task_state.xml
[2025-11-21 23:13:09] -rw-------. 1 boinc boinc 901707840 Nov 21 23:09 HITS.47493068._002354.pool.root.1
[2025-11-21 23:13:09] -rw-------. 1 boinc boinc      1034 Nov 21 23:10 memory_monitor_summary.json
[2025-11-21 23:13:09] -rw-------. 1 boinc boinc   1526164 Nov 21 23:10 agis_ddmendpoints.agis.ALL.json
[2025-11-21 23:13:09] -rw-------. 1 boinc boinc   2567321 Nov 21 23:10 log.47493068._002354.job.log.tgz.1
[2025-11-21 23:13:09] -rw-------. 1 boinc boinc        95 Nov 21 23:12 pilot_heartbeat.json
[2025-11-21 23:13:09] -rw-------. 1 boinc boinc      8631 Nov 21 23:12 heartbeat.json
[2025-11-21 23:13:09] -rw-r--r--. 1 boinc boinc      8192 Nov 21 23:12 boinc_mmap_file
[2025-11-21 23:13:09] -rw-r--r--. 1 boinc boinc        29 Nov 21 23:12 wrapper_checkpoint.txt
[2025-11-21 23:13:09] -rw-------. 1 boinc boinc      4884 Nov 21 23:13 pilotlog.txt
[2025-11-21 23:13:09] -rw-------. 1 boinc boinc  12211863 Nov 21 23:13 log.47493068._002354.job.log.1
[2025-11-21 23:13:09] -rw-------. 1 boinc boinc       353 Nov 21 23:13 output.list
[2025-11-21 23:13:09] -rw-r--r--. 1 boinc boinc       620 Nov 21 23:13 runtime_log
[2025-11-21 23:13:09] -rw-------. 1 boinc boinc  14796800 Nov 21 23:13 result.tar.gz
[2025-11-21 23:13:09] -rw-r--r--. 1 boinc boinc      8703 Nov 21 23:13 runtime_log.err
[2025-11-21 23:13:09] -rw-------. 1 boinc boinc       662 Nov 21 23:13 5yLODmjzcf8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmpcFKDmLsD9in.diag
[2025-11-21 23:13:09] -rw-r--r--. 1 boinc boinc     21092 Nov 21 23:13 stderr.txt
[2025-11-21 23:13:09] HITS file was successfully produced:
[2025-11-21 23:13:09] -rw-------. 1 boinc boinc 901707840 Nov 21 23:09 shared/HITS.pool.root.1
[2025-11-21 23:13:09]  *** Contents of shared directory: ***
[2025-11-21 23:13:09] total 1294644
[2025-11-21 23:13:09] -rw-r--r--. 2 boinc boinc 408595994 Nov 20 21:40 ATLAS.root_0
[2025-11-21 23:13:09] -rw-r--r--. 2 boinc boinc     15120 Nov 20 21:40 start_atlas.sh
[2025-11-21 23:13:09] -rw-r--r--. 2 boinc boinc    590101 Nov 20 21:40 input.tar.gz
[2025-11-21 23:13:09] -rw-------. 1 boinc boinc 901707840 Nov 21 23:09 HITS.pool.root.1
[2025-11-21 23:13:09] -rw-------. 1 boinc boinc  14796800 Nov 21 23:13 result.tar.gz
23:13:11 (20484): run_atlas exited; CPU time 335539.884714
23:13:11 (20484): called boinc_finish(0)

</stderr_txt>
]]>

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