Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
09:53:50 (2459226): wrapper (7.7.26015): starting
09:53:50 (2459226): wrapper: running run_atlas (--nthreads 12)
[2025-11-18 09:53:50] Arguments: --nthreads 12
[2025-11-18 09:53:50] Threads: 12
[2025-11-18 09:53:50] Checking for CVMFS
[2025-11-18 09:53:51] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-18 09:53:51] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-18 09:53:51] Running cvmfs_config stat atlas.cern.ch
[2025-11-18 09:53:53] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-18 09:53:53] 2.11.5.0 2756331 17148 242844 153009 2 397 35875321 45568000 17205 130560 0 127923768 99.806 67872692 24036 http://cvmfs-s1bnl.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.163:3129 1
[2025-11-18 09:53:53] CVMFS is ok
[2025-11-18 09:53:53] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-18 09:53:53] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-18 09:53:53] Further information can be found at the LHC@home message board.
[2025-11-18 09:53:53] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-18 09:53:53] Checking for apptainer binary...
[2025-11-18 09:53:53] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-18 09:53:53] Running /usr/bin/apptainer --version
[2025-11-18 09:53:53] apptainer version 1.4.1-1.el9
[2025-11-18 09:53:53] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-18 09:53:54] wns0075.triumf.lcg
[2025-11-18 09:53:54] apptainer works
[2025-11-18 09:53:55] Set ATHENA_PROC_NUMBER=12
[2025-11-18 09:53:55] Set ATHENA_CORE_NUMBER=12
[2025-11-18 09:53:55] Starting ATLAS job with PandaID=6891570967
[2025-11-18 09:53:55] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-18 10:03:56]  *** The last 200 lines of the pilot log: ***
[2025-11-18 10:03:56] 2025-11-18 18:03:22,415 | WARNING  | wrong length of table data, x=[1763488573.0, 1763488634.0, 1763488695.0, 1763488756.0, 1763488817.0], y=[1907.0, 488358.0, 670293.0, 373634.0, 614069.0] (must be s
[2025-11-18 10:03:56] 2025-11-18 18:03:22,416 | INFO     | could have reported an average CPU frequency of 1148 MHz (4 samples)
[2025-11-18 10:03:56] 2025-11-18 18:03:22,416 | INFO     | ..............................
[2025-11-18 10:03:56] 2025-11-18 18:03:22,416 | INFO     | . Timing measurements:
[2025-11-18 10:03:56] 2025-11-18 18:03:22,416 | INFO     | . get job = 0 s
[2025-11-18 10:03:56] 2025-11-18 18:03:22,416 | INFO     | . initial setup = 3 s
[2025-11-18 10:03:56] 2025-11-18 18:03:22,417 | INFO     | . payload setup = 31 s
[2025-11-18 10:03:56] 2025-11-18 18:03:22,417 | INFO     | . stage-in = 0 s
[2025-11-18 10:03:56] 2025-11-18 18:03:22,417 | INFO     | . payload execution = 313 s
[2025-11-18 10:03:56] 2025-11-18 18:03:22,417 | INFO     | . stage-out = 0 s
[2025-11-18 10:03:56] 2025-11-18 18:03:22,417 | INFO     | . log creation = 0 s
[2025-11-18 10:03:56] 2025-11-18 18:03:22,417 | INFO     | ..............................
[2025-11-18 10:03:56] 2025-11-18 18:03:22,417 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-18 10:03:56] 2025-11-18 18:03:22,418 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6891570967/pilotlog.txt
[2025-11-18 10:03:56] 2025-11-18 18:03:22,440 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2025-11-18 10:03:56] - Log from pilotlog.txt -
[2025-11-18 10:03:56] 2025-11-18 18:03:22,412 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6891570967/memory_monitor_summary.json (trf name=prmon)
[2025-11-18 10:03:56] 2025-11-18 18:03:22,413 | INFO     | extracted standard info from prmon json
[2025-11-18 10:03:56] 2025-11-18 18:03:22,413 | INFO     | extracted standard memory fields from prmon json
[2025-11-18 10:03:56] 2025-11-18 18:03:22,413 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-18 10:03:56] 2025-11-18 18:03:22,413 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-18 10:03:56] 2025-11-18 18:03:22,414 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-18 10:03:56] 2025-11-18 18:03:22,415 | WARNING  | wrong length of table data, x=[1763488573.0, 1763488634.0, 1763488695.0, 1763488756.0, 1763488817.0], y=[1907.0, 488358.0, 670293.0, 373634.0, 614069.0] (must be s
[2025-11-18 10:03:56] 2025-11-18 18:03:22,416 | INFO     | could have reported an average CPU frequency of 1148 MHz (4 samples)
[2025-11-18 10:03:56] 2025-11-18 18:03:22,416 | INFO     | ..............................
[2025-11-18 10:03:56] 2025-11-18 18:03:22,416 | INFO     | . Timing measurements:
[2025-11-18 10:03:56] 2025-11-18 18:03:22,416 | INFO     | . get job = 0 s
[2025-11-18 10:03:56] 2025-11-18 18:03:22,416 | INFO     | . initial setup = 3 s
[2025-11-18 10:03:56] 2025-11-18 18:03:22,417 | INFO     | . payload setup = 31 s
[2025-11-18 10:03:56] 2025-11-18 18:03:22,417 | INFO     | . stage-in = 0 s
[2025-11-18 10:03:56] 2025-11-18 18:03:22,417 | INFO     | . payload execution = 313 s
[2025-11-18 10:03:56] 2025-11-18 18:03:22,417 | INFO     | . stage-out = 0 s
[2025-11-18 10:03:56] 2025-11-18 18:03:22,417 | INFO     | . log creation = 0 s
[2025-11-18 10:03:56] 2025-11-18 18:03:22,417 | INFO     | ..............................
[2025-11-18 10:03:56] 2025-11-18 18:03:22,417 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-18 10:03:56] 2025-11-18 18:03:22,418 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6891570967/pilotlog.txt
[2025-11-18 10:03:56] 2025-11-18 18:03:22,441 | WARNING  | 
[2025-11-18 10:03:56] [begin log extracts]
[2025-11-18 10:03:56] - Log from pilotlog.txt -
[2025-11-18 10:03:56] 2025-11-18 18:03:22,412 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6891570967/memory_monitor_summary.json (trf name=prmon)
[2025-11-18 10:03:56] 2025-11-18 18:03:22,413 | INFO     | extracted standard info from prmon json
[2025-11-18 10:03:56] 2025-11-18 18:03:22,413 | INFO     | extracted standard memory fields from prmon json
[2025-11-18 10:03:56] 2025-11-18 18:03:22,413 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-18 10:03:56] 2025-11-18 18:03:22,413 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-18 10:03:56] 2025-11-18 18:03:22,414 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-18 10:03:56] 2025-11-18 18:03:22,415 | WARNING  | wrong length of table data, x=[1763488573.0, 1763488634.0, 1763488695.0, 1763488756.0, 1763488817.0], y=[1907.0, 488358.0, 670293.0, 373634.0, 614069.0] (must be s
[2025-11-18 10:03:56] 2025-11-18 18:03:22,416 | INFO     | could have reported an average CPU frequency of 1148 MHz (4 samples)
[2025-11-18 10:03:56] 2025-11-18 18:03:22,416 | INFO     | ..............................
[2025-11-18 10:03:56] 2025-11-18 18:03:22,416 | INFO     | . Timing measurements:
[2025-11-18 10:03:56] 2025-11-18 18:03:22,416 | INFO     | . get job = 0 s
[2025-11-18 10:03:56] 2025-11-18 18:03:22,416 | INFO     | . initial setup = 3 s
[2025-11-18 10:03:56] 2025-11-18 18:03:22,417 | INFO     | . payload setup = 31 s
[2025-11-18 10:03:56] 2025-11-18 18:03:22,417 | INFO     | . stage-in = 0 s
[2025-11-18 10:03:56] 2025-11-18 18:03:22,417 | INFO     | . payload execution = 313 s
[2025-11-18 10:03:56] 2025-11-18 18:03:22,417 | INFO     | . stage-out = 0 s
[2025-11-18 10:03:56] 2025-11-18 18:03:22,417 | INFO     | . log creation = 0 s
[2025-11-18 10:03:56] 2025-11-18 18:03:22,417 | INFO     | ..............................
[2025-11-18 10:03:56] 2025-11-18 18:03:22,417 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-18 10:03:56] 2025-11-18 18:03:22,418 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6891570967/pilotlog.txt
[2025-11-18 10:03:56] [end log extracts]
[2025-11-18 10:03:56] 2025-11-18 18:03:22,441 | WARNING  | pilotErrorCodes = [1305, 1165] (will report primary/first error code)
[2025-11-18 10:03:56] 2025-11-18 18:03:22,443 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return c
[2025-11-18 10:03:56] 2025-11-18 18:03:22,494 | INFO     | time since job start (530s) is within the limit (172800.0s)
[2025-11-18 10:03:56] 2025-11-18 18:03:22,719 | INFO     | 
[2025-11-18 10:03:56] 2025-11-18 18:03:22,720 | INFO     | job summary report
[2025-11-18 10:03:56] 2025-11-18 18:03:22,720 | INFO     | --------------------------------------------------
[2025-11-18 10:03:56] 2025-11-18 18:03:22,720 | INFO     | PanDA job id: 6891570967
[2025-11-18 10:03:56] 2025-11-18 18:03:22,720 | INFO     | task id: 47493068
[2025-11-18 10:03:56] 2025-11-18 18:03:22,721 | INFO     | error 1/2: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2025-11-18 10:00:55,538 CRITICAL Transform executor raised TransformValidationExceptio
[2025-11-18 10:03:56] 2025-11-18 18:03:22,721 | INFO     | error 2/2: 1165: Local output file is missing
[2025-11-18 10:03:56] 2025-11-18 18:03:22,721 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-18 10:03:56] 2025-11-18 18:03:22,721 | INFO     | pilot state: failed 
[2025-11-18 10:03:56] 2025-11-18 18:03:22,721 | INFO     | transexitcode: 65
[2025-11-18 10:03:56] 2025-11-18 18:03:22,721 | INFO     | exeerrorcode: 65
[2025-11-18 10:03:56] 2025-11-18 18:03:22,722 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: "IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFL
[2025-11-18 10:03:56] 2025-11-18 18:03:22,722 | INFO     | exitcode: 65
[2025-11-18 10:03:56] 2025-11-18 18:03:22,722 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: "IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 
[2025-11-18 10:03:56] 2025-11-18 18:03:22,722 | INFO     | cpuconsumptiontime: 87 s
[2025-11-18 10:03:56] 2025-11-18 18:03:22,722 | INFO     | nevents: 0
[2025-11-18 10:03:56] 2025-11-18 18:03:22,722 | INFO     | neventsw: 0
[2025-11-18 10:03:56] 2025-11-18 18:03:22,722 | INFO     | pid: 2469757
[2025-11-18 10:03:56] 2025-11-18 18:03:22,723 | INFO     | pgrp: 2469757
[2025-11-18 10:03:56] 2025-11-18 18:03:22,723 | INFO     | corecount: 12
[2025-11-18 10:03:56] 2025-11-18 18:03:22,723 | INFO     | event service: False
[2025-11-18 10:03:56] 2025-11-18 18:03:22,723 | INFO     | sizes: {0: 2297026, 1: 2297225, 2: 2297225, 13: 2297253, 20: 2297571, 23: 2297599, 349: 2323225, 352: 2327515, 353: 2327571, 488: 2327765}
[2025-11-18 10:03:56] 2025-11-18 18:03:22,723 | INFO     | --------------------------------------------------
[2025-11-18 10:03:56] 2025-11-18 18:03:22,723 | INFO     | 
[2025-11-18 10:03:56] 2025-11-18 18:03:22,724 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2025-11-18 10:03:56] 2025-11-18 18:03:22,764 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-18 10:03:56] 2025-11-18 18:03:22,765 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-18 10:03:56] 2025-11-18 18:03:22,765 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-18 10:03:56] 2025-11-18 18:03:22,765 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-18 10:03:56] 2025-11-18 18:03:22,765 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-18 10:03:56] 2025-11-18 18:03:22,765 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-18 10:03:56] 2025-11-18 18:03:22,766 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-18 10:03:56] 2025-11-18 18:03:22,766 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-18 10:03:56] 2025-11-18 18:03:22,766 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-18 10:03:56] 2025-11-18 18:03:22,766 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-18 10:03:56] 2025-11-18 18:03:22,766 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-18 10:03:56] 2025-11-18 18:03:22,766 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-18 10:03:56] 2025-11-18 18:03:22,767 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-18 10:03:56] 2025-11-18 18:03:22,767 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-18 10:03:56] 2025-11-18 18:03:22,767 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-18 10:03:56] 2025-11-18 18:03:22,779 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-18 10:03:56] 2025-11-18 18:03:22,780 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-18 10:03:56] 2025-11-18 18:03:22,780 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-18 10:03:56] 2025-11-18 18:03:22,780 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-18 10:03:56] 2025-11-18 18:03:22,780 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-18 10:03:56] 2025-11-18 18:03:22,781 | INFO     | job 6891570967 has completed (purged errors)
[2025-11-18 10:03:56] 2025-11-18 18:03:22,781 | INFO     | overall cleanup function is called
[2025-11-18 10:03:56] 2025-11-18 18:03:23,836 | INFO     | --- collectZombieJob: --- 10, [2469757]
[2025-11-18 10:03:56] 2025-11-18 18:03:23,836 | INFO     | zombie collector waiting for pid 2469757
[2025-11-18 10:03:56] 2025-11-18 18:03:23,836 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-18 10:03:56] 2025-11-18 18:03:23,837 | INFO     | collected zombie processes
[2025-11-18 10:03:56] 2025-11-18 18:03:23,837 | INFO     | will attempt to kill all subprocesses of pid=2469757
[2025-11-18 10:03:56] 2025-11-18 18:03:24,868 | INFO     | process IDs to be killed: [2469757] (in reverse order)
[2025-11-18 10:03:56] 2025-11-18 18:03:25,020 | WARNING  | found no corresponding commands to process id(s)
[2025-11-18 10:03:56] 2025-11-18 18:03:25,021 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-18 10:03:56] 2025-11-18 18:03:25,029 | INFO     | did not find any defunct processes belonging to 2469757
[2025-11-18 10:03:56] 2025-11-18 18:03:25,037 | INFO     | did not find any defunct processes belonging to 2469757
[2025-11-18 10:03:56] 2025-11-18 18:03:25,038 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-18 10:03:56] 2025-11-18 18:03:25,038 | INFO     | ready for new job
[2025-11-18 10:03:56] 2025-11-18 18:03:25,038 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-18 10:03:56] 2025-11-18 18:03:25,039 | INFO     | ***************************************
[2025-11-18 10:03:56] 2025-11-18 18:03:25,040 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-18 10:03:56] 2025-11-18 18:03:25,040 | INFO     | ***************************************
[2025-11-18 10:03:56] 2025-11-18 18:03:25,040 | INFO     | 
[2025-11-18 10:03:56] 2025-11-18 18:03:25,042 | INFO     | architecture information:
[2025-11-18 10:03:56] 2025-11-18 18:03:25,042 | INFO     | executing command: cat /etc/os-release
[2025-11-18 10:03:56] 2025-11-18 18:03:25,053 | INFO     | cat /etc/os-release:
[2025-11-18 10:03:56] NAME="CentOS Linux"
[2025-11-18 10:03:56] VERSION="7 (Core)"
[2025-11-18 10:03:56] ID="centos"
[2025-11-18 10:03:56] ID_LIKE="rhel fedora"
[2025-11-18 10:03:56] VERSION_ID="7"
[2025-11-18 10:03:56] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-18 10:03:56] ANSI_COLOR="0;31"
[2025-11-18 10:03:56] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-18 10:03:56] HOME_URL="https://www.centos.org/"
[2025-11-18 10:03:56] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-18 10:03:56] 
[2025-11-18 10:03:56] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-18 10:03:56] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-18 10:03:56] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-18 10:03:56] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-18 10:03:56] 
[2025-11-18 10:03:56] 2025-11-18 18:03:25,053 | INFO     | ***************************************
[2025-11-18 10:03:56] 2025-11-18 18:03:25,557 | INFO     | executing command: df -mP /home/boinc/slots/0
[2025-11-18 10:03:56] 2025-11-18 18:03:25,611 | INFO     | sufficient remaining disk space (1933669564416 B)
[2025-11-18 10:03:56] 2025-11-18 18:03:25,612 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-18 10:03:56] 2025-11-18 18:03:25,612 | INFO     | current server update state: UPDATING_FINAL
[2025-11-18 10:03:56] 2025-11-18 18:03:25,612 | INFO     | update_server=False
[2025-11-18 10:03:56] 2025-11-18 18:03:25,612 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-18 10:03:56] 2025-11-18 18:03:25,613 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-18 10:03:56] 2025-11-18 18:03:25,627 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-18 10:03:56] 2025-11-18 18:03:25,900 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-18 10:03:56] 2025-11-18 18:03:25,901 | INFO     | aborting loop
[2025-11-18 10:03:56] 2025-11-18 18:03:25,942 | INFO     | all data control threads have been joined
[2025-11-18 10:03:56] 2025-11-18 18:03:26,270 | INFO     | all payload control threads have been joined
[2025-11-18 10:03:56] 2025-11-18 18:03:26,490 | INFO     | all job control threads have been joined
[2025-11-18 10:03:56] 2025-11-18 18:03:26,619 | INFO     | [job] retrieve thread has finished
[2025-11-18 10:03:56] 2025-11-18 18:03:26,621 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-18 10:03:56] 2025-11-18 18:03:26,668 | INFO     | [payload] execute_payloads thread has finished
[2025-11-18 10:03:56] 2025-11-18 18:03:26,840 | INFO     | [payload] validate_post thread has finished
[2025-11-18 10:03:56] 2025-11-18 18:03:26,907 | INFO     | [job] job monitor thread has finished
[2025-11-18 10:03:56] 2025-11-18 18:03:26,909 | INFO     | [job] create_data_payload thread has finished
[2025-11-18 10:03:56] 2025-11-18 18:03:26,948 | INFO     | [data] control thread has finished
[2025-11-18 10:03:56] 2025-11-18 18:03:26,969 | INFO     | [payload] failed_post thread has finished
[2025-11-18 10:03:56] 2025-11-18 18:03:27,276 | INFO     | [payload] control thread has finished
[2025-11-18 10:03:56] 2025-11-18 18:03:27,346 | INFO     | [data] copytool_in thread has finished
[2025-11-18 10:03:56] 2025-11-18 18:03:27,496 | INFO     | [job] control thread has finished
[2025-11-18 10:03:56] 2025-11-18 18:03:27,634 | INFO     | [data] copytool_out thread has finished
[2025-11-18 10:03:56] 2025-11-18 18:03:27,734 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-18 10:03:56] 2025-11-18 18:03:27,902 | INFO     | [payload] validate_pre thread has finished
[2025-11-18 10:03:56] 2025-11-18 18:03:27,906 | INFO     | [job] validate thread has finished
[2025-11-18 10:03:56] 2025-11-18 18:03:28,740 | INFO     | [job] queue monitor thread has finished
[2025-11-18 10:03:56] 2025-11-18 18:03:29,622 | INFO     | [data] queue_monitor thread has finished
[2025-11-18 10:03:56] 2025-11-18 18:03:32,902 | INFO     | [monitor] cgroup control has ended
[2025-11-18 10:03:56] 2025-11-18 18:03:33,774 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139887285618496)>', '<ExcThread(monitor, started 139886606673664)>']
[2025-11-18 10:03:56] 2025-11-18 18:03:38,800 | INFO     | all workflow threads have been joined
[2025-11-18 10:03:56] 2025-11-18 18:03:38,801 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-18 10:03:56] 2025-11-18 18:03:38,801 | INFO     | traces error code: 0
[2025-11-18 10:03:56] 2025-11-18 18:03:38,802 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-18 10:03:56] 2025-11-18 18:03:56,211 | INFO     | PID=2462981 has CPU usage=3.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-18 10:03:56] 2025-11-18 18:03:56,211 | INFO     | .. there are 28 such processes running
[2025-11-18 10:03:56] 2025-11-18 18:03:56,212 | INFO     | found 0 job(s) in 20 queues
[2025-11-18 10:03:56] 2025-11-18 18:03:56,212 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-18 10:03:56] 2025-11-18 18:03:56,212 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-18 10:03:56] 2025-11-18 18:03:56,213 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-18 10:03:56] 2025-11-18 18:03:56,213 | INFO     | [monitor] control thread has ended
[2025-11-18 10:03:56] 2025-11-18 18:03:56,390 [wrapper] ==== pilot stdout END ====
[2025-11-18 10:03:56] 2025-11-18 18:03:56,398 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-18 10:03:56] 2025-11-18 18:03:56,401 [wrapper] pilotpid: 2462981
[2025-11-18 10:03:56] 2025-11-18 18:03:56,405 [wrapper] Pilot exit status: 0
[2025-11-18 10:03:56] 2025-11-18 18:03:56,464 [wrapper] pandaids: 6891570967
[2025-11-18 10:03:56] 2025-11-18 18:03:56,575 [wrapper] cleanup supervisor_pilot 2462987 2462982
[2025-11-18 10:03:56] 2025-11-18 18:03:56,581 [wrapper] Test setup, not cleaning
[2025-11-18 10:03:56] 2025-11-18 18:03:56,586 [wrapper] apfmon messages muted
[2025-11-18 10:03:56] 2025-11-18 18:03:56,595 [wrapper] ==== wrapper stdout END ====
[2025-11-18 10:03:56] 2025-11-18 18:03:56,599 [wrapper] ==== wrapper stderr END ====
[2025-11-18 10:03:56]  *** Error codes and diagnostics ***
[2025-11-18 10:03:56]     "exeErrorCode": 65,
[2025-11-18 10:03:56]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: \"IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 cannot be opened - STOP\"",
[2025-11-18 10:03:56]     "pilotErrorCode": 1305,
[2025-11-18 10:03:56]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: \"IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 canno",
[2025-11-18 10:03:56]  *** Listing of results directory ***
[2025-11-18 10:03:56] total 406476
[2025-11-18 10:03:56] -rw-r--r--. 1 boinc boinc    576529 Nov 18 07:15 pilot3.tar.gz
[2025-11-18 10:03:56] -rw-r--r--. 1 boinc boinc      5112 Nov 18 07:39 queuedata.json
[2025-11-18 10:03:56] -rwx------. 1 boinc boinc     36292 Nov 18 07:40 runpilot2-wrapper.sh
[2025-11-18 10:03:56] -rw-r--r--. 1 boinc boinc       100 Nov 18 09:53 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-18 10:03:56] -rwxr-xr-x. 1 boinc boinc      7986 Nov 18 09:53 run_atlas
[2025-11-18 10:03:56] -rw-r--r--. 1 boinc boinc       105 Nov 18 09:53 job.xml
[2025-11-18 10:03:56] -rw-r--r--. 2 boinc boinc 411948677 Nov 18 09:53 EVNT.47493065._000259.pool.root.1
[2025-11-18 10:03:56] -rw-r--r--. 1 boinc boinc      6594 Nov 18 09:53 init_data.xml
[2025-11-18 10:03:56] drwxrwx--x. 2 boinc boinc      4096 Nov 18 09:53 shared
[2025-11-18 10:03:56] -rw-r--r--. 2 boinc boinc    590101 Nov 18 09:53 input.tar.gz
[2025-11-18 10:03:56] -rw-r--r--. 2 boinc boinc     15120 Nov 18 09:53 start_atlas.sh
[2025-11-18 10:03:56] -rw-r--r--. 1 boinc boinc         0 Nov 18 09:53 boinc_lockfile
[2025-11-18 10:03:56] -rw-r--r--. 1 boinc boinc      2773 Nov 18 09:53 pandaJob.out
[2025-11-18 10:03:56] -rw-------. 1 boinc boinc    992798 Nov 18 09:54 agis_schedconf.cvmfs.json
[2025-11-18 10:03:56] -rw-------. 1 boinc boinc   1525063 Nov 18 09:54 agis_ddmendpoints.agis.ALL.json
[2025-11-18 10:03:56] drwx------. 5 boinc boinc      4096 Nov 18 09:54 pilot3
[2025-11-18 10:03:56] -rw-r--r--. 1 boinc boinc       525 Nov 18 10:00 boinc_task_state.xml
[2025-11-18 10:03:56] -rw-------. 1 boinc boinc      1019 Nov 18 10:00 memory_monitor_summary.json
[2025-11-18 10:03:56] -rw-------. 1 boinc boinc     52011 Nov 18 10:01 log.47493068._002590.job.log.tgz.1
[2025-11-18 10:03:56] -rw-------. 1 boinc boinc     10342 Nov 18 10:03 heartbeat.json
[2025-11-18 10:03:56] -rw-r--r--. 1 boinc boinc      8192 Nov 18 10:03 boinc_mmap_file
[2025-11-18 10:03:56] -rw-r--r--. 1 boinc boinc        23 Nov 18 10:03 wrapper_checkpoint.txt
[2025-11-18 10:03:56] -rw-------. 1 boinc boinc       823 Nov 18 10:03 pilotlog.txt
[2025-11-18 10:03:56] -rw-------. 1 boinc boinc        95 Nov 18 10:03 pilot_heartbeat.json
[2025-11-18 10:03:56] -rw-------. 1 boinc boinc    130574 Nov 18 10:03 log.47493068._002590.job.log.1
[2025-11-18 10:03:56] -rw-------. 1 boinc boinc       186 Nov 18 10:03 output.list
[2025-11-18 10:03:56] -rw-r--r--. 1 boinc boinc       620 Nov 18 10:03 runtime_log
[2025-11-18 10:03:56] -rw-------. 1 boinc boinc    204800 Nov 18 10:03 result.tar.gz
[2025-11-18 10:03:56] -rw-------. 1 boinc boinc       645 Nov 18 10:03 x8FLDmRzcf8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmcNFKDmqDFlRo.diag
[2025-11-18 10:03:56] -rw-r--r--. 1 boinc boinc      8528 Nov 18 10:03 runtime_log.err
[2025-11-18 10:03:56] -rw-r--r--. 1 boinc boinc     22692 Nov 18 10:03 stderr.txt
[2025-11-18 10:03:56] No HITS result produced
[2025-11-18 10:03:56]  *** Contents of shared directory: ***
[2025-11-18 10:03:56] total 403096
[2025-11-18 10:03:56] -rw-r--r--. 2 boinc boinc 411948677 Nov 18 09:53 ATLAS.root_0
[2025-11-18 10:03:56] -rw-r--r--. 2 boinc boinc    590101 Nov 18 09:53 input.tar.gz
[2025-11-18 10:03:56] -rw-r--r--. 2 boinc boinc     15120 Nov 18 09:53 start_atlas.sh
[2025-11-18 10:03:56] -rw-------. 1 boinc boinc    204800 Nov 18 10:03 result.tar.gz
10:03:58 (2459226): run_atlas exited; CPU time 93.343131
10:03:58 (2459226): called boinc_finish(0)

</stderr_txt>
]]>

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